Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007181 Rosa chinensis HOM05D001771 ORTHO05D023729 1.1e-156 557.0 364 100.0
Sabra11G0031600 Salix brachista HOM05D001771 ORTHO05D001876 4.1e-47 193.0 429 52.0
RcHm_v2.0_Chr5g0007421 Rosa chinensis HOM05D001771 ORTHO05D001876 1.3e-45 188.0 178 61.2
FAN25G1355 Fragaria x ananassa HOM05D001771 ORTHO05D001876 5.0e-45 186.0 178 59.6
QL05p037029 Quercus lobata HOM05D001771 ORTHO05D001876 6.5e-45 185.7 425 49.6
FvH4_3g04490 Fragaria vesca HOM05D001771 ORTHO05D001876 5.5e-44 182.6 178 59.0
FAN11G1561 Fragaria x ananassa HOM05D001771 ORTHO05D001876 4.7e-43 179.5 178 57.9
FAN21G0649 Fragaria x ananassa HOM05D001771 ORTHO05D001876 5.7e-41 172.6 178 57.9
Prupe.4G039800 Prunus persica HOM05D001771 ORTHO05D001876 4.5e-38 162.9 155 56.8
Haze_06544 Corylus avellana HOM05D001771 ORTHO05D001876 3.6e-35 153.3 448 30.8
MD05G1322800 Malus domestica HOM05D001771 ORTHO05D001876 1.8e-34 151.0 178 49.4
SGA_v2.0_scaffold22G09742 Striga asiatica HOM05D001771 ORTHO05D001876 2.2e-32 144.1 470 44.5
GSVIVG01004511001 Vitis vinifera HOM05D001771 ORTHO05D001876 2.9e-32 143.7 208 44.7
Lj6g0019145 Lotus japonicus HOM05D001771 ORTHO05D001876 2.7e-30 137.1 329 55.3
Actinidia05596 Actinidia chinensis HOM05D001771 ORTHO05D001876 1.0e-29 135.2 210 40.5
CAN.G1705.7 Capsicum annuum HOM05D001771 ORTHO05D001876 2.3e-29 134.0 329 54.4
FAN16G2812 Fragaria x ananassa HOM05D001771 ORTHO05D001876 8.6e-29 132.1 155 52.3
Glyma.07G192100 Glycine max HOM05D001771 ORTHO05D001876 1.8e-26 124.4 326 53.4
Sed0018004 Sechium edule HOM05D001771 ORTHO05D010310 2.3e-26 124.0 252 33.3
Rhsim13G0175400 Rhododendron simsii HOM05D001771 ORTHO05D001876 3.1e-26 123.6 220 39.5
C04p27210 Brassica napus HOM05D001771 ORTHO05D001876 2.0e-25 120.9 368 29.3
BolC4t24253H Brassica oleracea HOM05D001771 ORTHO05D001876 2.0e-25 120.9 368 29.3
Hma1.2p1_3076F.1_g332400 Hydrangea macrophylla HOM05D001771 ORTHO05D001876 7.5e-25 119.0 353 47.0
Nitab4.5_0007390g0010 Nicotiana tabacum HOM05D001771 ORTHO05D001876 2.9e-24 117.1 136 50.0
Thhalv10023227m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 3.7e-24 116.7 386 26.4
CiPaw.10G121000 Carya illinoinensis HOM05D001771 ORTHO05D001876 2.7e-22 110.5 183 39.9
Cfa000382 Carpinus fangiana HOM05D001771 ORTHO05D001876 3.5e-22 110.2 186 39.8
Potri.011G045500 Populus trichocarpa HOM05D001771 ORTHO05D001876 2.3e-21 107.5 185 41.1
Duzib160G0178 Durio zibethinus HOM05D001771 ORTHO05D001876 1.9e-20 104.4 179 39.1
Thecc.06G195200 Theobroma cacao HOM05D001771 ORTHO05D001876 1.9e-20 104.4 180 41.1
Ciclev10014112m.g Citrus clementina HOM05D001771 ORTHO05D001876 2.5e-20 104.0 186 38.7
CiPaw.09G160700 Carya illinoinensis HOM05D001771 ORTHO05D001876 3.3e-20 103.6 185 37.8
Atru.chr10.1973 Acer truncatum HOM05D001771 ORTHO05D001876 4.3e-20 103.2 185 38.9
VMungo0251G2688 Vigna mungo HOM05D009237 ORTHO05D010310 4.3e-20 103.2 139 42.4
CANSAT35G0034 Cannabis sativa HOM05D001771 ORTHO05D001876 5.6e-20 102.8 178 38.8
Nn1g03954 Nelumbo nucifera HOM05D001771 ORTHO05D001876 9.5e-20 102.1 206 36.4
Nitab4.5_0003114g0020 Nicotiana tabacum HOM05D001771 ORTHO05D001876 1.2e-19 101.7 192 37.0
Duzib235G0874 Durio zibethinus HOM05D001771 ORTHO05D001876 1.6e-19 101.3 178 38.8
DCAR_028121 Daucus carota HOM05D001771 ORTHO05D001876 4.7e-19 99.8 211 33.2
Dinv39788 Davidia involucrata HOM05D001771 ORTHO05D001876 8.1e-19 99.0 184 37.5
Lj2C283T9 Lonicera japonica HOM05D001771 ORTHO05D001876 1.8e-18 97.8 182 39.0
Lj1A1210T52 Lonicera japonica HOM05D001771 ORTHO05D001876 8.9e-18 95.5 193 36.3
COL.COLO4_31545 Corchorus olitorius HOM05D001771 ORTHO05D001876 1.2e-17 95.1 136 43.4
Gohir.D09G071100 Gossypium hirsutum HOM05D001771 ORTHO05D001876 1.5e-17 94.7 165 39.4
Gorai.006G086000 Gossypium raimondii HOM05D001771 ORTHO05D001876 1.5e-17 94.7 165 39.4
Dinv40517 Davidia involucrata HOM05D001771 ORTHO05D001876 2.0e-17 94.4 150 38.7
MELO3C002566.2 Cucumis melo HOM05D001771 ORTHO05D001876 2.6e-17 94.0 186 36.6
Aqoxy4G01317 Aquilegia oxysepala HOM05D001771 ORTHO05D001876 4.4e-17 93.2 204 32.8
Gohir.A09G071300 Gossypium hirsutum HOM05D001771 ORTHO05D001876 5.8e-17 92.8 165 38.8
GSVIVG01002544001 Vitis vinifera HOM05D001771 ORTHO05D001876 7.5e-17 92.4 178 36.0
ClCG03G005630 Citrullus lanatus HOM05D001771 ORTHO05D001876 9.8e-17 92.0 184 35.9
PGR042G3830 Punica granatum HOM05D001771 ORTHO05D001876 1.7e-16 91.3 185 35.7
Zm00001eb356040 Zea mays HOM05D001771 ORTHO05D001876 2.9e-16 90.5 137 39.4
BcaC02g10583 Brassica carinata HOM05D001771 ORTHO05D001876 4.9e-16 89.7 343 30.0
Eucgr.E03367 Eucalyptus grandis HOM05D001771 ORTHO05D001876 4.9e-16 89.7 151 37.7
Sed0024760 Sechium edule HOM05D001771 ORTHO05D001876 4.9e-16 89.7 182 35.7
Lsat_1_v5_gn_9_88381 Lactuca sativa HOM05D001771 ORTHO05D010310 1.1e-15 88.6 274 44.5
Gohir.D10G023300 Gossypium hirsutum HOM05D001771 ORTHO05D001876 1.4e-15 88.2 176 36.4
Gohir.A10G022500 Gossypium hirsutum HOM05D001771 ORTHO05D001876 1.9e-15 87.8 176 36.4
Gorai.011G024400 Gossypium raimondii HOM05D001771 ORTHO05D001876 1.9e-15 87.8 176 36.4
Manes.17G042225 Manihot esculenta HOM05D001771 ORTHO05D001876 1.9e-15 87.8 185 34.1
Phvul.006G189900 Phaseolus vulgaris HOM05D001771 ORTHO05D001876 4.1e-15 86.7 141 41.8
VMungo0540G0058 Vigna mungo HOM05D001771 ORTHO05D001876 4.1e-15 86.7 142 40.8
arahy.Tifrunner.gnm1.ann1.M6YII1 Arachis hypogaea HOM05D001771 ORTHO05D001876 7.1e-15 85.9 180 33.9
CsaV3_1G011890 Cucumis sativus L. HOM05D001771 ORTHO05D001876 9.2e-15 85.5 186 33.9
Manes.16G023100 Manihot esculenta HOM05D001771 ORTHO05D001876 9.2e-15 85.5 184 32.1
Nitab4.5_0001820g0030 Nicotiana tabacum HOM05D001771 ORTHO05D001876 9.2e-15 85.5 183 35.0
Medtr2g012630 Medicago truncatula HOM05D001771 ORTHO05D001876 1.2e-14 85.1 184 35.9
CARHR011370 Cardamine hirsuta HOM05D001771 ORTHO05D001876 2.1e-14 84.3 118 39.8
TPR.G36796 Trifolium pratense HOM05D001771 ORTHO05D001876 2.1e-14 84.3 181 37.0
unitig_46.g18631 Utricularia gibba HOM05D001771 ORTHO05D001876 2.7e-14 84.0 40 87.5
arahy.Tifrunner.gnm1.ann1.KMJM1R Arachis hypogaea HOM05D001771 ORTHO05D001876 1.3e-13 81.6 180 32.2
CARHR011360 Cardamine hirsuta HOM05D001771 ORTHO05D010310 1.3e-13 81.6 46 73.9
BcaNung03851 Brassica carinata HOM05D001771 ORTHO05D001876 2.3e-13 80.9 297 33.7
Lalb_Chr18g0059851 Lupinus albus HOM05D001771 ORTHO05D001876 2.3e-13 80.9 143 38.5
Sopen02g023620 Solanum pennellii HOM05D001771 ORTHO05D001876 2.3e-13 80.9 183 34.4
Actinidia01921 Actinidia chinensis HOM05D001771 ORTHO05D001876 3.0e-13 80.5 160 36.9
TAR627G0702 Trochodendron aralioides HOM05D001771 ORTHO05D001876 3.9e-13 80.1 185 33.0
Gorai.010G254700 Gossypium raimondii HOM05D001771 ORTHO05D001876 5.1e-13 79.7 173 35.3
Ca_10478_v3 Cicer arietinum L. HOM05D001771 ORTHO05D001876 6.6e-13 79.3 185 35.7
Glyma.13G184300 Glycine max HOM05D001771 ORTHO05D001876 6.6e-13 79.3 181 31.5
Solyc02g078800.4 Solanum lycopersicum HOM05D001771 ORTHO05D001876 8.6e-13 79.0 183 33.9
THA.LOC104819093 Tarenaya hassleriana HOM05D001771 ORTHO05D001876 1.5e-12 78.2 179 31.8
AL2G15150 Arabidopsis lyrata HOM05D001771 ORTHO05D001876 1.9e-12 77.8 173 34.7
Psat1g207280 Pisum sativum HOM05D001771 ORTHO05D001876 1.9e-12 77.8 188 35.6
PGSC0003DMG400022423 Solanum tuberosum HOM05D001771 ORTHO05D001876 3.3e-12 77.0 141 38.3
vmacro22269 Vaccinium macrocarpon HOM05D001771 ORTHO05D001876 4.3e-12 76.6 227 30.0
Glyma.15G069400 Glycine max HOM05D001771 ORTHO05D001876 5.6e-12 76.3 92 51.1
THA.LOC104809555 Tarenaya hassleriana HOM05D001771 ORTHO05D001876 5.6e-12 76.3 177 30.5
Glyma.13G244300 Glycine max HOM05D001771 ORTHO05D001876 9.5e-12 75.5 92 51.1
AUR62014751 Chenopodium quinoa HOM05D001771 ORTHO05D001876 1.2e-11 75.1 186 34.4
AUR62016929 Chenopodium quinoa HOM05D001771 ORTHO05D001876 3.6e-11 73.6 186 34.4
Thhalv10023689m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 3.6e-11 73.6 139 40.3
Cpa.g.sc27.95 Carica papaya HOM05D001771 ORTHO05D001876 4.7e-11 73.2 171 32.2
Cc02_g12720 Coffea canephora HOM05D001771 ORTHO05D001876 6.2e-11 72.8 183 31.1
Gohir.A06G209500 Gossypium hirsutum HOM05D001771 ORTHO05D001876 6.2e-11 72.8 173 34.1
Ah.14g089100 Amaranthus hybridus HOM05D001771 ORTHO05D001876 1.4e-10 71.6 149 36.9
VMungo0251G0523 Vigna mungo HOM05D001771 ORTHO05D001876 1.4e-10 71.6 168 33.3
arahy.Tifrunner.gnm1.ann1.4PB3U0 Arachis hypogaea HOM05D036968 ORTHO05D023729 1.8e-10 71.2 107 43.0
Thhalv10006699m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 1.8e-10 71.2 150 32.7
MSTRG.15897 Avicennia marina HOM05D001771 ORTHO05D001876 2.3e-10 70.9 185 33.0
Carub.0001s1074 Capsella rubella HOM05D001771 ORTHO05D001876 2.3e-10 70.9 150 34.7
arahy.Tifrunner.gnm1.ann1.187ZZG Arachis hypogaea HOM05D001771 ORTHO05D001876 3.1e-10 70.5 129 37.2
Sc24g0000920 Simmondsia chinensis HOM05D001771 ORTHO05D001876 3.1e-10 70.5 186 32.3
MSTRG.7323 Avicennia marina HOM05D001771 ORTHO05D001876 5.2e-10 69.7 187 33.2
ATR0124G021 Amborella trichopoda HOM05D001771 ORTHO05D001876 6.8e-10 69.3 207 30.9
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 6.8e-10 69.3 90 42.2
AL1G22180 Arabidopsis lyrata HOM05D001771 ORTHO05D001876 8.9e-10 68.9 138 33.3
BraA01t03139Z Brassica rapa HOM05D001771 ORTHO05D001876 8.9e-10 68.9 130 31.5
Hma1.2p1_0835F.1_g225830 Hydrangea macrophylla HOM05D001771 ORTHO05D001876 8.9e-10 68.9 169 34.3
Lsat_1_v5_gn_4_55580 Lactuca sativa HOM05D001771 ORTHO05D001876 8.9e-10 68.9 131 35.1
MBI06_g17212_MAGBIO Magnolia biondii HOM05D001771 ORTHO05D001876 1.2e-09 68.6 212 30.2
BolC1t03776H Brassica oleracea HOM05D001771 ORTHO05D001876 1.5e-09 68.2 140 33.6
EL10Ac8g20639 Beta vulgaris HOM05D001771 ORTHO05D001876 2.0e-09 67.8 166 33.7
Lsat_1_v5_gn_7_19941 Lactuca sativa HOM05D001771 ORTHO05D001876 2.6e-09 67.4 175 33.1
Sp2g03270 Schrenkiella parvula HOM05D001771 ORTHO05D001876 2.6e-09 67.4 130 31.5
BraA09t41801Z Brassica rapa HOM05D001771 ORTHO05D002740 5.8e-09 66.2 120 35.8
Hund21263 Selenicereus undatus HOM05D001771 ORTHO05D001876 5.8e-09 66.2 185 31.4
arahy.Tifrunner.gnm1.ann1.H36AZ5 Arachis hypogaea HOM05D001771 ORTHO05D001876 7.6e-09 65.9 129 38.0
C08p48320 Brassica napus HOM05D001771 ORTHO05D002740 7.6e-09 65.9 120 32.5
A09p64520 Brassica napus HOM05D001771 ORTHO05D001876 9.9e-09 65.5 120 36.7
BcaB08g37381 Brassica carinata HOM05D001771 ORTHO05D001876 1.3e-08 65.1 132 31.1
Carub.0002s0395 Capsella rubella HOM05D001771 ORTHO05D001876 1.7e-08 64.7 131 35.9
BolC8t52371H Brassica oleracea HOM05D001771 ORTHO05D001876 2.2e-08 64.3 120 31.7
HanXRQChr04g0125681 Helianthus annuus HOM05D001771 ORTHO05D001876 2.2e-08 64.3 170 32.9
SHI02000 Sapria himalayana HOM05D001771 ORTHO05D001876 2.2e-08 64.3 110 37.3
Glyma.20G062800 Glycine max HOM05D036968 ORTHO05D023729 2.9e-08 63.9 85 43.5
BcaC07g41792 Brassica carinata HOM05D001771 ORTHO05D002740 3.7e-08 63.5 120 32.5
AT1G61210 Arabidopsis thaliana HOM05D001771 ORTHO05D001876 4.9e-08 63.2 173 31.2
CARHR051460 Cardamine hirsuta HOM05D001771 ORTHO05D001876 4.9e-08 63.2 173 31.2
Aa31LG2G9410 Aethionema arabicum HOM05D001771 ORTHO05D001876 8.4e-08 62.4 132 31.1
BcaB04g20327 Brassica carinata HOM05D001771 ORTHO05D001876 1.1e-07 62.0 135 32.6
MD09G1275000 Malus domestica HOM05D003564 ORTHO05D024794 1.1e-07 62.0 30 86.7
Phvul.002G224100 Phaseolus vulgaris HOM05D001771 ORTHO05D001876 1.1e-07 62.0 141 30.5
Sp1g09830 Schrenkiella parvula HOM05D001771 ORTHO05D001876 1.4e-07 61.6 143 30.1
Nn1g09167 Nelumbo nucifera HOM05D063783 ORTHO05D010310 1.9e-07 61.2 110 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1525 Anthoceros agrestis HOM05D001771 ORTHO05D001876 2.4e-07 60.8 101 35.6
Gorai.005G214400 Gossypium raimondii HOM05D001771 ORTHO05D001876 2.4e-07 60.8 82 42.7
A01p30080 Brassica napus HOM05D001771 ORTHO05D001876 3.2e-07 60.5 216 23.6
MBI18_g13203_MAGBIO Magnolia biondii HOM05D001771 ORTHO05D010310 3.2e-07 60.5 40 75.0
Nn4g24997 Nelumbo nucifera HOM05D001771 ORTHO05D001876 3.2e-07 60.5 223 28.7
RcHm_v2.0_Chr4g0393191 Rosa chinensis HOM05D061369 ORTHO05D010829 4.1e-07 60.1 155 76.8
HPP92_014417 Vanilla planifolia HOM05D001771 ORTHO05D001876 4.1e-07 60.1 144 31.2
C01p38140 Brassica napus HOM05D001771 ORTHO05D001876 7.1e-07 59.3 220 25.0
Gohir.D06G211500 Gossypium hirsutum HOM05D001771 ORTHO05D001876 7.1e-07 59.3 42 71.4
Rhsim12G0090400 Rhododendron simsii HOM05D001771 ORTHO05D001876 7.1e-07 59.3 82 41.5
Dinv40518 Davidia involucrata HOM05D001771 ORTHO05D001876 9.2e-07 58.9 42 71.4
HanXRQChr16g0517881 Helianthus annuus HOM05D001771 ORTHO05D001876 1.2e-06 58.5 112 35.7
Nn8g40358 Nelumbo nucifera HOM05D001771 ORTHO05D010310 1.2e-06 58.5 49 65.3
Oeu027910.1 Olea europaea HOM05D001771 ORTHO05D001876 1.2e-06 58.5 82 41.5
Oeu027911.3 Olea europaea HOM05D001771 ORTHO05D001876 1.2e-06 58.5 82 41.5
Prupe.1G352400 Prunus persica HOM05D001771 ORTHO05D001876 1.6e-06 58.2 81 42.0
Sabra10G0198800 Salix brachista HOM05D001771 ORTHO05D001876 1.6e-06 58.2 82 41.5
CARHR011350 Cardamine hirsuta HOM05D001771 ORTHO05D010310 2.1e-06 57.8 51 64.7
AUR62039594 Chenopodium quinoa HOM05D001771 ORTHO05D001876 2.1e-06 57.8 224 28.1
Ca_00295_v3 Cicer arietinum L. HOM05D001771 ORTHO05D010310 2.1e-06 57.8 42 66.7
Hund23645 Selenicereus undatus HOM05D001771 ORTHO05D001876 2.7e-06 57.4 123 32.5
Zm00001eb044790 Zea mays HOM05D001771 ORTHO05D001876 2.7e-06 57.4 108 36.1
AT1G11160 Arabidopsis thaliana HOM05D001771 ORTHO05D001876 3.5e-06 57.0 138 31.2
Ca_04129_v3 Cicer arietinum L. HOM05D001771 ORTHO05D001876 3.5e-06 57.0 80 41.2
FvH4_4g37370 Fragaria vesca HOM05D001771 ORTHO05D001876 3.5e-06 57.0 81 40.7
FAN07G0208 Fragaria x ananassa HOM05D001771 ORTHO05D001876 3.5e-06 57.0 81 40.7
Hma1.2p1_0191F.1_g083430 Hydrangea macrophylla HOM05D001771 ORTHO05D001876 3.5e-06 57.0 164 32.3
MD13G1000300 Malus domestica HOM05D001771 ORTHO05D001876 3.5e-06 57.0 81 40.7
RcHm_v2.0_Chr4g0447261 Rosa chinensis HOM05D001771 ORTHO05D001876 3.5e-06 57.0 81 40.7
Nn5g28733 Nelumbo nucifera HOM05D001771 ORTHO05D010310 4.6e-06 56.6 39 71.8
Zm00001eb433770 Zea mays HOM05D001771 ORTHO05D001876 4.6e-06 56.6 83 39.8
TWI38G0991 Tripterygium wilfordii HOM05D001771 ORTHO05D001876 6.0e-06 56.2 167 27.5
Zm00001eb432610 Zea mays HOM05D001771 ORTHO05D010310 6.0e-06 56.2 109 33.0
Lalb_Chr20g0122131 Lupinus albus HOM05D001771 ORTHO05D001876 7.8e-06 55.8 129 31.8
Zm00001eb054750 Zea mays HOM05D001248 ORTHO05D001876 7.8e-06 55.8 111 33.3


User provided reference genes

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