Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-36 156.0 73 100.0
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-32 142.5 70 94.3
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 2.9e-13 78.2 47 80.9
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-13 78.2 47 80.9
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-13 78.2 47 80.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-13 78.2 47 80.9
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.9e-13 78.2 47 80.9
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 2.9e-13 78.2 47 80.9
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 6.1e-11 70.5 47 74.5
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 2.3e-10 68.6 43 72.1
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 4.0e-10 67.8 47 72.3
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 4.0e-10 67.8 42 73.8
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 6.8e-10 67.0 40 82.5
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 1.2e-09 66.2 40 75.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 1.5e-09 65.9 40 77.5
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 1.5e-09 65.9 40 77.5
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 2.0e-09 65.5 47 70.2
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.0e-09 65.5 40 75.0
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 2.0e-09 65.5 40 77.5
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 3.4e-09 64.7 40 75.0
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 5.8e-09 63.9 44 70.5
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 5.8e-09 63.9 44 70.5
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 5.8e-09 63.9 44 70.5
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 5.8e-09 63.9 40 75.0
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 5.8e-09 63.9 44 70.5
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 5.8e-09 63.9 51 64.7
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 5.8e-09 63.9 44 72.7
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 5.8e-09 63.9 40 75.0
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 7.5e-09 63.5 47 68.1
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 7.5e-09 63.5 40 75.0
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 9.8e-09 63.2 40 72.5
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 1.7e-08 62.4 40 75.0
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 2.2e-08 62.0 47 63.8
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 2.2e-08 62.0 47 63.8
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 2.2e-08 62.0 47 61.7
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 3.7e-08 61.2 47 59.6
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 3.7e-08 61.2 44 65.9
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 4.9e-08 60.8 39 71.8
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 4.9e-08 60.8 39 71.8
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 4.9e-08 60.8 47 61.7
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 4.9e-08 60.8 44 63.6
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 6.4e-08 60.5 42 69.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 6.4e-08 60.5 42 69.0
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 6.4e-08 60.5 47 63.8
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 8.3e-08 60.1 40 70.0
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 8.3e-08 60.1 40 70.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 8.3e-08 60.1 42 69.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 8.3e-08 60.1 42 69.0
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 8.3e-08 60.1 40 70.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.1e-07 59.7 44 63.6
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 1.1e-07 59.7 44 68.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 1.1e-07 59.7 40 72.5
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 1.1e-07 59.7 39 69.2
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 1.4e-07 59.3 40 62.5
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 1.4e-07 59.3 40 62.5
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 1.4e-07 59.3 47 59.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.2e-07 58.2 40 70.0
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 3.2e-07 58.2 39 69.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 3.2e-07 58.2 40 65.0
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 4.1e-07 57.8 40 67.5
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 5.4e-07 57.4 39 69.2
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 7.0e-07 57.0 39 66.7
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 7.0e-07 57.0 40 70.0
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 9.2e-07 56.6 40 67.5
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 9.2e-07 56.6 47 57.4
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 1.2e-06 56.2 40 62.5
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.6e-06 55.8 40 65.0
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 2.7e-06 55.1 40 62.5
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 3.5e-06 54.7 45 60.0
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 3.5e-06 54.7 40 62.5
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.6e-06 54.3 40 65.0
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.6e-06 54.3 40 65.0
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 4.6e-06 54.3 40 62.5
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 4.6e-06 54.3 46 56.5
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 6.0e-06 53.9 40 57.5
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 7.8e-06 53.5 40 57.5
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 7.8e-06 53.5 40 65.0
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 7.8e-06 53.5 40 65.0
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 7.8e-06 53.5 40 57.5


User provided reference genes

Program Settings