Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 3.9e-284 980.7 473 100.0
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.8e-260 900.2 475 91.4
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.2e-258 895.2 475 90.9
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.4e-241 839.3 475 84.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 5.1e-215 751.1 473 77.0
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 6.9e-212 740.7 475 75.4
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 3.5e-208 728.4 399 85.0
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 2.3e-207 725.7 473 73.8
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.1e-206 723.4 472 73.9
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 1.5e-206 723.0 485 72.0
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 9.6e-206 720.3 469 75.1
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 2.1e-205 719.2 469 74.8
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 6.2e-205 717.6 463 75.4
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 1.4e-204 716.5 482 72.8
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 4.0e-204 714.9 471 72.8
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 9.0e-204 713.8 476 71.8
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.2e-203 713.4 462 74.2
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 3.4e-203 711.8 470 73.4
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.7e-202 709.5 480 73.8
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 6.0e-200 701.0 468 72.6
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.3e-199 699.9 421 81.0
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 4.3e-198 694.9 398 81.9
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 1.1e-196 690.3 459 71.9
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.4e-196 689.9 462 70.6
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 4.0e-196 688.3 474 69.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 5.3e-196 688.0 477 69.2
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.2e-195 686.8 472 69.5
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.5e-195 686.4 480 69.8
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.5e-195 686.4 399 79.2
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 3.4e-195 685.3 457 73.3
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 5.8e-195 684.5 473 70.8
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.3e-194 683.3 457 72.6
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 6.4e-194 681.0 474 69.6
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 4.2e-193 678.3 469 69.3
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 2.1e-192 676.0 472 68.9
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 4.6e-192 674.9 464 69.6
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.0e-191 673.7 471 69.0
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.5e-190 669.8 495 67.5
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 5.6e-190 667.9 450 70.2
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.3e-189 666.8 474 68.1
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.6e-189 666.4 471 69.2
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 2.1e-189 666.0 469 69.3
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 4.8e-189 664.8 471 69.4
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.4e-188 663.3 472 68.0
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.4e-188 662.5 479 68.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 6.9e-188 661.0 471 69.4
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 9.0e-188 660.6 455 68.8
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.2e-187 660.2 403 76.4
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.2e-187 660.2 459 68.8
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.0e-186 657.1 479 66.8
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.7e-186 656.4 458 67.9
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 1.7e-186 656.4 458 67.9
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 4.9e-186 654.8 493 66.7
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 8.4e-186 654.1 467 68.1
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 1.1e-185 653.7 393 75.6
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 3.2e-185 652.1 466 68.2
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 1.6e-184 649.8 469 67.2
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.1e-184 649.4 478 65.9
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 2.1e-184 649.4 466 68.7
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 6.0e-184 647.9 469 68.0
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 7.9e-184 647.5 480 65.6
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 8.7e-183 644.0 468 67.7
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.1e-182 643.7 476 65.8
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.5e-182 642.5 468 67.5
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 3.3e-182 642.1 479 65.8
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 5.7e-182 641.3 484 66.3
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 9.7e-182 640.6 468 67.7
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 2.2e-181 639.4 479 66.2
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 2.2e-181 639.4 466 67.2
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 2.2e-181 639.4 477 66.5
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 6.3e-181 637.9 468 67.1
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 6.3e-181 637.9 468 67.1
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.1e-180 637.1 465 65.2
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.8e-180 636.3 457 66.1
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 2.0e-179 632.9 393 75.1
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.6e-179 632.5 458 67.5
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 8.5e-178 627.5 404 73.0
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.1e-177 627.1 397 75.1
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.9e-177 626.3 468 64.7
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.5e-177 625.9 457 65.0
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 5.5e-177 624.8 468 65.0
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 9.3e-177 624.0 406 71.7
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.1e-176 622.9 470 64.7
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 4.6e-176 621.7 465 64.1
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.9e-175 618.6 410 69.8
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 7.4e-174 614.4 414 69.8
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.8e-173 612.5 470 64.7
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 3.8e-170 602.1 388 71.9
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.5e-170 601.3 402 68.2
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.9e-169 599.7 349 77.9
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.4e-167 593.6 413 69.5
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.4e-166 588.6 383 68.9
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 6.3e-165 584.7 403 68.2
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 2.6e-163 579.3 415 68.0
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.8e-162 575.5 356 75.8
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 8.5e-162 574.3 413 63.7
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.4e-161 573.5 413 64.9
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 1.4e-161 573.5 464 64.2
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.4e-159 567.0 356 73.3
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.8e-159 566.6 368 76.4
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 1.1e-156 557.4 403 64.3
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.4e-156 557.0 384 70.3
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 4.2e-153 545.4 354 68.1
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 9.7e-150 534.3 393 64.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 3.6e-144 515.8 368 68.8
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.0e-126 456.8 410 52.4
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.4e-124 449.9 429 55.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 9.2e-124 448.0 335 68.1
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.3e-122 444.1 402 53.2
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 1.7e-122 443.7 429 50.3
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 4.3e-121 439.1 406 50.7
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 9.8e-118 427.9 231 92.6
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.6e-115 420.6 251 80.1
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.1e-111 406.4 435 46.9
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 9.2e-100 368.2 271 67.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 6.0e-91 339.0 243 61.7
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.3e-74 284.6 185 64.3
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.5e-73 280.4 164 79.3
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 5.3e-71 272.7 160 75.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.1e-63 246.9 205 55.6
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 6.7e-58 229.2 157 67.5
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.4e-55 221.5 129 72.1
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 3.1e-47 193.7 129 68.2
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 1.4e-31 141.7 384 28.6
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.2e-30 138.7 371 28.8
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 3.0e-26 124.0 86 68.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.0e-21 109.0 347 27.4
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.7e-21 108.2 498 27.1
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.6e-12 76.6 54 70.4
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 9.5e-12 75.9 80 56.2
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 8.0e-11 72.8 166 32.5
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.4e-10 72.0 91 42.9
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 9.8e-09 65.9 58 48.3
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 2.4e-07 61.2 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 2.4e-07 61.2 61 52.5


User provided reference genes

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