Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0003011 Rosa chinensis HOM05D005257 ORTHO05D006425 6.8e-30 133.3 64 100.0
RcHm_v2.0_Chr5g0003131 Rosa chinensis HOM05D005257 ORTHO05D006425 6.8e-30 133.3 64 100.0
FvH4_2g11600 Fragaria vesca HOM05D005257 ORTHO05D006425 1.6e-26 122.1 63 90.5
FAN15G1561 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.6e-26 122.1 63 90.5
FAN24G1403 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.6e-26 122.1 63 90.5
FAN27G2011 Fragaria x ananassa HOM05D005257 ORTHO05D006425 1.6e-26 122.1 63 90.5
RcHm_v2.0_Chr6g0270841 Rosa chinensis HOM05D005257 ORTHO05D006425 2.0e-26 121.7 63 88.9
Cfa017688 Carpinus fangiana HOM05D005257 ORTHO05D006425 5.9e-26 120.2 63 87.3
CiPaw.09G164800 Carya illinoinensis HOM05D005257 ORTHO05D006425 1.7e-25 118.6 63 84.1
Haze_20460 Corylus avellana HOM05D005257 ORTHO05D006425 1.7e-25 118.6 63 84.1
Cfa005496 Carpinus fangiana HOM05D005257 ORTHO05D006425 3.8e-25 117.5 63 85.7
MBI05_g13905_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 5.0e-25 117.1 63 85.7
MBI05_g42570_MAGBIO Magnolia biondii HOM05D005257 ORTHO05D006425 5.0e-25 117.1 63 85.7
THA.LOC104802876 Tarenaya hassleriana HOM05D005257 ORTHO05D006425 6.6e-25 116.7 63 85.7
Prupe.1G541500 Prunus persica HOM05D005257 ORTHO05D006425 8.6e-25 116.3 63 85.7
Hund15057 Selenicereus undatus HOM05D005257 ORTHO05D006425 8.6e-25 116.3 63 82.5
Aa31LG11G11610 Aethionema arabicum HOM05D005257 ORTHO05D006425 1.1e-24 115.9 63 82.5
CsaV3_4G012150 Cucumis sativus L. HOM05D005257 ORTHO05D006425 1.1e-24 115.9 63 82.5
Potri.013G061400 Populus trichocarpa HOM05D005257 ORTHO05D006425 1.5e-24 115.5 63 85.7
Dinv05572 Davidia involucrata HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
Dinv11935 Davidia involucrata HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
ECA232G0672 Erigeron canadensis HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
HanXRQChr02g0058981 Helianthus annuus HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
HanXRQChr12g0354211 Helianthus annuus HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
Manes.08G154800 Manihot esculenta HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
Sabra13G0054300 Salix brachista HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 85.7
TAR362G1082 Trochodendron aralioides HOM05D005257 ORTHO05D006425 1.9e-24 115.2 63 84.1
Atru.chr2.1463 Acer truncatum HOM05D005257 ORTHO05D006425 2.5e-24 114.8 63 85.7
ClCG04G005430 Citrullus lanatus HOM05D005257 ORTHO05D006425 2.5e-24 114.8 63 82.5
MELO3C008815.2 Cucumis melo HOM05D005257 ORTHO05D006425 3.3e-24 114.4 63 81.0
Sed0016053 Sechium edule HOM05D005257 ORTHO05D006425 3.3e-24 114.4 63 82.5
HPP92_025446 Vanilla planifolia HOM05D005257 ORTHO05D006425 3.3e-24 114.4 63 82.5
VMungo1383G2809 Vigna mungo HOM05D005257 ORTHO05D006425 3.3e-24 114.4 63 82.5
Carub.0006s1614 Capsella rubella HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 82.5
Gohir.A11G232100 Gossypium hirsutum HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 81.0
Gohir.D11G243400 Gossypium hirsutum HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 81.0
Gorai.007G258400 Gossypium raimondii HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 81.0
Phvul.001G113700 Phaseolus vulgaris HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 82.5
SGA_v2.0_scaffold31G12800 Striga asiatica HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 82.5
TWI31G1180 Tripterygium wilfordii HOM05D005257 ORTHO05D006425 4.3e-24 114.0 63 84.1
ATR0697G033 Amborella trichopoda HOM05D005257 ORTHO05D006425 5.6e-24 113.6 63 81.0
CAN.G732.36 Capsicum annuum HOM05D005257 ORTHO05D006425 5.6e-24 113.6 63 82.5
Hma1.2p1_0768F.1_g215600 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 5.6e-24 113.6 63 81.0
Hma1.2p1_0768F.1_g215610 Hydrangea macrophylla HOM05D005257 ORTHO05D006425 5.6e-24 113.6 63 81.0
SalBow3G0128 Salvia bowleyana HOM05D005257 ORTHO05D006425 5.6e-24 113.6 63 82.5
AL6G29030 Arabidopsis lyrata HOM05D005257 ORTHO05D006425 7.3e-24 113.2 63 82.5
CANSAT35G0669 Cannabis sativa HOM05D005257 ORTHO05D006425 7.3e-24 113.2 63 82.5
Glyma.16G038400 Glycine max HOM05D005257 ORTHO05D006425 7.3e-24 113.2 63 81.0
Glyma.19G114400 Glycine max HOM05D005257 ORTHO05D006425 7.3e-24 113.2 63 81.0
Hund03701 Selenicereus undatus HOM05D005257 ORTHO05D006425 7.3e-24 113.2 63 81.0
Medtr7g086290 Medicago truncatula HOM05D005257 ORTHO05D006425 9.5e-24 112.8 63 81.0
PGR042G1596 Punica granatum HOM05D005257 ORTHO05D006425 9.5e-24 112.8 63 81.0
Thecc.05G245000 Theobroma cacao HOM05D005257 ORTHO05D006425 9.5e-24 112.8 63 81.0
TPR.G17857 Trifolium pratense HOM05D005257 ORTHO05D006425 9.5e-24 112.8 63 81.0
COL.COLO4_28605 Corchorus olitorius HOM05D005257 ORTHO05D006425 1.2e-23 112.5 63 79.4
Eucgr.A02125 Eucalyptus grandis HOM05D005257 ORTHO05D006425 1.2e-23 112.5 63 81.0
MSTRG.19351 Avicennia marina HOM05D005257 ORTHO05D006425 1.6e-23 112.1 63 81.0
PGR042G3559 Punica granatum HOM05D005257 ORTHO05D006425 1.6e-23 112.1 63 79.4
AT5G17930 Arabidopsis thaliana HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
arahy.Tifrunner.gnm1.ann1.B386PI Arachis hypogaea HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 79.4
arahy.Tifrunner.gnm1.ann1.DQ02GG Arachis hypogaea HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 79.4
arahy.Tifrunner.gnm1.ann1.JQ1SRI Arachis hypogaea HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 79.4
arahy.Tifrunner.gnm1.ann1.YCKM6W Arachis hypogaea HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 79.4
BcaB05g23293 Brassica carinata HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
A02p04570 Brassica napus HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
C02p09500 Brassica napus HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
BolC2t06856H Brassica oleracea HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
BraA02t05418Z Brassica rapa HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
Duzib177G0708 Durio zibethinus HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 79.4
Thhalv10012737m.g Eutrema salsugineum HOM05D005257 ORTHO05D006425 2.1e-23 111.7 63 81.0
Cpa.g.sc56.49 Carica papaya HOM05D005257 ORTHO05D006425 2.8e-23 111.3 63 79.4
CDE10G0660 Ceratophyllum demersum HOM05D005257 ORTHO05D006425 2.8e-23 111.3 63 79.4
DCAR_003248 Daucus carota HOM05D005257 ORTHO05D006425 2.8e-23 111.3 63 77.8
Sc10g0005500 Simmondsia chinensis HOM05D005257 ORTHO05D006425 2.8e-23 111.3 63 79.4
Ciclev10018934m.g Citrus clementina HOM05D005257 ORTHO05D006425 3.6e-23 110.9 63 81.0
Lj1g0012853 Lotus japonicus HOM05D005257 ORTHO05D006425 3.6e-23 110.9 63 79.4
Solyc03g097280.4 Solanum lycopersicum HOM05D005257 ORTHO05D006425 3.6e-23 110.9 63 81.0
Sopen03g028050 Solanum pennellii HOM05D005257 ORTHO05D006425 3.6e-23 110.9 63 81.0
Lj4C106T9 Lonicera japonica HOM05D005257 ORTHO05D006425 4.7e-23 110.5 63 77.8
Lalb_Chr10g0095341 Lupinus albus HOM05D005257 ORTHO05D006425 4.7e-23 110.5 63 77.8
Nn1g06286 Nelumbo nucifera HOM05D005257 ORTHO05D006425 4.7e-23 110.5 63 79.4
Peaxi162Scf00117g00415 Petunia axillaris HOM05D005257 ORTHO05D006425 4.7e-23 110.5 63 81.0
Sp6g26340 Schrenkiella parvula HOM05D005257 ORTHO05D006425 4.7e-23 110.5 63 81.0
CSS0043158 Camellia sinensis var. sinensis HOM05D005257 ORTHO05D006425 6.1e-23 110.2 63 76.2
CARHR195170 Cardamine hirsuta HOM05D005257 ORTHO05D006425 6.1e-23 110.2 63 77.8
PSO384G0627 Papaver somniferum HOM05D005257 ORTHO05D006425 6.1e-23 110.2 63 79.4
Ca_08293_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 8.0e-23 109.8 63 77.8
Ca_29914_v3 Cicer arietinum L. HOM05D005257 ORTHO05D006425 8.0e-23 109.8 63 77.8
Cc06_g07290 Coffea canephora HOM05D005257 ORTHO05D006425 8.0e-23 109.8 63 76.2
Actinidia21524 Actinidia chinensis HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 76.2
Ah.15g100140 Amaranthus hybridus HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 77.8
EL10Ac5g11757 Beta vulgaris HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 76.2
AUR62039715 Chenopodium quinoa HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 79.4
Migut.J00763 Erythranthe guttata HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 77.8
Lsat_1_v5_gn_9_60281 Lactuca sativa HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 77.8
MD12G1008000 Malus domestica HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 79.4
Oeu044649.1 Olea europaea HOM05D005257 ORTHO05D006425 1.0e-22 109.4 63 79.4
Psat3g087120 Pisum sativum HOM05D005257 ORTHO05D006425 1.4e-22 109.0 63 76.2
Os05g0147200 Oryza sativa ssp. japonica HOM05D005257 ORTHO05D006425 4.0e-22 107.5 63 74.6
Rhsim08G0079300 Rhododendron simsii HOM05D005257 ORTHO05D006425 5.2e-22 107.1 63 73.0
AagrBONN_evm.TU.Sc2ySwM_340.475 Anthoceros agrestis HOM05D005257 ORTHO05D006425 6.8e-22 106.7 63 74.6
PSO339G0351 Papaver somniferum HOM05D005257 ORTHO05D006425 6.8e-22 106.7 63 77.8
vmacro18109 Vaccinium macrocarpon HOM05D005257 ORTHO05D006425 6.8e-22 106.7 63 73.0
GSVIVG01029949001 Vitis vinifera HOM05D005257 ORTHO05D006425 6.8e-22 106.7 63 77.8
AUR62036264 Chenopodium quinoa HOM05D005257 ORTHO05D006425 8.9e-22 106.3 63 77.8
Zm00001eb417990 Zea mays HOM05D005257 ORTHO05D006425 1.2e-21 105.9 63 74.6
SEGI_02385 Sequoiadendron giganteum HOM05D005257 ORTHO05D006425 1.5e-21 105.5 63 73.0
Aqoxy1G00543 Aquilegia oxysepala HOM05D005257 ORTHO05D006425 2.0e-21 105.1 63 76.2
Mapoly0135s0015 Marchantia polymorpha HOM05D005257 ORTHO05D006425 5.7e-21 103.6 63 69.8
QL07p027173 Quercus lobata HOM05D005257 ORTHO05D006425 5.7e-21 103.6 64 78.1
SMO172G0149 Selaginella moellendorffii HOM05D005257 ORTHO05D006425 1.7e-20 102.1 63 73.0
CBR_g51831 Chara braunii HOM05D005257 ORTHO05D006425 8.3e-20 99.8 63 66.7
GSVIVG01027853001 Vitis vinifera HOM05D005257 ORTHO05D006425 1.2e-18 95.9 62 69.4
Pp3c3_21680 Physcomitrium patens HOM05D005257 ORTHO05D006425 1.3e-17 92.4 63 60.3
Lj1g0008743 Lotus japonicus HOM05D005257 ORTHO05D006425 1.1e-16 89.4 63 68.3
MCO03G302 Micromonas commoda HOM05D005257 ORTHO05D006425 1.6e-15 85.5 63 57.1
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.5e-13 79.0 63 65.1
Cre09.g415200 Chlamydomonas reinhardtii HOM05D005257 ORTHO05D006425 1.7e-12 75.5 61 60.7
TPR.G36393 Trifolium pratense HOM05D005257 ORTHO05D006425 6.4e-12 73.6 43 79.1
PRCOL_00000790 Prasinoderma coloniale HOM05D005257 ORTHO05D006425 2.7e-10 68.2 62 48.4
Atru.ctg1436.26 Acer truncatum HOM05D005257 ORTHO05D006425 6.2e-07 57.0 63 41.3


User provided reference genes

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