Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 4.7e-241 837.4 409 100.0
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 3.3e-239 831.2 409 99.3
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.7e-239 830.5 409 99.3
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.7e-238 828.9 409 99.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.8e-230 801.6 409 94.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.0e-227 793.1 409 93.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.0e-224 783.1 406 92.4
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 3.0e-224 781.6 406 92.1
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 6.7e-224 780.4 406 92.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.2e-223 779.6 409 92.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.3e-222 776.2 407 91.4
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.8e-222 775.0 405 91.6
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.7e-222 774.6 406 92.1
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 4.8e-222 774.2 406 91.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.1e-221 773.1 425 89.2
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 4.1e-221 771.2 407 91.2
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 5.3e-221 770.8 409 90.5
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.2e-220 769.6 406 91.6
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.2e-220 769.6 406 91.4
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.7e-220 768.5 406 91.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.5e-220 768.1 409 90.2
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 91.4
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.0e-219 766.5 421 89.1
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.7e-219 765.8 408 90.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 91.1
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.8e-219 764.6 404 90.1
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 5.0e-219 764.2 406 90.9
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 90.2
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 89.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 8.5e-219 763.5 406 91.1
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.5e-219 763.5 409 89.2
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 8.5e-219 763.5 404 90.6
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.1e-218 763.1 406 89.9
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 89.5
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 90.0
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 4.2e-218 761.1 409 89.7
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.2e-217 759.6 409 89.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.2e-217 759.6 405 89.1
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 89.9
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 89.9
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.1e-217 758.8 409 89.0
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.1e-217 758.8 406 89.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.1e-217 758.8 452 83.4
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 89.7
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.6e-217 758.1 407 88.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 89.9
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.6e-217 758.1 404 89.1
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-217 757.7 406 90.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.7e-217 757.7 406 89.2
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 4.7e-217 757.7 409 89.0
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 6.1e-217 757.3 404 88.9
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 89.0
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 8.0e-217 756.9 411 89.5
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.0e-216 756.5 409 88.3
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 89.5
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 88.8
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 88.7
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 89.7
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 5.2e-216 754.2 406 89.2
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 88.3
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 6.8e-216 753.8 404 88.6
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.8e-216 753.8 476 79.8
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 8.8e-216 753.4 404 89.4
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.2e-215 753.1 406 88.7
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.0e-215 752.3 409 88.0
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.0e-215 752.3 406 88.4
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.0e-215 752.3 404 88.6
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 3.4e-215 751.5 409 87.8
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 3.4e-215 751.5 406 88.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 4.4e-215 751.1 406 88.4
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 5.7e-215 750.7 409 87.0
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.7e-215 750.7 409 87.8
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 5.7e-215 750.7 404 88.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.2e-214 748.8 409 87.0
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.2e-214 748.8 410 86.8
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 2.8e-214 748.4 410 86.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 6.3e-214 747.3 409 86.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 8.3e-214 746.9 409 87.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 87.0
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 87.5
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 86.6
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.1e-213 745.0 409 86.8
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 3.1e-213 745.0 409 86.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 87.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 87.0
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 5.4e-213 744.2 405 87.7
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.0e-213 743.8 409 86.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 9.1e-213 743.4 407 88.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 86.6
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 86.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 86.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 4.5e-212 741.1 410 86.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 86.6
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 5.9e-212 740.7 406 86.9
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 5.9e-212 740.7 410 86.8
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 7.7e-212 740.3 406 86.5
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 7.7e-212 740.3 406 86.9
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.9e-211 738.4 410 86.8
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.8e-211 738.0 448 81.5
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 6.6e-211 737.3 410 86.3
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 6.6e-211 737.3 410 86.3
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 3.3e-210 734.9 396 88.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 4.7e-209 731.1 406 86.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.4e-208 729.6 452 78.8
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 3.0e-208 728.4 436 81.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 5.2e-208 727.6 409 84.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 6.8e-208 727.2 404 86.1
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.7e-207 724.2 405 84.9
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.2e-206 722.2 406 85.0
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.4e-205 718.8 385 89.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.1e-205 718.0 406 84.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.3e-203 713.0 385 89.6
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 6.6e-203 710.7 383 89.6
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.1e-202 709.9 377 90.7
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 4.0e-200 701.4 520 69.8
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 7.5e-199 697.2 410 83.2
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 4.6e-196 688.0 413 80.6
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 4.3e-194 681.4 356 91.0
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.2e-193 679.9 415 80.5
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.8e-193 678.7 358 90.5
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 4.9e-190 667.9 406 81.8
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.4e-189 666.4 379 83.6
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.4e-189 665.6 409 77.3
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 5.4e-189 664.5 379 83.1
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 2.5e-186 655.6 358 87.2
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.1e-178 630.2 405 73.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.7e-177 624.8 404 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 2.4e-176 622.5 406 74.1
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.4e-173 611.3 380 73.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.8e-169 599.0 320 89.4
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.4e-165 585.9 390 71.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.4e-158 560.8 409 69.9
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.3e-155 553.5 387 72.6
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-149 532.3 318 80.5
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.8e-145 519.2 310 83.5
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.4e-141 506.9 381 64.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.7e-129 465.7 245 91.4
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.5e-127 458.8 258 84.5
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.3e-126 457.2 238 92.0
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 5.0e-126 455.3 368 62.5
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.2e-119 434.1 385 56.1
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.9e-117 426.8 225 89.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.2e-110 403.3 239 81.2
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 9.4e-101 371.3 197 90.4
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.7e-81 307.4 404 44.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 6.4e-73 278.9 390 42.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 5.4e-72 275.8 180 75.6
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.8e-67 260.8 180 69.4
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.1e-63 247.3 141 82.3
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.5e-63 246.5 140 82.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.9e-56 224.2 124 83.9
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 5.4e-48 196.1 130 75.4
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.0e-22 112.1 128 50.8
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.6e-20 104.8 58 77.6
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 8.2e-12 75.9 332 23.8
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 4.5e-10 70.1 337 23.7


User provided reference genes

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