Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 5.9e-162 574.3 328 100.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 7.7e-138 494.2 327 86.5
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.6e-137 491.1 326 85.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.8e-134 483.0 327 86.2
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.6e-127 458.8 340 73.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 6.2e-127 458.0 338 74.6
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 3.7e-124 448.7 346 74.6
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.9e-115 419.9 334 68.9
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 3.2e-115 419.1 331 67.7
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 4.1e-115 418.7 252 83.7
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.0e-113 414.1 252 82.9
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 3.0e-113 412.5 251 82.1
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 6.6e-113 411.4 252 81.3
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 6.6e-113 411.4 251 82.1
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 8.6e-113 411.0 254 82.7
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 7.3e-112 407.9 251 81.3
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.2e-111 407.1 252 81.7
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.8e-111 406.0 250 81.6
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 6.2e-111 404.8 252 78.6
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.4e-110 403.7 249 79.1
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 6.8e-110 401.4 251 78.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 8.9e-110 401.0 326 64.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 8.9e-110 401.0 249 79.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 8.9e-110 401.0 249 78.7
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 8.9e-110 401.0 251 78.9
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.2e-109 400.6 244 83.2
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.5e-109 400.2 251 78.5
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.5e-109 400.2 252 77.4
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.6e-109 399.4 249 79.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.4e-109 399.1 254 79.1
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.3e-108 397.1 251 77.7
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.7e-108 396.7 253 79.1
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.7e-108 396.7 259 78.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.2e-108 396.4 249 79.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.2e-108 396.4 251 78.5
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.7e-108 395.6 315 67.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.7e-108 395.6 248 79.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.9e-108 395.2 250 77.6
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 4.9e-108 395.2 250 78.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 6.4e-108 394.8 364 63.5
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 8.4e-108 394.4 321 64.8
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.9e-107 393.3 251 77.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.9e-107 393.3 323 66.9
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.4e-107 392.9 252 78.2
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.4e-107 392.9 252 78.2
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.2e-107 392.5 248 77.8
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.4e-107 391.7 250 75.2
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 7.1e-107 391.3 251 76.9
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.2e-106 390.6 259 76.8
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.2e-106 390.6 328 65.5
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.6e-106 390.2 250 74.8
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.6e-106 390.2 251 76.9
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.6e-106 390.2 249 77.9
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.7e-106 389.4 256 77.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.5e-106 389.0 249 77.1
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.8e-106 387.9 249 75.9
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.7e-105 386.7 249 75.5
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.3e-105 386.3 249 74.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 5.6e-104 381.7 254 75.6
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.8e-103 379.4 253 73.9
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.6e-103 379.0 251 72.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 3.1e-102 375.9 250 73.6
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 2.6e-101 372.9 245 74.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.4e-101 372.5 252 73.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-100 370.5 322 61.8
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.7e-100 370.2 245 73.1
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 2.2e-100 369.8 251 74.1
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 2.2e-100 369.8 331 61.6
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.8e-100 369.0 243 73.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 6.4e-100 368.2 250 74.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.4e-99 367.1 245 73.1
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 2.4e-99 366.3 251 73.7
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.2e-99 365.9 262 69.8
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.6e-98 363.6 320 68.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.6e-98 363.6 253 73.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.1e-98 363.2 305 62.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.7e-98 362.8 252 72.2
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 3.5e-98 362.5 320 65.3
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 3.5e-98 362.5 320 65.3
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.6e-98 362.1 251 69.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 6.0e-98 361.7 341 61.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.8e-98 361.3 320 64.4
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.3e-97 360.5 251 72.9
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 3.0e-97 359.4 250 71.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.9e-97 359.0 252 71.0
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 3.9e-97 359.0 253 69.6
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 6.6e-97 358.2 240 74.6
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 8.7e-97 357.8 301 63.8
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 8.7e-97 357.8 325 60.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.5e-96 357.1 308 63.0
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.5e-96 356.3 241 73.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.3e-96 355.9 329 61.1
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 5.3e-94 348.6 256 74.2
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 8.7e-89 331.3 251 65.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 4.3e-88 328.9 251 64.5
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 5.6e-88 328.6 245 66.5
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 4.8e-87 325.5 250 64.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 8.1e-87 324.7 250 64.0
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.0e-85 320.1 211 75.8
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-80 304.3 168 92.9
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 2.4e-78 296.6 200 71.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.3e-76 290.8 248 60.5
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 8.4e-76 288.1 248 61.7
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.4e-72 275.0 193 77.2
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.3e-70 268.9 253 49.8
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 8.5e-68 261.5 251 51.0
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-66 257.7 190 74.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.6e-66 257.3 247 51.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.0e-56 223.8 228 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.1e-54 218.0 204 52.9
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.4e-54 217.6 143 74.1
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.9e-49 199.5 159 86.8
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.1e-48 198.0 167 61.1
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-47 194.1 170 67.6
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.4e-46 191.0 141 66.7
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.9e-43 180.6 122 73.0
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-43 180.3 107 85.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 7.2e-43 178.7 163 60.1
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.7e-40 169.1 184 53.8
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-38 164.9 109 73.4
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 4.1e-38 162.9 109 71.6
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 9.4e-35 151.8 80 95.0
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.0e-33 148.3 104 67.3
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 4.1e-30 136.3 109 60.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.1e-30 136.3 106 60.4
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.9e-29 132.5 75 85.3
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.7e-29 132.1 96 68.8
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.8e-28 129.8 75 80.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-25 121.3 116 60.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 5.2e-25 119.4 242 30.6
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 2.3e-20 104.0 82 62.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.9e-19 100.9 80 57.5
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 5.6e-19 99.4 229 31.9
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.7e-18 96.3 83 59.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.7e-18 96.3 56 82.1
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 5.2e-17 92.8 50 86.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.0e-16 90.9 56 78.6
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.2e-15 87.4 180 31.1
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.9e-15 87.0 147 35.4
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.8e-14 84.3 99 53.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.2e-13 81.6 144 36.1
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 8.0e-10 68.9 68 45.6
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.3e-09 67.4 48 58.3
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.1e-09 67.0 47 72.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.2e-08 65.1 62 51.6


User provided reference genes

Program Settings