Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0440521 Rosa chinensis HOM05D007647 ORTHO05D009644 2.8e-190 668.7 404 100.0
FAN07G2131 Fragaria x ananassa HOM05D007647 ORTHO05D009644 2.8e-169 599.0 406 89.9
FAN12G1599 Fragaria x ananassa HOM05D007647 ORTHO05D009644 2.3e-168 595.9 405 89.4
FvH4_4g31851 Fragaria vesca HOM05D007647 ORTHO05D009644 1.1e-162 577.0 401 88.3
MD13G1078100 Malus domestica HOM05D007647 ORTHO05D009644 9.2e-133 477.6 338 79.3
Prupe.1G269000 Prunus persica HOM05D007647 ORTHO05D009644 2.1e-129 466.5 301 79.1
COL.COLO4_23043 Corchorus olitorius HOM05D007647 ORTHO05D009644 6.4e-118 428.3 296 75.3
CANSAT56G1214 Cannabis sativa HOM05D007647 ORTHO05D009644 1.0e-115 421.0 259 80.3
GSVIVG01020063001 Vitis vinifera HOM05D007647 ORTHO05D009644 3.9e-115 419.1 290 74.8
Ciclev10031710m.g Citrus clementina HOM05D007647 ORTHO05D009644 6.7e-115 418.3 299 71.9
TAR629G2072 Trochodendron aralioides HOM05D007647 ORTHO05D009644 4.3e-114 415.6 300 72.0
Duzib268G0594 Durio zibethinus HOM05D007647 ORTHO05D009644 3.7e-113 412.5 300 73.3
Glyma.08G297100 Glycine max HOM05D007647 ORTHO05D009644 4.8e-113 412.1 259 77.6
Haze_12054 Corylus avellana HOM05D007647 ORTHO05D009644 9.0e-112 407.9 306 71.2
Manes.01G189400 Manihot esculenta HOM05D007647 ORTHO05D009644 9.0e-112 407.9 300 72.0
Thecc.02G354300 Theobroma cacao HOM05D007647 ORTHO05D009644 9.0e-112 407.9 300 72.3
TWI36G1390 Tripterygium wilfordii HOM05D007647 ORTHO05D009644 1.7e-110 403.7 296 69.3
CsaV3_5G025730 Cucumis sativus L. HOM05D007647 ORTHO05D009644 3.8e-110 402.5 299 68.6
CSS0041565 Camellia sinensis var. sinensis HOM05D007647 ORTHO05D009644 1.1e-109 401.0 260 78.1
Actinidia08217 Actinidia chinensis HOM05D007647 ORTHO05D009644 1.9e-109 400.2 306 68.6
MELO3C002903.2 Cucumis melo HOM05D007647 ORTHO05D009644 1.9e-109 400.2 299 67.9
Sc04g0008410 Simmondsia chinensis HOM05D007647 ORTHO05D009644 2.4e-109 399.8 293 68.6
Lj3g0001156 Lotus japonicus HOM05D007647 ORTHO05D009644 1.3e-107 394.0 303 67.0
Atru.chr11.1897 Acer truncatum HOM05D007647 ORTHO05D009644 3.9e-107 392.5 296 70.6
Medtr8g468600 Medicago truncatula HOM05D007647 ORTHO05D009644 1.1e-106 391.0 268 73.1
Nn4g23062 Nelumbo nucifera HOM05D007647 ORTHO05D009644 2.5e-106 389.8 242 78.5
Aqoxy3G03286 Aquilegia oxysepala HOM05D007647 ORTHO05D009644 7.4e-106 388.3 301 66.8
ClCG09G020660 Citrullus lanatus HOM05D007647 ORTHO05D009644 7.4e-106 388.3 337 61.7
Gohir.A13G071900 Gossypium hirsutum HOM05D007647 ORTHO05D009644 1.3e-105 387.5 273 74.4
PSO591G0056 Papaver somniferum HOM05D007647 ORTHO05D009644 1.3e-105 387.5 262 71.0
Cfa009023 Carpinus fangiana HOM05D007647 ORTHO05D009644 6.2e-105 385.2 244 78.7
Peaxi162Scf00209g00222 Petunia axillaris HOM05D007647 ORTHO05D009644 6.2e-105 385.2 257 75.9
PGR119G2388 Punica granatum HOM05D007647 ORTHO05D009644 8.2e-105 384.8 291 69.4
AL6G31770 Arabidopsis lyrata HOM05D007647 ORTHO05D009644 3.1e-104 382.9 286 69.6
CiPaw.06G081300 Carya illinoinensis HOM05D007647 ORTHO05D009644 6.9e-104 381.7 301 67.4
PSO832G4528 Papaver somniferum HOM05D007647 ORTHO05D009644 1.5e-103 380.6 262 71.4
Thhalv10013726m.g Eutrema salsugineum HOM05D007647 ORTHO05D009644 2.0e-103 380.2 289 66.1
Sed0021599 Sechium edule HOM05D007647 ORTHO05D009644 2.6e-103 379.8 322 63.0
Eucgr.L00644 Eucalyptus grandis HOM05D007647 ORTHO05D009644 3.4e-103 379.4 301 65.1
Sp6g24190 Schrenkiella parvula HOM05D007647 ORTHO05D009644 5.8e-103 378.6 289 65.4
Ah.03g135420 Amaranthus hybridus HOM05D007647 ORTHO05D009644 1.7e-102 377.1 267 70.4
Gorai.013G077500 Gossypium raimondii HOM05D007647 ORTHO05D009644 1.7e-102 377.1 243 77.8
A10p19720 Brassica napus HOM05D007647 ORTHO05D009644 2.2e-102 376.7 290 65.9
BraA10t44047Z Brassica rapa HOM05D007647 ORTHO05D009644 2.9e-102 376.3 293 63.8
Migut.L01334 Erythranthe guttata HOM05D007647 ORTHO05D009644 3.8e-102 375.9 319 66.1
ECA234G4198 Erigeron canadensis HOM05D007647 ORTHO05D009644 4.9e-102 375.6 276 68.5
C09p56010 Brassica napus HOM05D007647 ORTHO05D009644 6.5e-102 375.2 288 66.0
BolC9t58468H Brassica oleracea HOM05D007647 ORTHO05D009644 6.5e-102 375.2 294 65.0
CARHR192610 Cardamine hirsuta HOM05D007647 ORTHO05D009644 6.5e-102 375.2 289 67.5
Gohir.D13G068000 Gossypium hirsutum HOM05D007647 ORTHO05D009644 1.1e-101 374.4 274 71.9
Potri.010G092600 Populus trichocarpa HOM05D007647 ORTHO05D009644 1.4e-101 374.0 244 77.9
Lalb_Chr05g0230251 Lupinus albus HOM05D007647 ORTHO05D009644 3.2e-101 372.9 243 75.3
AUR62028827 Chenopodium quinoa HOM05D007647 ORTHO05D009644 5.5e-101 372.1 234 77.8
Aa31LG1G14410 Aethionema arabicum HOM05D007647 ORTHO05D009644 9.3e-101 371.3 289 65.7
PGSC0003DMG400017644 Solanum tuberosum HOM05D007647 ORTHO05D009644 2.1e-100 370.2 331 60.1
VMungo0251G0888 Vigna mungo HOM05D007647 ORTHO05D009644 4.6e-100 369.0 242 75.2
MBI04_g10401_MAGBIO Magnolia biondii HOM05D007647 ORTHO05D009644 7.9e-100 368.2 236 77.1
Solyc05g007090.4 Solanum lycopersicum HOM05D007647 ORTHO05D009644 7.9e-100 368.2 331 59.8
EL10Ac7g17383 Beta vulgaris HOM05D007647 ORTHO05D009644 2.3e-99 366.7 292 65.8
AUR62005734 Chenopodium quinoa HOM05D007647 ORTHO05D009644 2.3e-99 366.7 294 65.3
HanXRQChr17g0570511 Helianthus annuus HOM05D007647 ORTHO05D009644 3.0e-99 366.3 261 70.1
Nitab4.5_0010498g0040 Nicotiana tabacum HOM05D007647 ORTHO05D009644 1.1e-98 364.4 251 72.9
AT5G20220 Arabidopsis thaliana HOM05D007647 ORTHO05D009644 1.5e-98 364.0 236 75.4
CAN.G279.15 Capsicum annuum HOM05D007647 ORTHO05D009644 1.5e-98 364.0 290 66.9
Hund05905 Selenicereus undatus HOM05D007647 ORTHO05D009644 2.4e-96 356.7 275 65.1
TPR.G33269 Trifolium pratense HOM05D007647 ORTHO05D009644 2.0e-95 353.6 256 70.3
Sabra10G0051000 Salix brachista HOM05D007647 ORTHO05D009644 2.6e-95 353.2 228 78.9
Lsat_1_v5_gn_4_8860 Lactuca sativa HOM05D007647 ORTHO05D009644 1.0e-94 351.3 296 61.8
Lj6A793T94 Lonicera japonica HOM05D007647 ORTHO05D009644 2.2e-94 350.1 224 77.7
Rhsim12G0058000 Rhododendron simsii HOM05D007647 ORTHO05D009644 1.0e-91 341.3 226 74.3
vmacro01233 Vaccinium macrocarpon HOM05D007647 ORTHO05D009644 1.0e-91 341.3 223 73.5
Eucgr.L01756 Eucalyptus grandis HOM05D007647 ORTHO05D009644 8.8e-91 338.2 272 65.1
Cc11_g13400 Coffea canephora HOM05D007647 ORTHO05D009644 2.4e-88 330.1 265 63.8
Carub.0006s1861 Capsella rubella HOM05D007647 ORTHO05D009644 2.1e-84 317.0 234 69.2
ATR1120G132 Amborella trichopoda HOM05D007647 ORTHO05D009644 3.6e-84 316.2 236 69.1
SEGI_16248 Sequoiadendron giganteum HOM05D007647 ORTHO05D009644 8.2e-81 305.1 243 59.7
HPP92_007641 Vanilla planifolia HOM05D007647 ORTHO05D009644 3.2e-77 293.1 199 70.9
Zm00001eb361470 Zea mays HOM05D007647 ORTHO05D009644 7.4e-74 282.0 209 66.5
QL03p065502 Quercus lobata HOM05D007647 ORTHO05D009644 2.2e-73 280.4 166 83.1
CDE06G0855 Ceratophyllum demersum HOM05D007647 ORTHO05D009644 2.3e-67 260.4 162 78.4
Dinv24961 Davidia involucrata HOM05D007647 ORTHO05D009644 1.2e-66 258.1 206 67.0
SGA_v2.0_scaffold46G17448 Striga asiatica HOM05D007647 ORTHO05D009644 4.4e-66 256.1 169 74.0
arahy.Tifrunner.gnm1.ann1.G93EFL Arachis hypogaea HOM05D007647 ORTHO05D009644 5.9e-63 245.7 244 53.7
arahy.Tifrunner.gnm1.ann1.RD16NV Arachis hypogaea HOM05D007647 ORTHO05D009644 1.0e-62 245.0 242 53.7
Psat0s2221g0040 Pisum sativum HOM05D007647 ORTHO05D009644 8.5e-62 241.9 170 72.4
Phvul.003G068801 Phaseolus vulgaris HOM05D007647 ORTHO05D009644 3.6e-60 236.5 172 70.3
Sopen05g003060 Solanum pennellii HOM05D007647 ORTHO05D009644 2.8e-57 226.9 204 60.8
Nitab4.5_0000879g0070 Nicotiana tabacum HOM05D007647 ORTHO05D009644 4.4e-50 203.0 129 78.3
Cpa.g.sc1007.5 Carica papaya HOM05D007647 ORTHO05D009644 1.4e-43 181.4 238 49.6
Pp3c16_24380 Physcomitrium patens HOM05D007647 ORTHO05D009644 1.5e-42 177.9 239 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2050 Anthoceros agrestis HOM05D007647 ORTHO05D009644 6.4e-41 172.6 187 47.6
CSS0017739 Camellia sinensis var. sinensis HOM05D007647 ORTHO05D009644 8.3e-33 145.6 82 82.9
SMO275G0007 Selaginella moellendorffii HOM05D007647 ORTHO05D009644 7.0e-32 142.5 162 46.3
CSS0049134 Camellia sinensis var. sinensis HOM05D007647 ORTHO05D009644 2.6e-26 124.0 74 77.0


User provided reference genes

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