Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 2265.3 1378 100.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 1983.8 1382 86.3
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1965.3 1382 85.2
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1964.9 1382 85.5
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1943.7 1381 84.7
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1937.5 1407 84.2
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1510.4 1397 67.8
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1458.7 1411 67.9
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1241.5 1427 59.8
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1226.5 1438 58.6
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1219.5 1506 55.6
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1195.6 1445 55.9
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1191.8 1436 57.3
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1175.2 1420 54.6
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1135.2 1408 56.3
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1134.4 1356 57.7
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1121.3 1463 53.2
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1108.2 1447 55.6
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1099.3 1422 54.7
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1092.4 1420 54.6
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1090.1 1377 53.2
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1086.6 1418 54.5
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 0.0e+00 1083.9 1480 53.6
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1079.7 1485 51.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 4.6e-309 1065.1 1513 51.7
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.1e-307 1060.4 1475 53.4
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.4e-305 1052.7 1438 52.9
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.0e-300 1037.3 1457 50.2
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.8e-300 1036.6 1428 53.1
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.3e-298 1030.4 1426 53.6
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 9.0e-297 1024.2 1459 51.1
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.2e-296 1023.8 1497 50.4
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.2e-296 1023.8 1431 53.5
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 2.2e-295 1019.6 1474 51.3
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.2e-288 997.3 1436 50.8
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 2.6e-288 996.1 1443 51.9
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.4e-284 983.8 1511 49.4
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 3.7e-282 975.7 1503 51.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 4.8e-282 975.3 1464 51.6
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 3.1e-281 972.6 1476 48.8
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 4.5e-280 968.8 1474 51.8
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 7.7e-280 968.0 1424 48.4
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 1.4e-276 957.2 1516 48.6
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.1e-275 954.1 1427 50.0
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 2.6e-275 953.0 1413 51.8
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 4.5e-272 942.2 1450 49.5
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.2e-271 939.9 1512 48.1
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 7.2e-270 934.9 1485 46.9
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 9.4e-270 934.5 1403 46.8
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 3.6e-269 932.6 1428 46.1
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 6.8e-260 901.7 1488 47.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.2e-259 901.0 1445 46.9
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 4.8e-258 895.6 1447 46.3
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 5.9e-256 888.6 1441 46.1
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 6.1e-253 878.6 1260 50.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 3.4e-251 872.8 1435 47.6
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 3.7e-250 869.4 1410 47.2
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 4.9e-250 869.0 1664 44.5
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 8.3e-250 868.2 1411 46.5
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 4.5e-248 862.4 1447 46.0
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 2.9e-247 859.8 1534 47.5
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 5.6e-246 855.5 1437 48.1
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 1.2e-245 854.4 1433 46.2
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 2.0e-243 847.0 1434 46.2
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 2.6e-243 846.7 706 68.7
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.7e-242 844.0 1430 48.1
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 4.9e-242 842.4 1400 44.1
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 1.7e-239 833.9 1478 44.1
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.6e-237 827.4 1439 47.7
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 4.7e-237 825.9 1189 51.5
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 1.8e-236 823.9 1450 44.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.3e-234 817.8 1336 44.5
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.1e-232 810.4 1471 44.9
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 5.6e-230 802.4 1492 41.9
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 4.7e-229 799.3 1411 44.5
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.3e-223 781.2 1457 45.7
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 2.3e-223 780.4 1479 43.4
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.3e-218 764.6 1485 42.3
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.5e-216 756.5 1475 41.9
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 7.8e-216 755.4 1468 43.1
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 2.5e-214 750.4 1228 45.8
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 8.1e-213 745.3 1428 44.5
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.1e-212 743.4 1431 44.2
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.1e-212 743.4 1431 44.2
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.5e-211 741.1 1431 44.4
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 5.8e-211 739.2 1443 42.9
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.2e-210 737.3 1431 44.2
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.1e-206 724.9 1400 42.1
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 9.6e-206 721.8 1419 41.9
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 2.1e-200 704.1 1484 42.8
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 2.7e-200 703.7 1383 46.9
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.8e-199 701.0 1455 40.8
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.2e-187 661.8 1038 44.8
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.7e-186 657.9 1469 42.1
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.4e-185 654.8 1429 39.1
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.3e-167 594.3 579 63.6
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 2.3e-167 594.3 1410 41.5
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.3e-157 562.0 1512 36.0
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.7e-152 544.3 1199 34.5
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 8.5e-146 522.7 1405 33.6
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.1e-140 505.8 1315 39.0
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 6.6e-138 496.5 1272 36.2
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 4.7e-136 490.3 1518 35.7
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.4e-135 488.8 758 45.6
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-125 455.3 1272 34.4
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.1e-124 452.6 566 51.6
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 2.9e-85 321.6 1431 31.9
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.9e-76 292.4 841 39.5
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.3e-69 269.6 1318 26.8
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.2e-67 263.1 331 56.2
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 8.5e-61 240.4 1456 28.7
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 2.1e-59 235.7 965 26.3
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.0e-58 231.9 1324 27.0
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 4.4e-57 228.0 271 40.2
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 2.1e-51 209.1 262 50.4
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 7.9e-51 207.2 1385 25.3
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 7.5e-41 174.1 377 39.5
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 5.0e-37 161.4 175 49.1
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.0e-34 153.7 472 39.6
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 8.8e-34 150.6 334 39.2
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 3.7e-32 145.2 90 84.4
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.6e-30 139.8 92 68.5
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 2.1e-27 129.4 167 52.7
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 4.7e-27 128.3 139 56.1
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.5e-25 123.2 90 74.4
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.2e-23 114.0 280 40.4
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.0e-21 110.5 112 54.5
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.0e-21 110.5 64 84.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 1.5e-20 106.7 785 26.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 9.5e-20 104.0 64 65.6
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-19 103.2 64 67.2
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.3e-18 99.4 125 48.8
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 4.9e-16 91.7 217 39.2
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 8.3e-16 90.9 301 29.2
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 3.2e-15 89.0 79 51.9
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 1.2e-14 87.0 55 63.6
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 3.3e-12 79.0 57 61.4
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 7.3e-12 77.8 296 22.0
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.3e-12 77.8 50 68.0
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-10 73.6 50 64.0
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 4.0e-10 72.0 145 33.1
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 5.2e-10 71.6 89 47.2
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.0e-09 69.7 75 50.7
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 3.4e-09 68.9 110 35.5
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.8e-09 67.4 94 40.4
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 9.8e-09 67.4 106 48.1
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 1.3e-08 67.0 152 41.4
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 3.2e-07 62.4 70 44.3
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.5e-06 58.9 338 31.7
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 6.0e-06 58.2 136 41.9


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