Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0436571 Rosa chinensis HOM05D000681 ORTHO05D036463 4.9e-70 267.7 135 100.0
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 4.8e-25 118.2 80 76.2
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 6.2e-25 117.9 80 76.2
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 1.8e-24 116.3 80 75.0
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 1.8e-24 116.3 80 75.0
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 1.8e-24 116.3 80 75.0
FAN28G1262 Fragaria x ananassa HOM05D000681 ORTHO05D005458 1.8e-24 116.3 80 75.0
RcHm_v2.0_Chr2g0116661 Rosa chinensis HOM05D000681 ORTHO05D005458 5.3e-24 114.8 63 88.9
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 2.0e-23 112.8 63 84.1
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 3.4e-23 112.1 63 81.0
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 3.4e-23 112.1 63 82.5
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 7.6e-23 110.9 80 68.8
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 7.6e-23 110.9 63 77.8
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 7.6e-23 110.9 63 82.5
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 9.9e-23 110.5 63 82.5
COL.COLO4_11004 Corchorus olitorius HOM05D000681 ORTHO05D005458 1.3e-22 110.2 63 79.4
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 1.7e-22 109.8 63 81.0
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 1.7e-22 109.8 63 81.0
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 1.7e-22 109.8 63 81.0
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 2.2e-22 109.4 63 77.8
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 2.2e-22 109.4 63 79.4
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 2.9e-22 109.0 63 77.8
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 2.9e-22 109.0 63 79.4
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 2.9e-22 109.0 85 67.1
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 2.9e-22 109.0 63 79.4
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 2.9e-22 109.0 63 77.8
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 2.9e-22 109.0 61 78.7
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 2.9e-22 109.0 63 79.4
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 3.8e-22 108.6 83 65.1
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 3.8e-22 108.6 63 79.4
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 4.9e-22 108.2 63 77.8
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 4.9e-22 108.2 63 79.4
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 4.9e-22 108.2 62 82.3
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 6.4e-22 107.8 63 76.2
Cpa.g.c37838 Carica papaya HOM05D000681 ORTHO05D005458 6.4e-22 107.8 61 82.0
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 6.4e-22 107.8 63 81.0
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 6.4e-22 107.8 63 79.4
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 8.4e-22 107.5 63 76.2
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 8.4e-22 107.5 63 76.2
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 8.4e-22 107.5 63 76.2
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 8.4e-22 107.5 81 64.2
AUR62000701 Chenopodium quinoa HOM05D000681 ORTHO05D005458 8.4e-22 107.5 62 79.0
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 8.4e-22 107.5 62 79.0
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 8.4e-22 107.5 62 79.0
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 8.4e-22 107.5 85 63.5
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 1.1e-21 107.1 63 74.6
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 1.1e-21 107.1 81 64.2
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 1.1e-21 107.1 81 64.2
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 1.1e-21 107.1 63 76.2
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 1.1e-21 107.1 80 66.2
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 1.1e-21 107.1 62 80.6
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 1.1e-21 107.1 80 65.0
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 1.1e-21 107.1 63 76.2
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 1.1e-21 107.1 85 63.5
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 1.1e-21 107.1 61 80.3
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 1.1e-21 107.1 93 63.4
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 1.4e-21 106.7 63 76.2
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 1.4e-21 106.7 63 76.2
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 1.4e-21 106.7 63 76.2
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 1.4e-21 106.7 63 76.2
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 1.4e-21 106.7 63 76.2
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 1.4e-21 106.7 61 80.3
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 1.4e-21 106.7 63 74.6
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 1.4e-21 106.7 61 80.3
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 1.9e-21 106.3 63 74.6
CARHR203400 Cardamine hirsuta HOM05D000681 ORTHO05D005458 1.9e-21 106.3 76 69.7
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 1.9e-21 106.3 63 77.8
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 1.9e-21 106.3 63 79.4
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 1.9e-21 106.3 63 77.8
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 1.9e-21 106.3 63 74.6
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 1.9e-21 106.3 63 74.6
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 77.8
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 2.4e-21 105.9 61 80.3
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 2.4e-21 105.9 81 64.2
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 77.8
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 2.4e-21 105.9 63 76.2
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 2.4e-21 105.9 83 63.9
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 2.4e-21 105.9 83 63.9
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 2.4e-21 105.9 80 63.8
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 3.2e-21 105.5 63 77.8
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 3.2e-21 105.5 63 77.8
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 3.2e-21 105.5 63 77.8
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 3.2e-21 105.5 63 74.6
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 4.2e-21 105.1 63 74.6
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 4.2e-21 105.1 63 74.6
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 4.2e-21 105.1 67 73.1
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 4.2e-21 105.1 63 76.2
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 4.2e-21 105.1 63 73.0
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 4.2e-21 105.1 63 73.0
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 4.2e-21 105.1 63 76.2
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 5.4e-21 104.8 63 76.2
Ah.06g189110 Amaranthus hybridus HOM05D000681 ORTHO05D005458 5.4e-21 104.8 62 79.0
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 5.4e-21 104.8 62 75.8
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 5.4e-21 104.8 63 74.6
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 5.4e-21 104.8 61 78.7
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 7.1e-21 104.4 63 76.2
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 7.1e-21 104.4 63 76.2
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 7.1e-21 104.4 80 65.0
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 9.3e-21 104.0 63 73.0
HPP92_013366 Vanilla planifolia HOM05D000681 ORTHO05D005458 9.3e-21 104.0 63 76.2
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 1.2e-20 103.6 63 74.6
MD01G1020500 Malus domestica HOM05D000681 ORTHO05D005458 1.2e-20 103.6 63 76.2
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 1.2e-20 103.6 61 80.3
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 1.6e-20 103.2 63 73.0
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 1.6e-20 103.2 63 77.8
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 1.6e-20 103.2 63 76.2
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 1.6e-20 103.2 83 61.4
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 1.6e-20 103.2 83 62.7
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 1.6e-20 103.2 83 62.7
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 1.6e-20 103.2 83 61.4
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 1.6e-20 103.2 83 62.7
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 1.6e-20 103.2 63 73.0
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 2.1e-20 102.8 63 76.2
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 2.1e-20 102.8 63 71.4
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 2.1e-20 102.8 61 78.7
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 2.1e-20 102.8 63 73.0
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 2.7e-20 102.4 61 77.0
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 2.7e-20 102.4 63 74.6
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 3.5e-20 102.1 63 74.6
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 1.0e-19 100.5 63 73.0
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 1.0e-19 100.5 63 71.4
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 1.0e-19 100.5 63 71.4
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 1.0e-19 100.5 93 57.0
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 2.3e-19 99.4 63 69.8
Pp3c2_22140 Physcomitrium patens HOM05D000681 ORTHO05D005458 3.9e-19 98.6 63 68.3
Lsat_1_v5_gn_5_38441 Lactuca sativa HOM05D000681 ORTHO05D036463 1.1e-18 97.1 61 70.5
SEGI_26301 Sequoiadendron giganteum HOM05D000681 ORTHO05D036463 3.3e-18 95.5 61 70.5
SMO358G0544 Selaginella moellendorffii HOM05D000681 ORTHO05D005458 4.3e-18 95.1 63 65.1
AagrBONN_evm.TU.Sc2ySwM_228.474 Anthoceros agrestis HOM05D000681 ORTHO05D005458 1.3e-17 93.6 62 64.5
CBR_g20265 Chara braunii HOM05D000681 ORTHO05D005458 3.6e-17 92.0 63 61.9
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 8.1e-17 90.9 51 80.4
AagrBONN_evm.TU.Sc2ySwM_228.4630 Anthoceros agrestis HOM05D000681 ORTHO05D005458 1.1e-16 90.5 61 63.9
Mapoly0003s0123 Marchantia polymorpha HOM05D000681 ORTHO05D005458 1.5e-15 86.7 80 52.5
Pp3c19_17230 Physcomitrium patens HOM05D000681 ORTHO05D005458 1.5e-15 86.7 63 57.1
QL06p031769 Quercus lobata HOM05D000681 ORTHO05D005458 2.0e-15 86.3 51 78.4
Cre08.g372250 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D005458 1.7e-14 83.2 61 63.9
PRCOL_00003140 Prasinoderma coloniale HOM05D000681 ORTHO05D005458 1.3e-11 73.6 86 41.9
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 2.3e-11 72.8 56 62.5
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 2.5e-10 69.3 40 77.5
MCO11G006 Micromonas commoda HOM05D000681 ORTHO05D005458 7.4e-10 67.8 64 46.9
RcHm_v2.0_Chr2g0116831 Rosa chinensis HOM05D000681 ORTHO05D005458 3.4e-07 58.9 29 93.1
Lsat_1_v5_gn_5_165121 Lactuca sativa HOM05D000068 ORTHO05D009371 5.8e-07 58.2 58 37.9
MELO3C009480.2 Cucumis melo HOM05D000068 ORTHO05D009371 7.6e-07 57.8 60 40.0
ClCG10G018880 Citrullus lanatus HOM05D000068 ORTHO05D009371 1.3e-06 57.0 61 37.7
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.3e-06 57.0 84 27.4
Gohir.A04G062000 Gossypium hirsutum HOM05D000068 ORTHO05D009371 1.7e-06 56.6 54 38.9
Gorai.009G401200 Gossypium raimondii HOM05D000068 ORTHO05D009371 1.7e-06 56.6 54 38.9
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 2.9e-06 55.8 76 36.8
ECA248G3626 Erigeron canadensis HOM05D000068 ORTHO05D009371 3.8e-06 55.5 50 42.0
CiPaw.10G010800 Carya illinoinensis HOM05D000068 ORTHO05D009371 4.9e-06 55.1 51 41.2
Glyma.10G073800 Glycine max HOM05D000068 ORTHO05D009371 4.9e-06 55.1 53 43.4
MSTRG.1177 Avicennia marina HOM05D000068 ORTHO05D000084 6.5e-06 54.7 52 42.3
HanXRQChr02g0032661 Helianthus annuus HOM05D000068 ORTHO05D009371 6.5e-06 54.7 51 39.2
arahy.Tifrunner.gnm1.ann1.32L6HG Arachis hypogaea HOM05D000068 ORTHO05D009371 8.4e-06 54.3 45 46.7
arahy.Tifrunner.gnm1.ann1.F7MRFZ Arachis hypogaea HOM05D000068 ORTHO05D009371 8.4e-06 54.3 45 46.7
CBR_g47104 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-06 54.3 58 44.8
COL.COLO4_26122 Corchorus olitorius HOM05D000068 ORTHO05D000084 8.4e-06 54.3 52 44.2
Duzib093G0600 Durio zibethinus HOM05D000068 ORTHO05D009371 8.4e-06 54.3 54 38.9
RcHm_v2.0_Chr3g0474121 Rosa chinensis HOM05D000068 ORTHO05D009371 8.4e-06 54.3 45 46.7
Sc02g0000310 Simmondsia chinensis HOM05D000068 ORTHO05D009371 8.4e-06 54.3 53 39.6


User provided reference genes

Program Settings