Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 1.1e-119 433.3 227 100.0
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 2.6e-108 395.6 223 91.9
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 8.6e-104 380.6 242 84.7
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.7e-99 366.3 223 85.7
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 2.1e-97 359.4 225 81.3
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.1e-96 354.8 235 81.3
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 6.6e-96 354.4 225 79.6
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 6.6e-96 354.4 225 80.4
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 8.7e-96 354.0 224 79.9
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 1.9e-95 352.8 225 80.4
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 2.5e-95 352.4 225 78.7
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 5.6e-95 351.3 225 79.1
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 5.6e-95 351.3 225 79.6
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 1.3e-94 350.1 224 79.9
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 1.6e-94 349.7 225 79.1
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 1.6e-94 349.7 225 79.1
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 4.8e-94 348.2 216 83.3
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 4.8e-94 348.2 224 80.8
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 6.2e-94 347.8 225 78.7
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 1.1e-93 347.1 225 80.0
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 1.1e-93 347.1 225 75.6
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 1.8e-93 346.3 225 77.3
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 2.4e-93 345.9 225 78.7
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 3.1e-93 345.5 225 77.3
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 3.1e-93 345.5 225 77.8
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 4.0e-93 345.1 225 77.8
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 2.0e-92 342.8 225 76.9
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 2.0e-92 342.8 225 78.2
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 5.8e-92 341.3 225 76.9
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 9.9e-92 340.5 225 76.9
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 9.9e-92 340.5 225 76.9
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 1.3e-91 340.1 235 74.5
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 2.2e-91 339.3 227 76.7
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 2.2e-91 339.3 227 76.7
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 2.2e-91 339.3 227 76.7
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 6.4e-91 337.8 225 76.9
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 1.1e-90 337.0 224 76.8
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 1.4e-90 336.7 224 76.3
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 1.9e-90 336.3 225 76.9
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 1.9e-90 336.3 224 75.4
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 2.4e-90 335.9 225 75.6
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 2.4e-90 335.9 225 74.7
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 3.2e-90 335.5 225 76.0
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 3.2e-90 335.5 225 75.1
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 4.2e-90 335.1 225 73.8
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 4.2e-90 335.1 225 73.8
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 2.7e-89 332.4 225 75.1
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 3.5e-89 332.0 225 75.6
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 7.8e-89 330.9 225 75.1
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 1.0e-88 330.5 226 75.7
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 5.1e-88 328.2 225 75.1
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 1.9e-87 326.2 224 74.1
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 2.5e-87 325.9 225 72.9
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 9.6e-87 323.9 224 73.2
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 1.3e-86 323.6 225 75.1
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 2.8e-86 322.4 208 78.8
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 3.6e-86 322.0 265 65.7
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 4.8e-86 321.6 224 72.3
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 6.2e-86 321.2 224 71.9
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 6.2e-86 321.2 224 73.2
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 8.1e-86 320.9 224 73.2
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 1.4e-85 320.1 224 72.8
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 2.4e-85 319.3 250 66.0
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 9.0e-85 317.4 225 73.3
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 2.0e-84 316.2 225 69.3
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 2.6e-84 315.8 224 74.6
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 4.5e-84 315.1 225 68.9
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 5.8e-84 314.7 257 65.0
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 1.3e-83 313.5 225 72.4
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 3.8e-83 312.0 225 68.9
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 4.9e-83 311.6 224 69.6
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 6.4e-83 311.2 225 68.9
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 2.4e-82 309.3 224 72.8
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 5.4e-82 308.1 225 68.4
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 7.1e-82 307.8 226 70.4
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 9.3e-82 307.4 225 68.4
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 1.2e-81 307.0 224 71.4
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 4.6e-81 305.1 225 70.7
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 7.9e-81 304.3 225 67.6
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 7.9e-81 304.3 225 67.6
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 3.0e-80 302.4 245 68.2
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 3.0e-80 302.4 225 69.3
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 3.9e-80 302.0 225 67.1
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 3.9e-80 302.0 225 67.1
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 3.9e-80 302.0 225 67.1
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 3.9e-80 302.0 207 74.4
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 5.1e-80 301.6 208 71.2
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 5.6e-79 298.1 194 78.4
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 9.6e-79 297.4 225 69.3
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 1.7e-75 286.6 225 66.7
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 1.7e-75 286.6 203 72.9
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 5.5e-74 281.6 225 64.9
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 2.7e-73 279.3 225 63.1
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 1.0e-72 277.3 195 73.8
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 1.8e-72 276.6 207 68.1
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 4.3e-71 271.9 222 64.4
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 5.7e-71 271.6 213 66.2
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 2.1e-70 269.6 207 66.2
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 8.4e-67 257.7 193 67.4
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 6.1e-65 251.5 223 60.1
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 3.3e-63 245.7 222 59.9
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 7.4e-63 244.6 222 59.0
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 7.4e-63 244.6 222 59.0
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 2.6e-60 236.1 221 55.2
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 8.8e-56 221.1 216 51.9
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 1.9e-50 203.4 213 51.2
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 1.8e-48 196.8 184 60.9
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 1.2e-44 184.1 139 67.6
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 3.5e-44 182.6 195 47.7
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 4.8e-38 162.2 210 49.0
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 4.0e-32 142.5 163 54.6
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 6.3e-30 135.2 99 71.7
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 4.5e-28 129.0 94 61.7
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 1.0e-16 91.3 194 30.4
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 1.2e-15 87.8 220 27.3
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 1.2e-09 67.8 106 47.2
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 1.6e-09 67.4 232 26.3
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 1.8e-08 63.9 95 46.3


User provided reference genes

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