Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 4.8e-126 454.5 233 100.0
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 9.8e-119 430.3 233 94.8
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-115 419.5 233 93.6
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.5e-108 395.2 233 88.8
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.2e-97 357.8 264 76.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.3e-88 329.3 237 70.0
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 7.3e-74 281.2 225 65.3
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 8.1e-73 277.7 223 66.4
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 3.1e-72 275.8 227 63.9
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 2.0e-71 273.1 231 62.8
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.6e-71 272.7 188 73.4
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 7.6e-71 271.2 224 62.5
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 6.4e-70 268.1 237 60.8
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 4.2e-69 265.4 232 62.1
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 9.3e-69 264.2 224 62.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.2e-68 263.8 224 61.2
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.7e-68 262.7 224 61.6
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 2.7e-68 262.7 164 86.0
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 7.8e-68 261.2 260 55.8
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.1e-66 257.3 236 57.6
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 4.3e-66 255.4 225 60.4
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.3e-66 254.6 232 57.3
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 9.6e-66 254.2 191 67.5
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 2.8e-65 252.7 230 57.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 3.6e-65 252.3 221 61.1
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 6.2e-65 251.5 221 61.1
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.4e-64 249.6 231 58.9
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.1e-64 249.2 232 57.3
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 4.0e-64 248.8 232 57.8
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 9.0e-64 247.7 231 58.0
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.5e-63 246.9 232 56.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 2.6e-63 246.1 225 57.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 4.5e-63 245.4 230 57.0
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 5.8e-63 245.0 231 57.1
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 7.6e-63 244.6 231 57.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 9.9e-63 244.2 231 57.1
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 9.9e-63 244.2 231 57.1
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 9.9e-63 244.2 202 63.4
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.3e-62 243.8 218 59.6
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.3e-62 243.8 222 60.8
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.7e-62 243.4 256 53.1
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.7e-62 243.4 221 58.8
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.2e-62 243.0 226 58.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.2e-62 243.0 226 54.9
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.8e-62 242.3 225 58.2
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 4.9e-62 241.9 199 64.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.9e-62 241.9 221 58.8
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.4e-62 241.1 226 58.0
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.1e-61 240.7 234 54.3
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.4e-61 240.4 241 54.4
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.4e-61 240.4 235 54.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.4e-61 240.4 225 59.1
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.4e-61 240.4 231 55.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.4e-61 239.6 232 55.6
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 3.2e-61 239.2 225 57.8
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.2e-61 238.8 238 54.6
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 4.2e-61 238.8 235 53.6
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 5.4e-61 238.4 233 54.5
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 7.1e-61 238.0 232 54.7
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.2e-60 237.3 235 53.6
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.2e-60 237.3 235 53.6
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 6.0e-60 235.0 219 57.1
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 7.9e-60 234.6 208 63.0
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.8e-59 233.4 215 59.5
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.3e-59 233.0 237 53.2
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 5.1e-59 231.9 229 55.9
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 8.7e-59 231.1 217 58.1
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.1e-58 230.7 223 58.3
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.1e-58 230.7 232 53.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.5e-58 230.3 243 53.9
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.5e-58 229.6 231 54.1
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 4.3e-58 228.8 223 58.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 7.4e-58 228.0 233 53.6
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 9.6e-58 227.6 229 55.0
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 9.6e-58 227.6 222 53.2
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.8e-57 226.1 345 42.0
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 4.8e-57 225.3 222 52.7
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 8.1e-57 224.6 215 55.8
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 8.1e-57 224.6 235 54.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.4e-56 223.8 221 54.8
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.4e-56 223.8 230 55.7
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.8e-56 223.4 221 55.2
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.1e-56 222.6 221 54.8
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 4.0e-56 222.2 206 57.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 5.3e-56 221.9 229 53.7
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.0e-55 219.9 229 53.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-55 219.9 143 83.9
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.6e-55 219.5 191 61.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.2e-54 216.5 154 71.4
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 8.4e-54 214.5 235 51.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 4.2e-53 212.2 212 55.2
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 7.1e-53 211.5 224 54.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 9.3e-53 211.1 232 53.4
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.6e-52 208.8 219 49.8
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.5e-50 203.0 212 54.2
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 8.2e-49 198.0 224 51.3
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.4e-48 197.2 169 59.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.8e-48 196.8 232 48.7
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 2.6e-47 193.0 152 65.1
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.9e-46 189.5 165 59.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-45 187.6 199 53.3
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 7.1e-45 184.9 146 67.1
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.6e-44 182.2 208 48.1
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.0e-44 181.8 170 59.4
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.0e-43 181.0 168 60.1
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.3e-43 179.9 208 50.5
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 3.0e-43 179.5 227 44.1
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 3.9e-43 179.1 234 44.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 5.1e-43 178.7 311 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.6e-41 173.7 211 43.6
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 4.8e-41 172.2 173 58.4
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.1e-40 171.0 92 95.7
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.4e-40 169.9 215 43.7
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 6.9e-40 168.3 273 41.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.3e-38 164.1 227 39.6
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.2e-38 163.3 164 56.1
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.0e-38 162.2 231 41.6
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 8.5e-38 161.4 115 69.6
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.0e-35 154.5 114 69.3
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.4e-32 143.3 236 39.0
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.4e-32 143.3 238 41.2
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 9.1e-32 141.4 99 77.8
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.2e-30 136.7 142 48.6
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.3e-25 120.9 189 45.0
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 3.7e-25 119.4 84 79.8
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 3.2e-21 106.3 159 39.6
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.2e-21 105.1 130 46.9
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.0e-19 99.8 100 54.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 5.2e-19 99.0 94 58.5
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 3.3e-18 96.3 234 32.9
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.8e-16 90.5 210 32.4
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 1.8e-16 90.5 213 29.1
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.5e-14 82.0 187 35.8
FAN22G0646 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.5e-14 82.0 80 60.0
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.5e-13 80.1 58 70.7
FAN07G1665 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.5e-13 79.0 38 97.4
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.0e-11 74.7 225 28.4
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.0e-11 74.7 66 60.6
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 1.4e-11 74.3 73 56.2
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 7.5e-10 68.6 77 51.9
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 7.5e-10 68.6 77 51.9
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 3.7e-09 66.2 225 26.7
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.6e-07 60.8 66 48.5
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 2.0e-07 60.5 177 28.2
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.0e-06 55.8 42 64.3
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 8.5e-06 55.1 40 62.5


User provided reference genes

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