Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 0.0e+00 1214.1 653 100.0
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 0.0e+00 1095.9 653 91.3
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 0.0e+00 1084.3 672 88.7
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 0.0e+00 1077.4 674 87.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 0.0e+00 1077.4 672 88.4
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.4e-263 912.9 673 75.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 8.4e-261 903.7 677 74.9
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.5e-249 866.3 673 71.8
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 7.7e-238 827.4 669 68.3
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.6e-235 819.7 672 67.4
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 5.3e-231 804.7 678 65.9
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 4.5e-230 801.6 681 65.2
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.9e-229 798.9 680 65.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 5.0e-229 798.1 673 64.8
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.6e-227 793.1 700 64.0
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 6.7e-226 787.7 696 63.6
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.4e-225 785.0 696 63.5
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 7.5e-225 784.3 665 65.4
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.3e-224 783.5 679 64.5
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.3e-224 783.5 667 64.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.8e-224 781.6 665 65.7
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.8e-223 779.6 673 64.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.8e-223 779.6 664 64.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 3.1e-223 778.9 672 64.3
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.7e-222 775.8 666 65.2
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.9e-221 772.3 672 63.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 5.0e-221 771.5 663 65.2
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 6.5e-221 771.2 669 64.6
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.2e-219 766.9 666 63.2
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 2.7e-219 765.8 698 61.9
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 3.6e-219 765.4 665 63.8
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 8.0e-219 764.2 666 63.1
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.0e-218 763.8 668 64.4
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.0e-218 763.8 663 63.5
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 4.0e-218 761.9 677 63.2
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.0e-218 761.9 688 62.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 8.8e-218 760.8 675 63.4
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.5e-217 760.0 699 61.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 3.4e-217 758.8 653 64.2
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 3.4e-217 758.8 670 64.2
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 4.8e-216 755.0 671 64.1
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.1e-215 753.8 628 64.3
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 5.9e-214 748.0 663 63.2
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 7.7e-214 747.7 668 62.0
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 7.7e-214 747.7 652 63.2
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.5e-212 741.5 654 63.8
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 7.2e-212 741.1 675 62.7
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 9.5e-212 740.7 675 62.5
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 9.5e-212 740.7 595 65.9
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.5e-209 733.4 679 60.2
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.5e-209 733.4 594 66.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 2.0e-209 733.0 646 61.8
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.0e-209 733.0 572 67.3
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 1.1e-207 727.2 607 64.4
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-207 727.2 655 61.2
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 3.1e-207 725.7 656 61.0
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 3.1e-207 725.7 671 61.3
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.0e-206 723.0 637 61.4
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.7e-205 719.9 683 60.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 2.9e-205 719.2 663 59.6
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.6e-203 713.4 647 61.8
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.0e-202 710.7 659 59.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.0e-202 708.8 678 59.1
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.9e-202 707.6 648 60.6
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 3.4e-201 705.7 662 59.4
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 4.4e-201 705.3 662 59.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 4.4e-201 705.3 649 59.8
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.4e-201 705.3 649 59.8
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 9.8e-201 704.1 668 58.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.9e-200 702.6 621 61.0
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.9e-200 701.8 660 59.4
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.4e-199 700.3 662 59.4
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 5.4e-199 698.4 660 59.7
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 7.0e-199 698.0 653 59.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 7.0e-199 698.0 650 59.7
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 9.2e-199 697.6 658 59.0
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.6e-198 696.8 683 59.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.6e-198 696.8 673 59.4
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.5e-196 690.3 670 59.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.9e-196 689.9 639 60.3
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 6.2e-195 684.9 662 60.0
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.4e-194 683.7 653 58.2
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 2.2e-192 676.4 658 57.8
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 2.9e-192 676.0 655 58.0
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.9e-192 675.2 684 56.4
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 4.1e-191 672.2 646 58.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 7.0e-191 671.4 560 63.4
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.6e-185 652.9 618 60.7
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 4.1e-183 645.6 647 56.9
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.5e-180 636.3 648 57.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 3.3e-180 636.0 665 55.8
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.6e-179 633.6 528 62.7
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.6e-177 626.3 649 54.9
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 2.6e-177 626.3 622 59.8
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.4e-177 625.9 678 55.6
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.3e-176 624.0 657 56.5
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.8e-174 614.8 665 54.3
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.9e-173 612.5 603 60.7
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 1.5e-169 600.5 683 54.5
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 9.9e-169 597.8 665 52.0
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.3e-148 529.6 461 65.9
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.8e-144 516.2 286 92.7
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.7e-142 510.0 535 53.1
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 7.7e-137 491.9 586 46.2
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 2.2e-131 473.8 639 45.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 3.4e-129 466.5 692 42.8
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 7.7e-121 438.7 359 64.1
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 6.5e-120 435.6 685 41.3
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 9.4e-111 405.2 635 43.1
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 4.2e-103 379.8 552 44.9
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 5.7e-100 369.4 425 55.5
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 7.0e-98 362.5 406 53.2
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.8e-96 356.7 661 35.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.9e-93 345.5 314 58.3
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 4.1e-90 336.7 373 53.9
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.9e-83 313.2 270 64.1
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 7.1e-74 282.7 382 44.8
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.9e-63 248.1 642 29.8
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 4.4e-60 236.9 702 27.6
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 8.7e-56 222.6 146 72.6
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.9e-51 207.6 250 49.6
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 5.4e-50 203.4 240 49.6
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.9e-48 197.2 210 57.1
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 2.0e-44 184.9 232 47.8
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 5.8e-44 183.3 232 47.4
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 6.0e-41 173.3 650 26.0
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 9.6e-39 166.0 130 59.2
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 2.4e-37 161.4 103 74.8
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 9.3e-34 149.4 195 46.7
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.8e-30 137.9 83 77.1
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 8.2e-30 136.3 95 68.4
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.4e-29 135.6 210 40.5
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 9.0e-29 132.9 117 62.4
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.4e-26 125.6 168 44.6
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 7.2e-26 123.2 146 50.0
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 7.9e-25 119.8 282 30.5
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 4.6e-17 94.0 160 42.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 3.9e-16 90.9 77 66.2
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 8.8e-16 89.7 113 43.4
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 7.4e-15 86.7 142 38.0
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 7.4e-15 86.7 142 38.0
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 7.4e-15 86.7 142 38.0
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.7e-14 85.5 142 37.3
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.7e-14 85.5 142 37.3
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.2e-14 85.1 142 37.3
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 3.7e-14 84.3 133 42.1
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.0e-11 76.3 126 45.2
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.2e-11 75.1 108 45.4
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 6.1e-09 67.0 138 34.8
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 2.6e-07 61.6 52 51.9
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 2.6e-07 61.6 52 51.9


User provided reference genes

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