Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 6.8e-193 677.2 348 100.0
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 3.0e-172 608.6 354 89.3
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 4.2e-166 588.2 347 86.7
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.0e-159 567.0 352 85.5
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 5.7e-155 551.2 349 80.5
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 9.0e-153 543.9 351 80.6
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.0e-152 542.7 333 86.5
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 2.3e-148 529.3 347 79.8
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 2.0e-139 499.6 357 72.3
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 5.3e-137 491.5 308 77.6
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 2.6e-136 489.2 340 73.5
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.5e-134 483.4 356 72.5
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 9.4e-134 480.7 348 73.0
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.1e-133 479.6 358 68.7
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 8.0e-133 477.6 309 78.3
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 8.0e-133 477.6 365 69.3
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 1.4e-132 476.9 362 70.7
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 5.2e-132 474.9 306 76.5
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 1.5e-131 473.4 309 76.1
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 2.2e-130 469.5 365 68.8
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 3.7e-130 468.8 366 68.3
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.7e-130 468.8 305 74.8
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 8.2e-130 467.6 362 65.7
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.1e-129 467.2 362 66.9
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 2.4e-129 466.1 305 75.1
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 3.1e-129 465.7 301 76.1
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 7.0e-129 464.5 305 75.1
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.2e-128 463.8 362 66.6
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 2.0e-128 463.0 303 76.2
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.7e-128 462.6 360 70.3
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 5.9e-128 461.5 369 66.9
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 7.7e-128 461.1 303 75.9
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 7.7e-128 461.1 362 68.2
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 1.0e-127 460.7 366 69.9
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 2.9e-127 459.1 302 73.8
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 1.5e-126 456.8 361 67.6
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 2.5e-126 456.1 302 74.5
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.5e-126 456.1 350 68.0
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 3.2e-126 455.7 363 66.4
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 3.2e-126 455.7 307 75.2
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 5.5e-126 454.9 302 74.5
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 7.2e-126 454.5 360 67.5
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 7.2e-126 454.5 301 74.4
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 7.2e-126 454.5 359 65.7
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 9.4e-126 454.1 345 68.7
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 9.4e-126 454.1 359 65.7
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 1.2e-125 453.8 347 68.0
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 2.1e-125 453.0 302 74.2
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 2.1e-125 453.0 302 74.2
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 2.1e-125 453.0 301 74.4
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 2.7e-125 452.6 301 73.4
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 2.7e-125 452.6 306 73.9
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 4.7e-125 451.8 301 73.8
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 4.7e-125 451.8 299 73.9
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 6.1e-125 451.4 356 67.7
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 6.1e-125 451.4 349 69.6
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.0e-124 450.7 301 73.4
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 1.0e-124 450.7 298 74.5
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 5.2e-124 448.4 299 75.3
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 5.2e-124 448.4 302 73.8
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 1.5e-123 446.8 393 61.3
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 2.0e-123 446.4 346 68.8
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 2.0e-123 446.4 289 77.2
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 4.4e-123 445.3 302 72.5
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 4.4e-123 445.3 349 65.6
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 5.7e-123 444.9 349 69.3
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 5.7e-123 444.9 345 66.7
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 9.8e-123 444.1 346 69.1
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.3e-122 443.7 360 68.1
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 2.8e-122 442.6 350 66.3
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 8.3e-122 441.0 360 64.7
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 8.3e-122 441.0 350 66.3
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.2e-120 437.2 358 66.8
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 2.7e-120 436.0 353 67.1
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.3e-119 433.7 303 70.0
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 2.9e-119 432.6 355 66.8
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 5.0e-119 431.8 304 71.1
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 5.5e-118 428.3 353 66.3
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 3.6e-117 425.6 359 64.3
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 1.0e-116 424.1 281 72.2
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 2.6e-115 419.5 308 67.5
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 4.4e-115 418.7 247 80.6
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 1.3e-114 417.2 360 61.9
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 2.2e-114 416.4 309 66.7
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 3.1e-113 412.5 286 71.7
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 1.0e-111 407.5 297 68.0
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 2.1e-109 399.8 299 70.9
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 5.2e-108 395.2 339 63.7
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 3.4e-107 392.5 305 63.6
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 1.4e-105 387.1 350 59.4
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 8.0e-101 371.3 299 65.9
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 8.0e-101 371.3 360 58.3
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 1.0e-100 370.9 245 74.3
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.5e-99 367.1 262 66.4
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 9.8e-99 364.4 290 65.5
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 1.9e-94 350.1 266 66.2
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 5.8e-91 338.6 300 59.3
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 9.2e-89 331.3 307 56.4
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 7.8e-88 328.2 305 53.1
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 1.9e-86 323.6 298 54.4
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 6.8e-84 315.1 305 58.0
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 1.2e-83 314.3 211 83.4
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 9.2e-81 304.7 314 56.4
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 6.2e-77 292.0 348 53.2
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.1e-73 281.2 279 53.0
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 3.0e-71 273.1 330 46.7
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 3.2e-65 253.1 201 65.2
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.3e-63 246.9 295 50.8
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.5e-62 243.4 234 55.1
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 8.4e-58 228.4 171 68.4
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 2.4e-52 210.3 199 61.8
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 1.2e-48 198.0 368 36.1
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 4.6e-48 196.1 182 59.9
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 1.2e-43 181.4 190 53.2
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 4.5e-43 179.5 352 34.1
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 1.0e-42 178.3 183 55.7
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 5.0e-42 176.0 118 71.2
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 1.7e-29 134.4 77 84.4
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 3.6e-16 90.1 63 69.8
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 4.5e-11 73.2 77 57.1
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 1.0e-10 72.0 83 43.4
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 6.5e-10 69.3 45 66.7
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.5e-09 67.4 100 39.0
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 3.2e-09 67.0 36 80.6
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.2e-09 66.6 47 70.2
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.2e-09 66.6 43 76.7
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 5.5e-09 66.2 47 76.6
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 8.8e-07 58.9 38 76.3


User provided reference genes

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