Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0400641 Rosa chinensis HOM05D003275 ORTHO05D345639 1.3e-42 176.0 93 100.0
RcHm_v2.0_Chr1g0326971 Rosa chinensis HOM05D003275 ORTHO05D341450 6.6e-42 173.7 92 98.9
RcHm_v2.0_Chr5g0035441 Rosa chinensis HOM05D003275 ORTHO05D346868 1.7e-18 95.9 54 94.4
RcHm_v2.0_Chr6g0311011 Rosa chinensis HOM05D003275 ORTHO05D003732 2.1e-11 72.4 42 90.5
FAN15G3499 Fragaria x ananassa HOM05D003275 ORTHO05D003732 3.5e-11 71.6 42 88.1
FvH4_2g31810 Fragaria vesca HOM05D003275 ORTHO05D003732 1.0e-10 70.1 42 85.7
FAN24G1665 Fragaria x ananassa HOM05D003275 ORTHO05D003732 1.0e-10 70.1 42 85.7
MD15G1059000 Malus domestica HOM05D003275 ORTHO05D003732 1.0e-10 70.1 42 85.7
Prupe.1G411500 Prunus persica HOM05D003275 ORTHO05D003732 3.0e-10 68.6 42 85.7
MD08G1062700 Malus domestica HOM05D003275 ORTHO05D003732 1.5e-09 66.2 42 81.0
TAR383G0517 Trochodendron aralioides HOM05D003275 ORTHO05D003732 4.3e-09 64.7 42 73.8
Thecc.09G054400 Theobroma cacao HOM05D003275 ORTHO05D003732 9.6e-09 63.5 41 75.6
Duzib168G2080 Durio zibethinus HOM05D003275 ORTHO05D003732 1.6e-08 62.8 41 73.2
Sabra06G0177100 Salix brachista HOM05D003275 ORTHO05D003732 3.6e-08 61.6 41 75.6
Gohir.D06G086800 Gossypium hirsutum HOM05D003275 ORTHO05D003732 4.8e-08 61.2 41 70.7
Gorai.010G100200 Gossypium raimondii HOM05D003275 ORTHO05D003732 4.8e-08 61.2 41 70.7
Manes.03G048000 Manihot esculenta HOM05D003275 ORTHO05D003732 8.1e-08 60.5 39 76.9
QL02p001118 Quercus lobata HOM05D003275 ORTHO05D003732 1.1e-07 60.1 39 79.5
Gohir.D06G126566 Gossypium hirsutum HOM05D003275 ORTHO05D003732 1.4e-07 59.7 41 68.3
Gohir.A06G087400 Gossypium hirsutum HOM05D003275 ORTHO05D003732 2.4e-07 58.9 41 68.3
BcaC04g19190 Brassica carinata HOM05D003275 ORTHO05D003732 3.1e-07 58.5 41 68.3
C09p64990 Brassica napus HOM05D003275 ORTHO05D003732 3.1e-07 58.5 41 68.3
BolC9t59327H Brassica oleracea HOM05D003275 ORTHO05D003732 3.1e-07 58.5 41 68.3
arahy.Tifrunner.gnm1.ann1.32MGU6 Arachis hypogaea HOM05D003275 ORTHO05D003732 4.0e-07 58.2 42 69.0
arahy.Tifrunner.gnm1.ann1.WQ6HRD Arachis hypogaea HOM05D003275 ORTHO05D003732 4.0e-07 58.2 42 69.0
Dinv27990 Davidia involucrata HOM05D003275 ORTHO05D003732 6.9e-07 57.4 42 66.7
AT5G11870 Arabidopsis thaliana HOM05D003275 ORTHO05D003732 9.0e-07 57.0 41 65.9
A10p25900 Brassica napus HOM05D003275 ORTHO05D003732 9.0e-07 57.0 41 65.9
BraA10t44653Z Brassica rapa HOM05D003275 ORTHO05D003732 9.0e-07 57.0 41 65.9
Haze_18178 Corylus avellana HOM05D003275 ORTHO05D003732 9.0e-07 57.0 42 66.7
Haze_18185 Corylus avellana HOM05D003275 ORTHO05D003732 9.0e-07 57.0 42 66.7
PGR031G0256 Punica granatum HOM05D003275 ORTHO05D003732 9.0e-07 57.0 42 64.3
Sp6g31730 Schrenkiella parvula HOM05D003275 ORTHO05D003732 9.0e-07 57.0 41 65.9
Nn6g35489 Nelumbo nucifera HOM05D003275 ORTHO05D003732 1.2e-06 56.6 42 69.0
Phvul.009G077800 Phaseolus vulgaris HOM05D003275 ORTHO05D003732 1.5e-06 56.2 42 69.0
AL6G22630 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 2.0e-06 55.8 41 65.9
Thhalv10014390m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 2.0e-06 55.8 41 63.4
Eucgr.C00652 Eucalyptus grandis HOM05D003275 ORTHO05D003732 2.6e-06 55.5 42 69.0
Aa31LG3G15330 Aethionema arabicum HOM05D003275 ORTHO05D003732 4.4e-06 54.7 41 63.4
TPR.G13175 Trifolium pratense HOM05D003275 ORTHO05D003732 4.4e-06 54.7 42 64.3
VMungo1309G2424 Vigna mungo HOM05D003275 ORTHO05D003732 4.4e-06 54.7 42 66.7
Atru.chr7.1081 Acer truncatum HOM05D003275 ORTHO05D003732 7.6e-06 53.9 41 68.3
CANSAT25G2318 Cannabis sativa HOM05D003275 ORTHO05D003732 7.6e-06 53.9 42 64.3
Carub.0006s1040 Capsella rubella HOM05D003275 ORTHO05D003732 7.6e-06 53.9 41 63.4
Medtr1g016080 Medicago truncatula HOM05D003275 ORTHO05D003732 7.6e-06 53.9 42 61.9
CiPaw.15G038500 Carya illinoinensis HOM05D003275 ORTHO05D003732 9.9e-06 53.5 41 68.3


User provided reference genes

Program Settings