Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.9e-184 649.0 325 100.0
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.3e-150 535.8 313 85.0
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 5.1e-150 534.6 313 85.3
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.7e-150 533.9 313 85.0
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.9e-149 532.7 313 85.3
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.4e-149 530.8 313 85.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.2e-137 492.7 320 75.9
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 8.5e-129 464.2 316 71.8
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 8.0e-127 457.6 316 70.6
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.3e-116 423.7 305 66.2
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.1e-115 418.7 305 65.2
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 7.7e-114 414.5 312 63.5
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.5e-112 409.5 305 65.2
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 4.7e-111 405.2 312 64.1
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.4e-110 403.7 312 62.2
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 6.8e-110 401.4 311 63.3
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.7e-108 396.7 320 58.8
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.8e-108 396.0 305 62.0
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 2.4e-107 392.9 312 59.0
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 5.4e-107 391.7 305 62.3
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 5.4e-107 391.7 313 62.0
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 9.2e-107 391.0 305 61.6
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.7e-106 389.4 312 58.3
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 4.5e-106 388.7 320 56.9
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 4.5e-106 388.7 312 58.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 5.9e-106 388.3 315 60.0
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.7e-106 387.9 312 59.0
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 2.3e-105 386.3 301 62.8
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 6.6e-105 384.8 303 57.8
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.5e-104 382.9 301 62.8
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.3e-104 382.5 303 57.4
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-103 380.6 315 60.6
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.6e-103 380.2 315 60.6
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.1e-103 379.8 304 62.5
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 2.8e-103 379.4 315 60.3
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 2.8e-103 379.4 315 60.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.4e-102 377.1 313 60.7
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.8e-102 376.7 310 61.9
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 3.0e-102 375.9 305 61.0
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 4.0e-102 375.6 312 57.4
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.0e-101 373.2 310 61.6
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.6e-101 372.9 303 57.4
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 5.7e-101 371.7 309 59.5
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.7e-101 371.7 312 59.0
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 7.5e-101 371.3 302 61.3
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 9.8e-101 370.9 307 57.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 9.8e-101 370.9 315 59.4
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.7e-100 370.2 310 57.4
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 8.3e-100 367.9 309 59.2
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.1e-99 367.5 309 59.2
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.1e-99 367.5 313 58.5
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.4e-99 367.1 302 57.6
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.2e-99 365.9 308 58.8
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.1e-99 365.5 309 58.6
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 4.1e-99 365.5 302 57.6
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 4.6e-98 362.1 300 58.0
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 7.8e-98 361.3 313 57.5
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 2.3e-97 359.8 302 57.3
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.1e-96 357.5 303 55.4
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 3.3e-96 355.9 307 54.4
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 7.3e-96 354.8 312 58.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 9.5e-96 354.4 320 56.6
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.1e-95 353.2 310 57.7
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.1e-95 353.2 310 57.7
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 4.7e-95 352.1 305 57.0
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 6.2e-95 351.7 308 54.5
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.3e-94 349.7 307 54.4
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 4.0e-94 349.0 320 55.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 2.6e-93 346.3 307 57.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 3.4e-93 345.9 309 58.3
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 4.4e-93 345.5 307 56.4
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 3.2e-91 339.3 314 54.5
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.6e-90 335.5 310 55.8
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.7e-89 333.6 315 54.0
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 3.3e-88 329.3 304 53.3
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.6e-87 327.0 309 55.3
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.6e-87 327.0 283 57.2
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.8e-87 326.2 319 53.3
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.7e-87 325.5 310 51.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 6.2e-87 325.1 319 53.6
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.3e-86 323.2 318 53.8
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 4.0e-86 322.4 306 56.9
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 8.9e-86 321.2 307 52.1
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-85 320.9 302 53.6
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.2e-85 320.9 308 53.2
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.2e-85 320.9 312 54.5
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.4e-85 319.3 309 53.4
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 5.8e-85 318.5 312 54.2
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 5.8e-85 318.5 312 54.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 7.5e-85 318.2 310 50.6
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 7.5e-85 318.2 309 57.3
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.7e-84 317.0 312 52.2
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.9e-84 315.5 310 55.8
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.9e-83 313.5 298 52.7
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 8.6e-81 304.7 259 58.3
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 3.3e-80 302.8 311 54.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.6e-79 300.4 306 51.3
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 2.8e-79 299.7 321 48.6
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 2.8e-79 299.7 307 49.2
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.1e-78 297.7 307 48.9
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 6.4e-76 288.5 323 46.4
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 6.4e-76 288.5 310 50.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.6e-74 283.9 305 47.9
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 4.6e-74 282.3 306 48.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.7e-73 280.4 305 49.5
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 5.1e-73 278.9 316 47.5
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 9.6e-72 274.6 317 48.3
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.1e-71 273.5 286 52.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.5e-69 267.3 277 49.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 5.8e-69 265.4 303 48.5
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.2e-68 263.5 283 48.1
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.7e-66 256.5 276 47.5
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.9e-65 252.7 206 59.7
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.6e-64 248.8 325 44.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 8.1e-63 245.0 266 47.7
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 9.9e-61 238.0 297 44.4
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.9e-60 235.7 301 43.9
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.6e-58 229.2 289 44.3
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.5e-56 223.4 277 40.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.8e-54 217.2 286 40.2
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.3e-52 211.1 283 41.7
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 4.2e-51 206.1 278 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 9.6e-48 194.9 294 37.1
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.9e-46 188.7 282 36.2
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.5e-45 187.6 174 54.0
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 3.2e-43 179.9 136 69.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 2.4e-38 163.7 195 43.1
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 3.4e-37 159.8 88 87.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.4e-37 159.8 88 87.5
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.3e-36 157.9 142 56.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.2e-34 151.4 289 32.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 6.7e-33 145.6 273 33.3
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.8e-28 129.8 246 32.1
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.5e-24 117.9 189 36.5
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.4e-22 111.3 261 29.9
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 9.1e-22 108.6 201 35.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.1e-18 97.4 164 34.1
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 4.0e-09 66.6 73 47.9
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.8e-07 60.5 110 36.4


User provided reference genes

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