Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397371 Rosa chinensis HOM05D000002 ORTHO05D006339 7.0e-47 190.3 96 100.0
RcHm_v2.0_Chr4g0397311 Rosa chinensis HOM05D000002 ORTHO05D006339 9.6e-12 73.6 95 50.5
Cc02_g28480 Coffea canephora HOM05D000002 ORTHO05D006339 1.6e-11 72.8 103 45.6
Rhsim07G0058700 Rhododendron simsii HOM05D000002 ORTHO05D006339 2.8e-11 72.0 103 45.6
vmacro13695 Vaccinium macrocarpon HOM05D000002 ORTHO05D006339 2.8e-11 72.0 103 45.6
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 3.6e-11 71.6 95 49.5
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 3.6e-11 71.6 95 49.5
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 4.7e-11 71.2 95 49.5
Prupe.1G063600 Prunus persica HOM05D000002 ORTHO05D006339 4.7e-11 71.2 95 49.5
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 6.2e-11 70.9 103 44.7
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 1.1e-10 70.1 95 47.4
Dinv42804 Davidia involucrata HOM05D000002 ORTHO05D006339 1.8e-10 69.3 103 43.7
Dinv43297 Davidia involucrata HOM05D000002 ORTHO05D006339 1.8e-10 69.3 103 43.7
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.8e-10 69.3 116 46.6
Lsat_1_v5_gn_1_27101 Lactuca sativa HOM05D000002 ORTHO05D006339 2.4e-10 68.9 95 47.4
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 4.0e-10 68.2 103 43.7
Lj6A285T32 Lonicera japonica HOM05D000002 ORTHO05D006339 4.0e-10 68.2 103 43.7
MD16G1237800 Malus domestica HOM05D000002 ORTHO05D006339 4.0e-10 68.2 92 48.9
MD13G1232300 Malus domestica HOM05D000002 ORTHO05D006339 5.2e-10 67.8 95 46.3
CSS0014851 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 6.8e-10 67.4 95 47.4
CSS0036040 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 6.8e-10 67.4 95 47.4
Nitab4.5_0000707g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 6.8e-10 67.4 93 47.3
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 6.8e-10 67.4 93 48.4
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 6.8e-10 67.4 93 48.4
PGSC0003DMG400006784 Solanum tuberosum HOM05D000002 ORTHO05D006339 6.8e-10 67.4 93 48.4
DCAR_015254 Daucus carota HOM05D000002 ORTHO05D006339 8.9e-10 67.0 103 40.8
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 8.9e-10 67.0 103 42.7
CAN.G219.70 Capsicum annuum HOM05D000002 ORTHO05D006339 1.2e-09 66.6 93 48.4
AUR62038500 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.5e-09 66.2 102 43.1
Nitab4.5_0004053g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 1.5e-09 66.2 95 46.3
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 1.5e-09 66.2 103 42.7
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 1.5e-09 66.2 103 42.7
Aqoxy6G00620 Aquilegia oxysepala HOM05D000002 ORTHO05D006339 2.0e-09 65.9 103 41.7
Oeu027399.3 Olea europaea HOM05D000002 ORTHO05D006339 2.0e-09 65.9 95 46.3
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 2.0e-09 65.9 95 46.3
AUR62014228 Chenopodium quinoa HOM05D000002 ORTHO05D006339 2.6e-09 65.5 102 43.1
Eucgr.C02168 Eucalyptus grandis HOM05D000002 ORTHO05D006339 2.6e-09 65.5 93 45.2
PSO782G0950 Papaver somniferum HOM05D000002 ORTHO05D006339 2.6e-09 65.5 95 45.3
AL6G48450 Arabidopsis lyrata HOM05D000002 ORTHO05D006339 3.4e-09 65.1 95 45.3
CARHR252600 Cardamine hirsuta HOM05D000002 ORTHO05D006339 3.4e-09 65.1 93 46.2
ClCG11G011400 Citrullus lanatus HOM05D000002 ORTHO05D006339 3.4e-09 65.1 93 46.2
MELO3C003929.2 Cucumis melo HOM05D000002 ORTHO05D006339 3.4e-09 65.1 93 46.2
CsaV3_2G009090 Cucumis sativus L. HOM05D000002 ORTHO05D006339 3.4e-09 65.1 93 46.2
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 3.4e-09 65.1 103 40.8
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 3.4e-09 65.1 95 46.3
Sp6g04020 Schrenkiella parvula HOM05D000002 ORTHO05D006339 3.4e-09 65.1 95 45.3
Sed0008706 Sechium edule HOM05D000002 ORTHO05D006339 3.4e-09 65.1 93 46.2
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 3.4e-09 65.1 95 45.3
Carub.0006s3286 Capsella rubella HOM05D000002 ORTHO05D006339 7.6e-09 63.9 95 44.2
Thhalv10028405m.g Eutrema salsugineum HOM05D000002 ORTHO05D006339 7.6e-09 63.9 95 44.2
MBI16_g00838_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 7.6e-09 63.9 93 45.2
VMungo0464G2179 Vigna mungo HOM05D000002 ORTHO05D006339 7.6e-09 63.9 93 47.3
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
BcaC09g51499 Brassica carinata HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
A03p30240 Brassica napus HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
C03p36490 Brassica napus HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
BolC3t15962H Brassica oleracea HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
BraA03t12208Z Brassica rapa HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
PSO063G6760 Papaver somniferum HOM05D000002 ORTHO05D006339 9.9e-09 63.5 95 44.2
Glyma.08G359600 Glycine max HOM05D000002 ORTHO05D006339 1.3e-08 63.2 93 46.2
COL.COLO4_34912 Corchorus olitorius HOM05D000002 ORTHO05D006339 1.7e-08 62.8 95 42.1
Phvul.004G178100 Phaseolus vulgaris HOM05D000002 ORTHO05D006339 1.7e-08 62.8 93 46.2
THA.LOC104815310 Tarenaya hassleriana HOM05D000002 ORTHO05D006339 1.7e-08 62.8 95 43.2
Thecc.09G200300 Theobroma cacao HOM05D000002 ORTHO05D006339 1.7e-08 62.8 93 45.2
AT4G04940 Arabidopsis thaliana HOM05D000002 ORTHO05D006339 2.2e-08 62.4 95 43.2
Haze_19096 Corylus avellana HOM05D000002 ORTHO05D006339 2.2e-08 62.4 96 44.8
Migut.N01789 Erythranthe guttata HOM05D000002 ORTHO05D006339 2.2e-08 62.4 92 44.6
Gohir.A08G016100 Gossypium hirsutum HOM05D000002 ORTHO05D006339 2.2e-08 62.4 93 45.2
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-08 62.0 98 44.9
Gohir.D08G026300 Gossypium hirsutum HOM05D000002 ORTHO05D006339 2.9e-08 62.0 93 45.2
Gorai.004G022700 Gossypium raimondii HOM05D000002 ORTHO05D006339 2.9e-08 62.0 93 45.2
TWI34G1979 Tripterygium wilfordii HOM05D000002 ORTHO05D006339 2.9e-08 62.0 95 44.2
Cpa.g.c29901 Carica papaya HOM05D000002 ORTHO05D006339 3.8e-08 61.6 93 44.1
CDE07G0379 Ceratophyllum demersum HOM05D000002 ORTHO05D006339 3.8e-08 61.6 103 39.8
QL11p008633 Quercus lobata HOM05D000002 ORTHO05D006339 3.8e-08 61.6 95 43.2
Atru.chr7.1011 Acer truncatum HOM05D000002 ORTHO05D006339 4.9e-08 61.2 93 44.1
Cfa020756 Carpinus fangiana HOM05D000002 ORTHO05D006339 4.9e-08 61.2 96 43.8
Glyma.01G001600 Glycine max HOM05D000002 ORTHO05D006339 6.4e-08 60.8 93 45.2
Manes.18G125600 Manihot esculenta HOM05D000002 ORTHO05D006339 6.4e-08 60.8 95 43.2
Potri.018G148066 Populus trichocarpa HOM05D000002 ORTHO05D006339 6.4e-08 60.8 95 43.2
Ca_25635_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 8.4e-08 60.5 93 45.2
PGR044G0614 Punica granatum HOM05D000002 ORTHO05D006339 8.4e-08 60.5 92 43.5
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 1.1e-07 60.1 93 41.9
Ciclev10007395m.g Citrus clementina HOM05D000002 ORTHO05D006339 1.1e-07 60.1 95 43.2
Lj2g0025887 Lotus japonicus HOM05D000002 ORTHO05D006339 1.1e-07 60.1 97 44.3
Duzib150G0743 Durio zibethinus HOM05D000002 ORTHO05D006339 1.4e-07 59.7 93 43.0
SGA_v2.0_scaffold7G03720 Striga asiatica HOM05D000002 ORTHO05D006339 1.4e-07 59.7 94 41.5
arahy.Tifrunner.gnm1.ann1.2JX1G7 Arachis hypogaea HOM05D000002 ORTHO05D006339 1.9e-07 59.3 93 45.2
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 1.9e-07 59.3 95 43.2
Medtr6g093060 Medicago truncatula HOM05D000002 ORTHO05D006339 1.9e-07 59.3 93 44.1
Sabra06G0059800 Salix brachista HOM05D000002 ORTHO05D006339 1.9e-07 59.3 93 44.1
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 2.4e-07 58.9 96 44.8
Potri.006G078900 Populus trichocarpa HOM05D000002 ORTHO05D006339 2.4e-07 58.9 93 44.1
Peaxi162Scf00694g00221 Petunia axillaris HOM05D000002 ORTHO05D006339 4.2e-07 58.2 95 45.3
SEGI_16871 Sequoiadendron giganteum HOM05D000002 ORTHO05D006339 4.2e-07 58.2 104 38.5
TPR.G21348 Trifolium pratense HOM05D000002 ORTHO05D006339 4.2e-07 58.2 93 41.9
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 5.4e-07 57.8 93 44.1
arahy.Tifrunner.gnm1.ann1.M3F3BS Arachis hypogaea HOM05D000002 ORTHO05D006339 7.1e-07 57.4 93 44.1
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 7.1e-07 57.4 93 39.8
Psat1g051320 Pisum sativum HOM05D000002 ORTHO05D006339 1.2e-06 56.6 93 44.1
SHI03137 Sapria himalayana HOM05D000002 ORTHO05D006339 6.0e-06 54.3 93 39.8
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 7.8e-06 53.9 92 41.3


User provided reference genes

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