Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397341 Rosa chinensis HOM05D000002 ORTHO05D006339 6.7e-66 253.8 125 100.0
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 1.4e-47 193.0 104 91.3
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.4e-47 193.0 104 91.3
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.4e-47 192.2 103 91.3
RcHm_v2.0_Chr4g0397311 Rosa chinensis HOM05D000002 ORTHO05D006339 2.4e-47 192.2 104 92.3
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 4.1e-47 191.4 103 91.3
MD13G1232300 Malus domestica HOM05D000002 ORTHO05D006339 4.1e-47 191.4 106 86.8
Prupe.1G063600 Prunus persica HOM05D000002 ORTHO05D006339 9.1e-47 190.3 106 86.8
MD16G1237800 Malus domestica HOM05D000002 ORTHO05D006339 4.5e-46 188.0 106 84.9
TAR369G0907 Trochodendron aralioides HOM05D000002 ORTHO05D006339 2.2e-45 185.7 113 77.9
Dinv42804 Davidia involucrata HOM05D000002 ORTHO05D006339 2.9e-45 185.3 103 83.5
Dinv43297 Davidia involucrata HOM05D000002 ORTHO05D006339 2.9e-45 185.3 103 83.5
PSO063G6760 Papaver somniferum HOM05D000002 ORTHO05D006339 1.9e-44 182.6 103 82.5
PSO782G0950 Papaver somniferum HOM05D000002 ORTHO05D006339 1.9e-44 182.6 103 82.5
Atru.chr7.1011 Acer truncatum HOM05D000002 ORTHO05D006339 3.2e-44 181.8 103 82.5
Hma1.2p1_0269F.1_g107850 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 3.2e-44 181.8 102 82.4
Hma1.2p1_0269F.1_g107870 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 3.2e-44 181.8 102 82.4
Aqoxy6G00620 Aquilegia oxysepala HOM05D000002 ORTHO05D006339 9.4e-44 180.3 105 80.0
Cfa020756 Carpinus fangiana HOM05D000002 ORTHO05D006339 9.4e-44 180.3 103 81.6
Cc02_g28480 Coffea canephora HOM05D000002 ORTHO05D006339 9.4e-44 180.3 103 80.6
Haze_19096 Corylus avellana HOM05D000002 ORTHO05D006339 9.4e-44 180.3 103 81.6
PGR044G0614 Punica granatum HOM05D000002 ORTHO05D006339 9.4e-44 180.3 103 80.6
Rhsim07G0058700 Rhododendron simsii HOM05D000002 ORTHO05D006339 1.2e-43 179.9 103 80.6
Sabra06G0059800 Salix brachista HOM05D000002 ORTHO05D006339 1.2e-43 179.9 103 80.6
vmacro13695 Vaccinium macrocarpon HOM05D000002 ORTHO05D006339 1.2e-43 179.9 103 80.6
MBI15_g00655_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 1.6e-43 179.5 102 83.3
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 1.6e-43 179.5 101 83.2
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 2.1e-43 179.1 103 78.6
Gorai.004G022700 Gossypium raimondii HOM05D000002 ORTHO05D006339 2.1e-43 179.1 103 78.6
Ciclev10007395m.g Citrus clementina HOM05D000002 ORTHO05D006339 2.7e-43 178.7 102 81.4
Gohir.A08G016100 Gossypium hirsutum HOM05D000002 ORTHO05D006339 2.7e-43 178.7 103 78.6
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 2.7e-43 178.7 103 78.6
Potri.006G078900 Populus trichocarpa HOM05D000002 ORTHO05D006339 2.7e-43 178.7 103 79.6
Lsat_1_v5_gn_1_27101 Lactuca sativa HOM05D000002 ORTHO05D006339 3.6e-43 178.3 103 78.6
CSS0014851 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 4.7e-43 177.9 103 80.6
CSS0036040 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 4.7e-43 177.9 103 80.6
Nitab4.5_0000707g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 4.7e-43 177.9 103 79.6
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 4.7e-43 177.9 103 79.6
PGSC0003DMG400006784 Solanum tuberosum HOM05D000002 ORTHO05D006339 4.7e-43 177.9 103 78.6
TWI34G1979 Tripterygium wilfordii HOM05D000002 ORTHO05D006339 4.7e-43 177.9 103 79.6
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 6.1e-43 177.6 100 81.0
Nitab4.5_0004053g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 6.1e-43 177.6 103 78.6
Thecc.09G200300 Theobroma cacao HOM05D000002 ORTHO05D006339 6.1e-43 177.6 103 77.7
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 8.0e-43 177.2 103 79.6
Duzib150G0743 Durio zibethinus HOM05D000002 ORTHO05D006339 8.0e-43 177.2 103 77.7
QL11p008633 Quercus lobata HOM05D000002 ORTHO05D006339 8.0e-43 177.2 103 81.6
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 1.0e-42 176.8 100 82.0
arahy.Tifrunner.gnm1.ann1.M3F3BS Arachis hypogaea HOM05D000002 ORTHO05D006339 1.0e-42 176.8 100 82.0
Gohir.D08G026300 Gossypium hirsutum HOM05D000002 ORTHO05D006339 1.0e-42 176.8 103 77.7
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 1.4e-42 176.4 103 77.7
AUR62014228 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.8e-42 176.0 103 78.6
AUR62038500 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.8e-42 176.0 103 78.6
Migut.N01789 Erythranthe guttata HOM05D000002 ORTHO05D006339 1.8e-42 176.0 100 80.0
Migut.O00915 Erythranthe guttata HOM05D000002 ORTHO05D006339 1.8e-42 176.0 100 80.0
Eucgr.C02168 Eucalyptus grandis HOM05D000002 ORTHO05D006339 1.8e-42 176.0 102 80.4
CAN.G219.70 Capsicum annuum HOM05D000002 ORTHO05D006339 2.3e-42 175.6 103 77.7
Peaxi162Scf00694g00221 Petunia axillaris HOM05D000002 ORTHO05D006339 2.3e-42 175.6 103 77.7
CDE07G0379 Ceratophyllum demersum HOM05D000002 ORTHO05D006339 3.0e-42 175.3 104 74.0
Lj6A285T31 Lonicera japonica HOM05D000002 ORTHO05D006339 3.0e-42 175.3 103 77.7
COL.COLO4_34912 Corchorus olitorius HOM05D000002 ORTHO05D006339 4.0e-42 174.9 104 76.9
MELO3C003929.2 Cucumis melo HOM05D000002 ORTHO05D006339 4.0e-42 174.9 104 78.8
Glyma.01G001600 Glycine max HOM05D000002 ORTHO05D006339 4.0e-42 174.9 100 81.0
Phvul.004G178100 Phaseolus vulgaris HOM05D000002 ORTHO05D006339 4.0e-42 174.9 100 82.0
TPR.G21348 Trifolium pratense HOM05D000002 ORTHO05D006339 4.0e-42 174.9 103 79.6
CsaV3_2G009090 Cucumis sativus L. HOM05D000002 ORTHO05D006339 5.2e-42 174.5 104 77.9
MBI16_g00838_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 5.2e-42 174.5 102 84.3
Glyma.08G359600 Glycine max HOM05D000002 ORTHO05D006339 6.8e-42 174.1 100 80.0
arahy.Tifrunner.gnm1.ann1.2JX1G7 Arachis hypogaea HOM05D000002 ORTHO05D006339 8.8e-42 173.7 100 81.0
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 8.8e-42 173.7 103 74.8
Medtr6g093060 Medicago truncatula HOM05D000002 ORTHO05D006339 8.8e-42 173.7 103 79.6
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 8.8e-42 173.7 103 75.7
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 8.8e-42 173.7 103 75.7
VMungo0464G2179 Vigna mungo HOM05D000002 ORTHO05D006339 8.8e-42 173.7 100 80.0
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 1.2e-41 173.3 103 77.7
Ca_25635_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 1.2e-41 173.3 103 78.6
Psat1g051320 Pisum sativum HOM05D000002 ORTHO05D006339 1.2e-41 173.3 103 78.6
SGA_v2.0_scaffold7G03720 Striga asiatica HOM05D000002 ORTHO05D006339 1.2e-41 173.3 106 75.5
A03p30240 Brassica napus HOM05D000002 ORTHO05D006339 1.5e-41 172.9 103 76.7
C03p36490 Brassica napus HOM05D000002 ORTHO05D006339 1.5e-41 172.9 103 76.7
BolC3t15962H Brassica oleracea HOM05D000002 ORTHO05D006339 1.5e-41 172.9 103 76.7
BraA03t12208Z Brassica rapa HOM05D000002 ORTHO05D006339 1.5e-41 172.9 103 76.7
DCAR_015254 Daucus carota HOM05D000002 ORTHO05D006339 1.5e-41 172.9 100 79.0
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 1.5e-41 172.9 100 81.0
ClCG11G011400 Citrullus lanatus HOM05D000002 ORTHO05D006339 2.0e-41 172.6 104 77.9
Manes.18G125600 Manihot esculenta HOM05D000002 ORTHO05D006339 2.0e-41 172.6 103 80.6
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 2.0e-41 172.6 103 76.7
arahy.Tifrunner.gnm1.ann1.TJ5BAV Arachis hypogaea HOM05D000002 ORTHO05D006339 2.6e-41 172.2 100 79.0
Sed0008706 Sechium edule HOM05D000002 ORTHO05D006339 2.6e-41 172.2 104 78.8
CARHR252600 Cardamine hirsuta HOM05D000002 ORTHO05D006339 5.7e-41 171.0 102 78.4
Oeu027399.3 Olea europaea HOM05D000002 ORTHO05D006339 7.5e-41 170.6 100 79.0
Sp6g04020 Schrenkiella parvula HOM05D000002 ORTHO05D006339 7.5e-41 170.6 103 75.7
AL6G48450 Arabidopsis lyrata HOM05D000002 ORTHO05D006339 9.8e-41 170.2 102 76.5
Thhalv10028405m.g Eutrema salsugineum HOM05D000002 ORTHO05D006339 1.3e-40 169.9 100 78.0
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 1.3e-40 169.9 100 78.0
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-40 169.5 102 74.5
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 2.2e-40 169.1 103 75.7
Carub.0006s3286 Capsella rubella HOM05D000002 ORTHO05D006339 2.8e-40 168.7 102 75.5
FAN17G1253 Fragaria x ananassa HOM05D000002 ORTHO05D006339 3.7e-40 168.3 89 93.3
THA.LOC104815310 Tarenaya hassleriana HOM05D000002 ORTHO05D006339 4.8e-40 167.9 103 71.8
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 1.1e-39 166.8 100 72.0
AT4G04940 Arabidopsis thaliana HOM05D000002 ORTHO05D006339 1.4e-39 166.4 102 72.5
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 3.1e-39 165.2 100 70.0
Lj2g0025887 Lotus japonicus HOM05D000002 ORTHO05D006339 9.1e-39 163.7 103 72.8
ATR0626G089 Amborella trichopoda HOM05D000002 ORTHO05D006339 1.6e-38 162.9 103 71.8
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 4.5e-38 161.4 94 78.7
Potri.018G148132 Populus trichocarpa HOM05D000002 ORTHO05D006339 1.0e-37 160.2 87 83.9
unitig_747.g21292 Utricularia gibba HOM05D000002 ORTHO05D006339 1.0e-37 160.2 101 73.3
SEGI_16871 Sequoiadendron giganteum HOM05D000002 ORTHO05D006339 1.9e-36 156.0 102 66.7
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 2.3e-34 149.1 92 72.8
AagrBONN_evm.TU.Sc2ySwM_340.348 Anthoceros agrestis HOM05D000002 ORTHO05D006339 1.5e-33 146.4 101 60.4
SMO361G0562 Selaginella moellendorffii HOM05D000002 ORTHO05D006339 2.3e-29 132.5 99 58.6
Pp3c7_4500 Physcomitrium patens HOM05D000002 ORTHO05D006339 2.9e-29 132.1 94 62.8
CBR_g5707 Chara braunii HOM05D000002 ORTHO05D006339 3.3e-28 128.6 102 52.9
BcaC09g51499 Brassica carinata HOM05D000002 ORTHO05D006339 1.8e-26 122.9 75 74.7
Mapoly0004s0293 Marchantia polymorpha HOM05D000002 ORTHO05D006339 6.4e-24 114.4 100 53.0
Cre10.g466250 Chlamydomonas reinhardtii HOM05D000002 ORTHO05D006339 3.3e-20 102.1 103 46.6
MCO04G295 Micromonas commoda HOM05D000002 ORTHO05D006339 7.0e-15 84.3 99 41.4
RcHm_v2.0_Chr4g0397411 Rosa chinensis HOM05D000002 ORTHO05D006339 6.2e-11 71.2 37 91.9


User provided reference genes

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