Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396731 Rosa chinensis HOM05D000181 ORTHO05D007950 3.0e-54 214.9 110 100.0
RcHm_v2.0_Chr3g0449311 Rosa chinensis HOM05D000181 ORTHO05D007950 5.6e-24 114.4 122 56.6
FvH4_6g01550 Fragaria vesca HOM05D000181 ORTHO05D007950 3.1e-22 108.6 122 54.1
FAN09G4093 Fragaria x ananassa HOM05D000181 ORTHO05D007950 3.1e-22 108.6 122 54.1
FAN14G0398 Fragaria x ananassa HOM05D000181 ORTHO05D007950 3.1e-22 108.6 122 54.1
FAN14G4262 Fragaria x ananassa HOM05D000181 ORTHO05D007950 3.1e-22 108.6 122 54.1
Prupe.6G352000 Prunus persica HOM05D000181 ORTHO05D007950 3.8e-20 101.7 122 50.0
MD04G1232400 Malus domestica HOM05D000181 ORTHO05D007950 6.4e-20 100.9 122 48.4
arahy.Tifrunner.gnm1.ann1.F17Y7U Arachis hypogaea HOM05D000181 ORTHO05D007950 1.1e-19 100.1 122 49.2
arahy.Tifrunner.gnm1.ann1.F7IFNT Arachis hypogaea HOM05D000181 ORTHO05D007950 1.1e-19 100.1 122 49.2
ClCG03G010040 Citrullus lanatus HOM05D000181 ORTHO05D007950 1.1e-19 100.1 122 50.8
CANSAT54G2074 Cannabis sativa HOM05D000181 ORTHO05D007950 1.4e-19 99.8 122 49.2
Sed0008679 Sechium edule HOM05D000181 ORTHO05D007950 1.4e-19 99.8 122 50.0
Cfa006380 Carpinus fangiana HOM05D000181 ORTHO05D007950 1.9e-19 99.4 122 50.0
Lj5g0022962 Lotus japonicus HOM05D000181 ORTHO05D007950 1.9e-19 99.4 122 49.2
Dinv11715 Davidia involucrata HOM05D000181 ORTHO05D007950 2.4e-19 99.0 122 48.4
Gohir.A11G245300 Gossypium hirsutum HOM05D000181 ORTHO05D007950 3.2e-19 98.6 122 50.0
Gohir.D11G255200 Gossypium hirsutum HOM05D000181 ORTHO05D007950 3.2e-19 98.6 122 50.0
Gorai.007G273800 Gossypium raimondii HOM05D000181 ORTHO05D007950 3.2e-19 98.6 122 50.0
TAR362G0160 Trochodendron aralioides HOM05D000181 ORTHO05D007950 3.2e-19 98.6 122 49.2
MELO3C010145.2 Cucumis melo HOM05D000181 ORTHO05D007950 4.1e-19 98.2 122 50.0
Glyma.20G227000 Glycine max HOM05D000181 ORTHO05D007950 1.2e-18 96.7 123 47.2
Nitab4.5_0002192g0060 Nicotiana tabacum HOM05D000181 ORTHO05D007950 1.2e-18 96.7 122 47.5
Sabra13G0044800 Salix brachista HOM05D000181 ORTHO05D007950 1.2e-18 96.7 122 48.4
CiPaw.07G071100 Carya illinoinensis HOM05D000181 ORTHO05D007950 1.6e-18 96.3 122 49.2
DCAR_030391 Daucus carota HOM05D000181 ORTHO05D007950 1.6e-18 96.3 122 46.7
Glyma.10G164800 Glycine max HOM05D000181 ORTHO05D007950 1.6e-18 96.3 122 47.5
Lalb_Chr06g0168211 Lupinus albus HOM05D000181 ORTHO05D007950 1.6e-18 96.3 122 47.5
Potri.013G048700 Populus trichocarpa HOM05D000181 ORTHO05D007950 2.7e-18 95.5 122 47.5
VMungo0720G1286 Vigna mungo HOM05D000181 ORTHO05D007950 2.7e-18 95.5 122 47.5
THA.LOC104827282 Tarenaya hassleriana HOM05D000181 ORTHO05D007950 3.5e-18 95.1 122 49.2
CDE12G0221 Ceratophyllum demersum HOM05D000181 ORTHO05D007950 4.6e-18 94.7 122 45.9
Sc16g0009800 Simmondsia chinensis HOM05D000181 ORTHO05D007950 4.6e-18 94.7 122 48.4
TWI34G0190 Tripterygium wilfordii HOM05D000181 ORTHO05D007950 4.6e-18 94.7 122 47.5
CSS0011745 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D007950 6.0e-18 94.4 122 46.7
Nn4g25637 Nelumbo nucifera HOM05D000181 ORTHO05D007950 6.0e-18 94.4 122 47.5
Thecc.05G267400 Theobroma cacao HOM05D000181 ORTHO05D007950 6.0e-18 94.4 122 48.4
CAN.G1284.1 Capsicum annuum HOM05D000181 ORTHO05D007950 7.8e-18 94.0 122 46.7
Eucgr.H04217 Eucalyptus grandis HOM05D000181 ORTHO05D007950 7.8e-18 94.0 122 45.9
Manes.08G141200 Manihot esculenta HOM05D000181 ORTHO05D007950 7.8e-18 94.0 122 47.5
Phvul.L002051 Phaseolus vulgaris HOM05D000181 ORTHO05D007950 7.8e-18 94.0 122 46.7
Medtr1g080430 Medicago truncatula HOM05D000181 ORTHO05D007950 1.3e-17 93.2 122 46.7
Atru.chr2.1070 Acer truncatum HOM05D000181 ORTHO05D007950 1.7e-17 92.8 122 47.5
CsaV3_1G045170 Cucumis sativus L. HOM05D000181 ORTHO05D007950 1.7e-17 92.8 122 47.5
Aa31LG5G14810 Aethionema arabicum HOM05D000181 ORTHO05D007950 2.3e-17 92.4 122 47.5
Ciclev10030569m.g Citrus clementina HOM05D000181 ORTHO05D007950 2.3e-17 92.4 122 46.7
MBI19_g37398_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D007950 2.3e-17 92.4 122 47.5
GSVIVG01021791001 Vitis vinifera HOM05D000181 ORTHO05D007950 2.3e-17 92.4 122 44.3
Ca_10026_v3 Cicer arietinum L. HOM05D000181 ORTHO05D007950 3.0e-17 92.0 122 46.7
Thhalv10022255m.g Eutrema salsugineum HOM05D000181 ORTHO05D007950 3.0e-17 92.0 123 47.2
BcaC05g29949 Brassica carinata HOM05D000181 ORTHO05D007950 3.9e-17 91.7 122 46.7
BcaC05g30203 Brassica carinata HOM05D000181 ORTHO05D007950 3.9e-17 91.7 122 46.7
A05p43110 Brassica napus HOM05D000181 ORTHO05D007950 3.9e-17 91.7 122 46.7
C05p62850 Brassica napus HOM05D000181 ORTHO05D007950 3.9e-17 91.7 122 46.7
BolC5t34940H Brassica oleracea HOM05D000181 ORTHO05D007950 3.9e-17 91.7 122 46.7
BraA05t23054Z Brassica rapa HOM05D000181 ORTHO05D007950 3.9e-17 91.7 122 46.7
PSO210G0470 Papaver somniferum HOM05D000181 ORTHO05D007950 3.9e-17 91.7 123 45.5
PSO761G0660 Papaver somniferum HOM05D000181 ORTHO05D007950 3.9e-17 91.7 123 45.5
Thhalv10019907m.g Eutrema salsugineum HOM05D000181 ORTHO05D007950 5.1e-17 91.3 122 46.7
PGR004G1120 Punica granatum HOM05D000181 ORTHO05D007950 5.1e-17 91.3 122 46.7
Sp3g03230 Schrenkiella parvula HOM05D000181 ORTHO05D007950 8.7e-17 90.5 122 45.9
Aqoxy2G02791 Aquilegia oxysepala HOM05D000181 ORTHO05D007950 1.9e-16 89.4 121 44.6
AUR62006983 Chenopodium quinoa HOM05D000181 ORTHO05D007950 1.9e-16 89.4 122 45.1
Lsat_1_v5_gn_3_35721 Lactuca sativa HOM05D000181 ORTHO05D007950 1.9e-16 89.4 122 45.1
Duzib177G0506 Durio zibethinus HOM05D000181 ORTHO05D007950 2.5e-16 89.0 122 45.9
Peaxi162Scf00363g00728 Petunia axillaris HOM05D000181 ORTHO05D007950 3.3e-16 88.6 55 76.4
AT3G04340 Arabidopsis thaliana HOM05D000181 ORTHO05D007950 4.3e-16 88.2 122 45.1
AUR62000630 Chenopodium quinoa HOM05D000181 ORTHO05D007950 4.3e-16 88.2 122 44.3
Nitab4.5_0000501g0090 Nicotiana tabacum HOM05D000181 ORTHO05D007950 4.3e-16 88.2 55 76.4
TPR.G26633 Trifolium pratense HOM05D000181 ORTHO05D007950 4.3e-16 88.2 122 45.1
CARHR078520 Cardamine hirsuta HOM05D000181 ORTHO05D007950 7.3e-16 87.4 122 45.9
SalBow6G6839 Salvia bowleyana HOM05D000181 ORTHO05D007950 7.3e-16 87.4 122 42.6
Sopen02g011360 Solanum pennellii HOM05D000181 ORTHO05D007950 7.3e-16 87.4 122 45.1
HanXRQChr15g0472161 Helianthus annuus HOM05D000181 ORTHO05D007950 1.2e-15 86.7 122 44.3
AL3G14330 Arabidopsis lyrata HOM05D000181 ORTHO05D007950 2.1e-15 85.9 122 44.3
ATR0064G121 Amborella trichopoda HOM05D000181 ORTHO05D007950 2.8e-15 85.5 122 43.4
ECA246G2912 Erigeron canadensis HOM05D000181 ORTHO05D007950 3.6e-15 85.1 122 44.3
Carub.0003s0355 Capsella rubella HOM05D000181 ORTHO05D007950 8.1e-15 84.0 122 44.3
Actinidia04309 Actinidia chinensis HOM05D000181 ORTHO05D007950 1.1e-14 83.6 123 41.5
MSTRG.2063 Avicennia marina HOM05D000181 ORTHO05D007950 1.1e-14 83.6 122 41.8
EL10Ac4g09755 Beta vulgaris HOM05D000181 ORTHO05D007950 2.4e-14 82.4 122 40.2
Psat6g144520 Pisum sativum HOM05D000181 ORTHO05D007950 3.1e-14 82.0 55 72.7
Migut.E00692 Erythranthe guttata HOM05D000181 ORTHO05D007950 5.2e-14 81.3 55 67.3
Lj6A720T61 Lonicera japonica HOM05D000181 ORTHO05D007950 9.0e-14 80.5 54 72.2
Solyc02g032970.4 Solanum lycopersicum HOM05D000181 ORTHO05D007950 2.6e-13 79.0 55 70.9
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 4.4e-13 78.2 55 67.3
FAN02G1064 Fragaria x ananassa HOM05D000181 ORTHO05D007950 1.1e-08 63.5 96 42.7
SGA_v2.0_scaffold8G04660 Striga asiatica HOM05D000181 ORTHO05D007950 1.1e-08 63.5 122 36.1


User provided reference genes

Program Settings