Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0395871 Rosa chinensis HOM05D000681 ORTHO05D344307 1.0e-90 336.7 165 100.0
ATR0680G411 Amborella trichopoda HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 4.2e-07 58.9 28 92.9
C09p17670 Brassica napus HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
BolC9t54661H Brassica oleracea HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
CSS0003751 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D007906 4.2e-07 58.9 29 82.8
COL.COLO4_10754 Corchorus olitorius HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
FvH4_5g11480 Fragaria vesca HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
FAN04G2935 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
FAN08G3564 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
FAN13G0722 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
FAN18G3277 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
FAN18G3879 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
Manes.02G005700 Manihot esculenta HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
PGR042G3327 Punica granatum HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
QL02p029270 Quercus lobata HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
RcHm_v2.0_Chr7g0186321 Rosa chinensis HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
TAR629G1351 Trochodendron aralioides HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
unitig_748.g8249 Utricularia gibba HOM05D001832 ORTHO05D007906 4.2e-07 58.9 28 92.9
GSVIVG01019609001 Vitis vinifera HOM05D000681 ORTHO05D007906 4.2e-07 58.9 28 92.9
Ca_16302_v3 Cicer arietinum L. HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
Lj2A160G61 Lonicera japonica HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
Nitab4.5_0002439g0090 Nicotiana tabacum HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
PSO135G0585 Papaver somniferum HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
PSO384G3259 Papaver somniferum HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
Rhsim02G0248800 Rhododendron simsii HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
THA.LOC104823617 Tarenaya hassleriana HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
vmacro11525 Vaccinium macrocarpon HOM05D000681 ORTHO05D007906 5.5e-07 58.5 28 89.3
Atru.chr9.1961 Acer truncatum HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Actinidia22187 Actinidia chinensis HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
arahy.Tifrunner.gnm1.ann1.3Z5EIP Arachis hypogaea HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
arahy.Tifrunner.gnm1.ann1.7SWW0C Arachis hypogaea HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
arahy.Tifrunner.gnm1.ann1.NV1IU0 Arachis hypogaea HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Cpa.g.sc1802.2 Carica papaya HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
ClCG01G001830 Citrullus lanatus HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Ciclev10033898m.g Citrus clementina HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
MELO3C005755.2 Cucumis melo HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
CsaV3_5G001980 Cucumis sativus L. HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Glyma.13G002500 Glycine max HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Glyma.20G066600 Glycine max HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Lj6g0006526 Lotus japonicus HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Nn3g18935 Nelumbo nucifera HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Potri.001G087300 Populus trichocarpa HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Prupe.5G126100 Prunus persica HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Sabra01G0063600 Salix brachista HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Sed0022208 Sechium edule HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
SEGI_25059 Sequoiadendron giganteum HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
TWI60G0289 Tripterygium wilfordii HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
VMungo0540G0066 Vigna mungo HOM05D000681 ORTHO05D007906 7.1e-07 58.2 28 89.3
Aqoxy7G00050 Aquilegia oxysepala HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
AL2G10220 Arabidopsis lyrata HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
AT1G64550 Arabidopsis thaliana HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
A09p14590 Brassica napus HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
BraA09t37107Z Brassica rapa HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Carub.0002s0020 Capsella rubella HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
CARHR046390 Cardamine hirsuta HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
CDE06G2334 Ceratophyllum demersum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
DCAR_029862 Daucus carota HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 85.7
ECA233G2785 Erigeron canadensis HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 85.7
Eucgr.E01026 Eucalyptus grandis HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Thhalv10023304m.g Eutrema salsugineum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Gohir.A08G111500 Gossypium hirsutum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Gohir.D08G124500 Gossypium hirsutum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Gorai.004G131200 Gossypium raimondii HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Nitab4.5_0002367g0160 Nicotiana tabacum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 85.7
Sp2g00200 Schrenkiella parvula HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 89.3
Solyc08g082850.3 Solanum lycopersicum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 85.7
Sopen08g031080 Solanum pennellii HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 85.7
PGSC0003DMG400012253 Solanum tuberosum HOM05D000681 ORTHO05D007906 9.3e-07 57.8 28 85.7
CSS0011347 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D007906 1.2e-06 57.4 28 85.7
CAN.G567.63 Capsicum annuum HOM05D000681 ORTHO05D007906 1.2e-06 57.4 28 85.7
Pp3c3_23080 Physcomitrium patens HOM05D000681 ORTHO05D007906 1.2e-06 57.4 28 85.7
MSTRG.24855 Avicennia marina HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 89.3
EL10Ac5g12474 Beta vulgaris HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 89.3
BcaB07g31474 Brassica carinata HOM05D000681 ORTHO05D007906 1.6e-06 57.0 113 41.6
Mapoly0102s0020 Marchantia polymorpha HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 85.7
Os02g0826500 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 89.3
Psat5g108480 Pisum sativum HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 85.7
SGA_v2.0_scaffold36G14288 Striga asiatica HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 89.3
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 85.7
HPP92_025719 Vanilla planifolia HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 89.3
Zm00001eb259290 Zea mays HOM05D000681 ORTHO05D007906 1.6e-06 57.0 28 89.3
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 2.1e-06 56.6 28 85.7
CANSAT21G2350 Cannabis sativa HOM05D000681 ORTHO05D007906 2.1e-06 56.6 28 82.1
Dinv02365 Davidia involucrata HOM05D000681 ORTHO05D007906 2.1e-06 56.6 113 40.7
HanXRQChr07g0189311 Helianthus annuus HOM05D000681 ORTHO05D007906 2.1e-06 56.6 28 82.1
Lsat_1_v5_gn_6_8920 Lactuca sativa HOM05D000681 ORTHO05D007906 2.1e-06 56.6 28 82.1
MD06G1113200 Malus domestica HOM05D000681 ORTHO05D007906 2.1e-06 56.6 28 85.7
MD14G1134300 Malus domestica HOM05D000681 ORTHO05D007906 2.1e-06 56.6 28 85.7
CiPaw.11G115800 Carya illinoinensis HOM05D000681 ORTHO05D007906 2.7e-06 56.2 28 85.7
Peaxi162Scf00074g00436 Petunia axillaris HOM05D000681 ORTHO05D007906 2.7e-06 56.2 28 82.1
Cfa011960 Carpinus fangiana HOM05D000681 ORTHO05D007906 3.5e-06 55.8 28 85.7
Cc08_g16470 Coffea canephora HOM05D000681 ORTHO05D007906 3.5e-06 55.8 28 89.3
Haze_09121 Corylus avellana HOM05D000681 ORTHO05D007906 3.5e-06 55.8 28 85.7
Duzib205G1886 Durio zibethinus HOM05D000681 ORTHO05D007906 3.5e-06 55.8 28 85.7
Phvul.006G000500 Phaseolus vulgaris HOM05D000681 ORTHO05D007906 3.5e-06 55.8 28 89.3
Hund11369 Selenicereus undatus HOM05D000681 ORTHO05D007906 3.5e-06 55.8 28 85.7
Ciclev10019068m.g Citrus clementina HOM05D000681 ORTHO05D007906 4.6e-06 55.5 113 39.8
Migut.C00616 Erythranthe guttata HOM05D000681 ORTHO05D007906 4.6e-06 55.5 28 85.7
SalBow6G2752 Salvia bowleyana HOM05D000681 ORTHO05D007906 6.0e-06 55.1 120 36.7
SMO174G0206 Selaginella moellendorffii HOM05D000681 ORTHO05D007906 6.0e-06 55.1 28 78.6
Aa31LG2G1560 Aethionema arabicum HOM05D000681 ORTHO05D007906 7.9e-06 54.7 28 85.7
AUR62019886 Chenopodium quinoa HOM05D000681 ORTHO05D007906 7.9e-06 54.7 28 85.7
Lalb_Chr14g0362721 Lupinus albus HOM05D000681 ORTHO05D007906 7.9e-06 54.7 103 36.9
Medtr3g080970 Medicago truncatula HOM05D000681 ORTHO05D007906 7.9e-06 54.7 113 38.9


User provided reference genes

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