Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 1.6e-106 389.4 199 100.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.8e-98 362.1 199 90.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-97 359.8 199 90.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.6e-93 344.7 189 91.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-72 275.8 196 67.3
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 4.5e-72 275.0 198 68.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.7e-71 273.1 199 67.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 2.9e-71 272.3 196 66.8
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.6e-69 265.4 196 66.8
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.3e-66 256.9 197 61.9
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.6e-66 256.5 198 65.2
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 4.8e-66 255.0 196 61.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.8e-65 253.1 190 63.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 4.1e-65 251.9 199 62.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 5.3e-65 251.5 192 64.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.5e-64 250.0 192 62.5
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.5e-64 248.4 192 64.6
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.0e-63 247.3 196 60.7
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.8e-63 245.4 197 61.9
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 6.5e-63 244.6 195 60.5
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 8.5e-63 244.2 195 61.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 8.5e-63 244.2 193 60.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.1e-62 243.8 199 59.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 3.2e-62 242.3 200 59.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.2e-62 241.1 194 58.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 2.1e-61 239.6 188 60.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.1e-61 239.6 195 59.0
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.6e-61 238.8 199 59.8
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 3.6e-61 238.8 198 58.6
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.1e-61 238.0 199 59.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.9e-61 237.7 193 60.6
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.4e-60 236.9 193 59.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.8e-60 236.5 199 57.3
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.8e-60 236.5 194 57.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.8e-60 236.5 197 58.4
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-60 236.5 182 63.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 3.0e-60 235.7 195 60.0
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.9e-60 235.3 200 60.5
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 3.9e-60 235.3 199 57.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.7e-60 234.6 194 57.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 6.7e-60 234.6 202 57.9
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 6.7e-60 234.6 195 61.0
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 6.7e-60 234.6 194 59.3
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.7e-60 234.6 194 59.8
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.8e-60 234.2 195 60.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-59 233.8 134 86.6
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.5e-59 233.4 192 57.3
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 7.4e-59 231.1 193 60.6
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.4e-59 231.1 191 56.5
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.7e-58 229.9 195 57.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.2e-58 229.6 185 59.5
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.7e-58 228.8 187 57.2
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.8e-58 228.4 197 55.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 6.3e-58 228.0 194 57.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.8e-57 226.5 244 49.2
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.3e-57 224.9 193 57.5
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 5.3e-57 224.9 197 58.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.3e-57 224.9 199 56.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.1e-57 224.2 199 57.3
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-56 223.8 197 55.8
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.5e-56 223.4 197 57.4
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-56 223.0 188 56.9
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.6e-56 222.6 194 54.1
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 3.4e-56 222.2 199 54.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 4.5e-56 221.9 199 54.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 5.9e-56 221.5 195 56.9
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 7.7e-56 221.1 199 54.8
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.0e-55 220.7 197 53.8
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.3e-55 220.3 194 55.7
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 197 54.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.3e-55 220.3 198 56.1
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.2e-55 219.5 195 53.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 3.8e-55 218.8 199 54.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.0e-55 218.4 195 55.9
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 6.5e-55 218.0 199 54.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.5e-55 218.0 197 55.3
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-54 217.2 199 53.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.4e-54 216.9 199 54.8
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-54 216.9 188 55.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.9e-54 216.5 196 53.1
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.5e-54 216.1 195 52.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.2e-54 215.3 201 54.7
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.5e-54 214.9 196 52.6
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.5e-54 214.9 197 53.3
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 5.5e-54 214.9 197 54.3
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 5.5e-54 214.9 197 54.3
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 9.4e-54 214.2 199 51.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.4e-54 214.2 188 54.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 197 55.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.6e-53 213.4 196 54.6
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 52.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.1e-53 213.0 195 53.3
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 3.6e-53 212.2 195 52.8
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.4e-52 210.3 197 53.8
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.4e-52 210.3 199 53.8
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.8e-52 209.9 194 55.2
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.0e-52 209.1 199 51.3
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 6.7e-52 208.0 196 54.1
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 8.8e-52 207.6 197 52.8
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.4e-51 204.5 195 52.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 9.7e-51 204.1 196 51.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 9.7e-51 204.1 197 51.8
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-50 203.4 197 51.8
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.8e-50 202.6 195 50.3
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 3.7e-50 202.2 194 53.6
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 6.3e-50 201.4 190 50.0
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 6.3e-50 201.4 197 51.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.2e-50 201.1 197 51.3
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 187 54.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 197 50.3
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.4e-49 199.5 190 49.5
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.3e-49 198.4 190 50.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 7.0e-49 198.0 197 50.8
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 7.0e-49 198.0 200 51.0
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 3.5e-48 195.7 196 51.5
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 4.5e-48 195.3 146 61.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.0e-47 194.1 193 47.2
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.3e-47 193.7 179 52.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.2e-47 193.0 193 46.6
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.2e-47 193.0 194 53.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-47 193.0 197 48.2
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-47 193.0 197 50.3
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.2e-47 193.0 174 54.6
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.2e-47 193.0 193 47.2
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.9e-47 192.6 193 47.2
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.8e-47 192.2 190 49.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.0e-47 191.8 193 46.6
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.1e-46 190.7 190 47.9
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.1e-46 190.7 175 56.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.5e-46 190.3 199 48.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 195 48.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.9e-46 189.9 142 63.4
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.2e-46 188.7 190 47.4
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 2.1e-45 186.4 144 59.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.7e-45 185.3 191 48.2
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.2e-44 181.8 197 49.2
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 8.8e-44 181.0 165 56.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.5e-43 180.3 196 48.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.2e-42 176.4 179 49.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.2e-42 176.4 194 47.4
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 4.1e-41 172.2 190 44.7
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.6e-40 170.2 193 43.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.6e-40 170.2 166 50.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.5e-40 169.1 164 53.0
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-39 167.2 189 43.4
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.9e-39 166.0 198 44.4
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.9e-38 163.3 198 43.9
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.5e-38 162.9 192 44.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 7.2e-38 161.4 188 46.8
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-37 160.6 128 57.0
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.0e-36 157.5 162 50.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.4e-36 157.1 192 44.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 5.2e-36 155.2 197 43.7
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 8.8e-36 154.5 197 43.7
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.8e-35 151.0 147 51.0
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.2e-34 149.8 145 47.6
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.3e-34 148.3 154 48.7
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.8e-33 146.7 199 42.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.1e-33 145.6 114 61.4
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.0e-33 144.8 153 50.3
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 9.1e-33 144.4 199 40.7
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 7.7e-32 141.4 126 54.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.5e-30 137.1 199 38.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.0e-23 114.4 112 57.1
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.0e-21 104.8 188 35.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.9e-20 101.3 197 35.0
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.4e-19 99.4 105 50.5
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 8.3e-18 94.7 207 32.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.6e-16 90.5 83 54.2
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.3e-15 86.7 198 32.3
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.1e-14 84.3 200 30.5
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-14 84.0 166 32.5
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.5e-14 83.2 186 32.8
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-11 74.3 78 44.9
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 3.7e-10 69.3 176 29.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.4e-09 67.4 150 28.0
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.6e-07 58.2 91 41.8
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.5e-06 57.4 81 44.4


User provided reference genes

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