Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0393251 Rosa chinensis HOM05D001137 ORTHO05D015495 2.0e-22 108.2 55 100.0
RcHm_v2.0_Chr5g0019041 Rosa chinensis HOM05D001137 ORTHO05D015495 9.3e-20 99.4 54 94.4
Prupe.6G322800 Prunus persica HOM05D001137 ORTHO05D001967 1.8e-18 95.1 54 88.9
FAN09G3209 Fragaria x ananassa HOM05D001137 ORTHO05D001967 6.7e-18 93.2 50 94.0
MD12G1216500 Malus domestica HOM05D001137 ORTHO05D001967 6.7e-18 93.2 54 87.0
RcHm_v2.0_Chr3g0455341 Rosa chinensis HOM05D001137 ORTHO05D001967 6.7e-18 93.2 50 94.0
FAN05G3662 Fragaria x ananassa HOM05D001137 ORTHO05D001967 1.5e-17 92.0 50 92.0
MD04G1202500 Malus domestica HOM05D001137 ORTHO05D001967 1.5e-17 92.0 54 85.2
RcHm_v2.0_Chr4g0397481 Rosa chinensis HOM05D001137 ORTHO05D015495 1.5e-17 92.0 55 87.3
FAN02G2722 Fragaria x ananassa HOM05D001137 ORTHO05D001967 3.7e-16 87.4 50 88.0
ClCG02G015540 Citrullus lanatus HOM05D001137 ORTHO05D001967 4.0e-15 84.0 53 75.5
MELO3C004231.2 Cucumis melo HOM05D001137 ORTHO05D001967 9.0e-15 82.8 53 73.6
CsaV3_2G006540 Cucumis sativus L. HOM05D001137 ORTHO05D001967 9.0e-15 82.8 53 73.6
MELO3C000358.2 Cucumis melo HOM05D001137 ORTHO05D015495 2.0e-14 81.6 53 71.7
MELO3C019218.2 Cucumis melo HOM05D001137 ORTHO05D015495 5.8e-14 80.1 53 71.7
CANSAT54G2339 Cannabis sativa HOM05D001137 ORTHO05D001967 1.0e-13 79.3 50 76.0
Ciclev10000504m.g Citrus clementina HOM05D001137 ORTHO05D001967 1.0e-13 79.3 54 70.4
MELO3C032927.2 Cucumis melo HOM05D001137 ORTHO05D015495 1.0e-13 79.3 50 74.0
Sed0022056 Sechium edule HOM05D001137 ORTHO05D001967 1.3e-13 79.0 53 67.9
Dinv40308 Davidia involucrata HOM05D001137 ORTHO05D001967 1.7e-13 78.6 54 72.2
GSVIVG01031116001 Vitis vinifera HOM05D001137 ORTHO05D001967 1.7e-13 78.6 54 70.4
Sed0004131 Sechium edule HOM05D001137 ORTHO05D001967 2.2e-13 78.2 53 69.8
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 8.4e-13 76.3 50 74.0
MELO3C031209.2 Cucumis melo HOM05D001137 ORTHO05D015495 1.9e-12 75.1 53 67.9
Dinv30786 Davidia involucrata HOM05D001137 ORTHO05D001967 2.5e-12 74.7 54 66.7
Solyc01g099350.3 Solanum lycopersicum HOM05D001137 ORTHO05D001967 3.2e-12 74.3 54 66.7
Sopen01g042910 Solanum pennellii HOM05D001137 ORTHO05D001967 3.2e-12 74.3 54 66.7
PGSC0003DMG400024701 Solanum tuberosum HOM05D001137 ORTHO05D001967 3.2e-12 74.3 54 66.7
vmacro04982 Vaccinium macrocarpon HOM05D001137 ORTHO05D001967 4.2e-12 73.9 50 70.0
CiPaw.07G020200 Carya illinoinensis HOM05D001137 ORTHO05D001967 5.5e-12 73.6 54 66.7
HanXRQChr11g0339451 Helianthus annuus HOM05D001137 ORTHO05D001967 7.1e-12 73.2 54 64.8
Lsat_1_v5_gn_9_87501 Lactuca sativa HOM05D001137 ORTHO05D001967 7.1e-12 73.2 54 64.8
MELO3C024609.2 Cucumis melo HOM05D001137 ORTHO05D015495 9.3e-12 72.8 54 63.0
Nitab4.5_0002344g0120 Nicotiana tabacum HOM05D001137 ORTHO05D001967 9.3e-12 72.8 53 64.2
QL03p012727 Quercus lobata HOM05D001137 ORTHO05D001967 9.3e-12 72.8 54 64.8
Haze_04162 Corylus avellana HOM05D001137 ORTHO05D001967 1.2e-11 72.4 54 64.8
Thecc.05G311100 Theobroma cacao HOM05D001137 ORTHO05D001967 1.2e-11 72.4 50 68.0
Manes.09G169100 Manihot esculenta HOM05D001137 ORTHO05D001967 1.6e-11 72.0 54 66.7
Peaxi162Scf00037g00923 Petunia axillaris HOM05D001137 ORTHO05D001967 1.6e-11 72.0 54 63.0
COL.COLO4_10493 Corchorus olitorius HOM05D001137 ORTHO05D001967 2.1e-11 71.6 50 70.0
Actinidia23650 Actinidia chinensis HOM05D001137 ORTHO05D001967 2.7e-11 71.2 54 68.5
Nitab4.5_0004754g0030 Nicotiana tabacum HOM05D001137 ORTHO05D001967 2.7e-11 71.2 50 66.0
CAN.G1034.50 Capsicum annuum HOM05D001137 ORTHO05D001967 3.5e-11 70.9 54 63.0
Cfa006613 Carpinus fangiana HOM05D001137 ORTHO05D001967 3.5e-11 70.9 54 63.0
Rhsim07G0183300 Rhododendron simsii HOM05D001137 ORTHO05D001967 3.5e-11 70.9 50 68.0
Actinidia05688 Actinidia chinensis HOM05D001137 ORTHO05D001967 4.6e-11 70.5 54 68.5
Duzib106G0557 Durio zibethinus HOM05D001137 ORTHO05D001967 4.6e-11 70.5 50 68.0
TWI56G1154 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 6.1e-11 70.1 50 68.0
Nn5g30054 Nelumbo nucifera HOM05D001137 ORTHO05D001967 7.9e-11 69.7 54 68.5
Oeu012110.2 Olea europaea HOM05D001137 ORTHO05D001967 7.9e-11 69.7 53 62.3
Oeu020840.1 Olea europaea HOM05D001137 ORTHO05D001967 7.9e-11 69.7 50 64.0
TAR633G1242 Trochodendron aralioides HOM05D001137 ORTHO05D001967 7.9e-11 69.7 54 66.7
Duzib128G1578 Durio zibethinus HOM05D001137 ORTHO05D001967 1.0e-10 69.3 50 64.0
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.0e-10 69.3 50 64.0
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.0e-10 69.3 50 64.0
CSS0025432 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 1.3e-10 68.9 49 67.3
Gohir.A13G108500 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.3e-10 68.9 50 64.0
Gorai.013G125100 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.3e-10 68.9 50 64.0
Migut.N01989 Erythranthe guttata HOM05D001137 ORTHO05D001967 1.8e-10 68.6 53 60.4
Manes.08G119300 Manihot esculenta HOM05D001137 ORTHO05D001967 1.8e-10 68.6 54 64.8
BcaC05g30123 Brassica carinata HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 64.8
BcaC05g30125 Brassica carinata HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 64.8
C05p61810 Brassica napus HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 64.8
BolC5t34841H Brassica oleracea HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 64.8
BraA05t23031Z Brassica rapa HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 64.8
Ca_10122_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 63.0
Gohir.A11G266400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.0e-10 67.8 50 64.0
Gohir.D11G276700 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.0e-10 67.8 50 64.0
Gorai.007G298800 Gossypium raimondii HOM05D001137 ORTHO05D001967 3.0e-10 67.8 50 64.0
Hma1.2p1_1334F.1_g276250 Hydrangea macrophylla HOM05D001137 ORTHO05D001967 3.0e-10 67.8 54 66.7
Lj5g0027868 Lotus japonicus HOM05D001137 ORTHO05D001967 3.0e-10 67.8 53 66.0
Hund07086 Selenicereus undatus HOM05D001137 ORTHO05D015495 3.0e-10 67.8 55 63.6
ECA236G0157 Erigeron canadensis HOM05D000001 ORTHO05D001967 3.9e-10 67.4 53 64.2
Migut.N01976 Erythranthe guttata HOM05D001137 ORTHO05D001967 3.9e-10 67.4 49 63.3
Eucgr.B01931 Eucalyptus grandis HOM05D001137 ORTHO05D001967 3.9e-10 67.4 55 61.8
Potri.005G026900 Populus trichocarpa HOM05D001137 ORTHO05D001967 3.9e-10 67.4 54 63.0
Sabra05G0032200 Salix brachista HOM05D001137 ORTHO05D001967 3.9e-10 67.4 54 64.8
Hund07088 Selenicereus undatus HOM05D001137 ORTHO05D001967 3.9e-10 67.4 57 61.4
TPR.G33177 Trifolium pratense HOM05D001137 ORTHO05D001967 5.1e-10 67.0 54 63.0
Atru.chr2.15 Acer truncatum HOM05D001137 ORTHO05D001967 6.7e-10 66.6 54 64.8
arahy.Tifrunner.gnm1.ann1.6BI416 Arachis hypogaea HOM05D001137 ORTHO05D001967 6.7e-10 66.6 54 64.8
unitig_746.g26860 Utricularia gibba HOM05D001137 ORTHO05D001967 6.7e-10 66.6 50 62.0
EL10Ac4g09377 Beta vulgaris HOM05D001137 ORTHO05D001967 8.7e-10 66.2 51 68.6
BcaC05g30147 Brassica carinata HOM05D001137 ORTHO05D015495 8.7e-10 66.2 54 63.0
Duzib177G0730 Durio zibethinus HOM05D001137 ORTHO05D001967 8.7e-10 66.2 50 64.0
Gohir.D13G111400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.1e-09 65.9 50 62.0
SGA_v2.0_scaffold80G25790 Striga asiatica HOM05D001137 ORTHO05D001967 1.1e-09 65.9 53 58.5
Aqoxy5G00704 Aquilegia oxysepala HOM05D001137 ORTHO05D001967 1.5e-09 65.5 54 61.1
Potri.013G018800 Populus trichocarpa HOM05D001137 ORTHO05D001967 1.5e-09 65.5 54 63.0
THA.LOC104802801 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 1.5e-09 65.5 54 63.0
arahy.Tifrunner.gnm1.ann1.H0NCP1 Arachis hypogaea HOM05D001137 ORTHO05D001967 1.9e-09 65.1 54 63.0
BcaC09g47824 Brassica carinata HOM05D001137 ORTHO05D001967 1.9e-09 65.1 54 63.0
BraSC132t45504Z Brassica rapa HOM05D001137 ORTHO05D001967 1.9e-09 65.1 54 63.0
Ca_05808_v3 Cicer arietinum L. HOM05D001137 ORTHO05D001967 1.9e-09 65.1 54 61.1
Glyma.03G236500 Glycine max HOM05D001137 ORTHO05D001967 1.9e-09 65.1 54 61.1
VMungo0540G2300 Vigna mungo HOM05D001137 ORTHO05D001967 1.9e-09 65.1 54 61.1
BraA03t12585Z Brassica rapa HOM05D001137 ORTHO05D001967 2.5e-09 64.7 54 63.0
Lalb_Chr02g0148181 Lupinus albus HOM05D001137 ORTHO05D001967 2.5e-09 64.7 54 59.3
Medtr7g113200 Medicago truncatula HOM05D001137 ORTHO05D001967 2.5e-09 64.7 54 61.1
Psat0s3231g0040 Pisum sativum HOM05D001137 ORTHO05D001967 2.5e-09 64.7 54 61.1
Sabra13G0021400 Salix brachista HOM05D001137 ORTHO05D001967 2.5e-09 64.7 54 61.1
Sc09g0003040 Simmondsia chinensis HOM05D001137 ORTHO05D001967 2.5e-09 64.7 53 58.5
BcaB04g19268 Brassica carinata HOM05D001137 ORTHO05D001967 3.3e-09 64.3 54 63.0
BcaB04g19269 Brassica carinata HOM05D001643 ORTHO05D001580 3.3e-09 64.3 54 63.0
BNapus_Darmor_BZH_scaffold_114p00080 Brassica napus HOM05D001137 ORTHO05D001967 3.3e-09 64.3 54 63.0
C03p41510 Brassica napus HOM05D001137 ORTHO05D001967 3.3e-09 64.3 54 63.0
BolC3t16432H Brassica oleracea HOM05D001137 ORTHO05D001967 3.3e-09 64.3 54 63.0
CARHR079760 Cardamine hirsuta HOM05D001137 ORTHO05D001967 3.3e-09 64.3 54 63.0
AUR62000789 Chenopodium quinoa HOM05D001137 ORTHO05D001967 3.3e-09 64.3 51 66.7
AUR62005178 Chenopodium quinoa HOM05D001137 ORTHO05D001967 3.3e-09 64.3 51 66.7
Thhalv10020218m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 3.3e-09 64.3 54 63.0
MSTRG.27988 Avicennia marina HOM05D001137 ORTHO05D001967 5.7e-09 63.5 53 54.7
CSS0049898 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D001967 5.7e-09 63.5 54 63.0
Phvul.006G090700 Phaseolus vulgaris HOM05D001137 ORTHO05D001967 5.7e-09 63.5 54 59.3
THA.LOC104821718 Tarenaya hassleriana HOM05D001137 ORTHO05D001967 5.7e-09 63.5 54 63.0
BcaB04g19270 Brassica carinata HOM05D001643 ORTHO05D001580 7.4e-09 63.2 54 61.1
Glyma.19G234400 Glycine max HOM05D001137 ORTHO05D001967 7.4e-09 63.2 50 64.0
Glyma.20G235500 Glycine max HOM05D001137 ORTHO05D001967 7.4e-09 63.2 50 62.0
ATR0706G044 Amborella trichopoda HOM05D001137 ORTHO05D001967 1.3e-08 62.4 54 63.0
Gohir.D11G309900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.3e-08 62.4 50 60.0
Gorai.007G342000 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.3e-08 62.4 50 60.0
Lalb_Chr04g0260691 Lupinus albus HOM05D001137 ORTHO05D001967 1.3e-08 62.4 50 62.0
Gohir.A11G295100 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.6e-08 62.0 50 60.0
HanXRQChr14g0433311 Helianthus annuus HOM05D001137 ORTHO05D001967 1.6e-08 62.0 54 61.1
PGR031G2322 Punica granatum HOM05D001137 ORTHO05D001967 1.6e-08 62.0 50 64.0
AT3G05420 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 2.2e-08 61.6 54 61.1
A03p34120 Brassica napus HOM05D001137 ORTHO05D001967 2.2e-08 61.6 54 63.0
BolC1t05695H Brassica oleracea HOM05D001137 ORTHO05D001967 2.2e-08 61.6 54 61.1
Carub.0003s0470 Capsella rubella HOM05D001137 ORTHO05D001967 2.2e-08 61.6 54 59.3
DCAR_029395 Daucus carota HOM05D001137 ORTHO05D001967 2.2e-08 61.6 50 62.0
SEGI_30119 Sequoiadendron giganteum HOM05D001137 ORTHO05D001967 2.2e-08 61.6 50 62.0
TAR365G1066 Trochodendron aralioides HOM05D001137 ORTHO05D001967 2.2e-08 61.6 54 63.0
Aa31LG5G15960 Aethionema arabicum HOM05D001137 ORTHO05D001967 2.8e-08 61.2 54 61.1
AL3G15980 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 2.8e-08 61.2 54 59.3
Sp3g04280 Schrenkiella parvula HOM05D001137 ORTHO05D001967 2.8e-08 61.2 50 64.0
CARHR186160 Cardamine hirsuta HOM05D001137 ORTHO05D001967 4.8e-08 60.5 50 62.0
Cc02_g31050 Coffea canephora HOM05D001137 ORTHO05D001967 4.8e-08 60.5 50 62.0
Nitab4.5_0002432g0050 Nicotiana tabacum HOM05D001137 ORTHO05D001967 4.8e-08 60.5 54 55.6
Sp2g20790 Schrenkiella parvula HOM05D001137 ORTHO05D015495 4.8e-08 60.5 54 59.3
Carub.0006s2496 Capsella rubella HOM05D001137 ORTHO05D001967 6.3e-08 60.1 50 62.0
AL6G39400 Arabidopsis lyrata HOM05D001137 ORTHO05D001967 8.2e-08 59.7 50 60.0
Thhalv10003780m.g Eutrema salsugineum HOM05D001137 ORTHO05D001967 8.2e-08 59.7 49 63.3
Nn3g21409 Nelumbo nucifera HOM05D001137 ORTHO05D001967 8.2e-08 59.7 50 62.0
Ah.04g160450 Amaranthus hybridus HOM05D001137 ORTHO05D001967 1.1e-07 59.3 51 62.7
CDE01G0048 Ceratophyllum demersum HOM05D001137 ORTHO05D001967 1.1e-07 59.3 50 64.0
CDE12G0037 Ceratophyllum demersum HOM05D001137 ORTHO05D001967 1.1e-07 59.3 50 64.0
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 1.4e-07 58.9 54 55.6
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 1.4e-07 58.9 54 55.6
HPP92_011343 Vanilla planifolia HOM05D001137 ORTHO05D001967 1.4e-07 58.9 54 51.9
AT5G27630 Arabidopsis thaliana HOM05D001137 ORTHO05D001967 1.8e-07 58.5 50 58.0
Ah.06g189620 Amaranthus hybridus HOM05D001137 ORTHO05D001967 4.1e-07 57.4 51 58.8
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 5.3e-07 57.0 55 56.4
A02p38690 Brassica napus HOM05D001137 ORTHO05D001967 6.9e-07 56.6 50 54.0
BraA02t08845Z Brassica rapa HOM05D001137 ORTHO05D001967 6.9e-07 56.6 50 54.0
Aa31LG11G9380 Aethionema arabicum HOM05D001137 ORTHO05D001967 9.0e-07 56.2 50 58.0
Lalb_Chr15g0077291 Lupinus albus HOM05D001137 ORTHO05D001967 1.2e-06 55.8 50 56.0
PSO170G2566 Papaver somniferum HOM05D001137 ORTHO05D001967 1.2e-06 55.8 54 53.7
BcaC03g17794 Brassica carinata HOM05D001137 ORTHO05D001967 2.6e-06 54.7 50 52.0
PGR083G1814 Punica granatum HOM05D001137 ORTHO05D001967 2.6e-06 54.7 54 53.7
C02p58200 Brassica napus HOM05D001137 ORTHO05D001967 4.5e-06 53.9 50 50.0
BolC2t11887H Brassica oleracea HOM05D001137 ORTHO05D001967 4.5e-06 53.9 50 50.0
PSO210G0810 Papaver somniferum HOM05D001137 ORTHO05D001967 4.5e-06 53.9 54 51.9


User provided reference genes

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