Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391501 Rosa chinensis HOM05D000515 ORTHO05D043508 1.4e-78 296.2 150 100.0
RcHm_v2.0_Chr4g0391631 Rosa chinensis HOM05D000515 ORTHO05D003188 7.0e-70 267.3 149 89.9
RcHm_v2.0_Chr4g0391421 Rosa chinensis HOM05D000515 ORTHO05D003188 1.3e-34 150.2 80 90.0
FvH4_4g03132 Fragaria vesca HOM05D000515 ORTHO05D003188 1.5e-32 143.3 168 48.8
MD16G1213200 Malus domestica HOM05D000515 ORTHO05D003188 5.1e-28 128.3 83 69.9
Prupe.1G034800 Prunus persica HOM05D000515 ORTHO05D003188 2.1e-26 122.9 120 55.8
RcHm_v2.0_Chr4g0391801 Rosa chinensis HOM05D000515 ORTHO05D003188 2.4e-25 119.4 76 75.0
FvH4_4g03180 Fragaria vesca HOM05D000515 ORTHO05D003188 7.6e-24 114.4 76 72.4
FAN12G3454 Fragaria x ananassa HOM05D000515 ORTHO05D003188 1.7e-23 113.2 76 71.1
TWI53G0250 Tripterygium wilfordii HOM05D000515 ORTHO05D003188 6.9e-17 91.3 61 63.9
QL06p016661 Quercus lobata HOM05D000515 ORTHO05D003188 2.6e-16 89.4 66 63.6
CsaV3_3G012370 Cucumis sativus L. HOM05D000515 ORTHO05D003188 5.9e-16 88.2 56 69.6
ClCG05G004470 Citrullus lanatus HOM05D000515 ORTHO05D003188 7.6e-16 87.8 56 67.9
CANSAT78G1604 Cannabis sativa HOM05D000515 ORTHO05D003188 3.8e-15 85.5 78 51.3
TWI53G1761 Tripterygium wilfordii HOM05D000515 ORTHO05D003188 3.8e-15 85.5 145 37.2
MELO3C006446.2 Cucumis melo HOM05D000515 ORTHO05D003188 5.0e-15 85.1 56 67.9
Sed0008142 Sechium edule HOM05D000515 ORTHO05D003188 1.1e-14 84.0 95 46.3
Lj6g0012690 Lotus japonicus HOM05D000515 ORTHO05D003188 3.6e-13 79.0 82 51.2
COL.COLO4_15829 Corchorus olitorius HOM05D000515 ORTHO05D003188 6.1e-13 78.2 105 47.6
Cfa008350 Carpinus fangiana HOM05D000515 ORTHO05D003188 1.0e-12 77.4 80 51.2
Haze_11335 Corylus avellana HOM05D000515 ORTHO05D003188 1.4e-12 77.0 80 51.2
Manes.15G038300 Manihot esculenta HOM05D000515 ORTHO05D003188 1.8e-12 76.6 78 48.7
Eucgr.H03138 Eucalyptus grandis HOM05D000515 ORTHO05D003188 3.0e-12 75.9 92 42.4
Psat0s1076g0040 Pisum sativum HOM05D000515 ORTHO05D003188 5.1e-12 75.1 82 46.3
Psat5g205440 Pisum sativum HOM05D000515 ORTHO05D022581 5.1e-12 75.1 82 46.3
Medtr1g044120 Medicago truncatula HOM05D000515 ORTHO05D003188 6.7e-12 74.7 67 49.3
THA.LOC104815987 Tarenaya hassleriana HOM05D000515 ORTHO05D003188 6.7e-12 74.7 97 41.2
Gohir.D09G226900 Gossypium hirsutum HOM05D000515 ORTHO05D003188 1.5e-11 73.6 69 56.5
Gorai.006G248800 Gossypium raimondii HOM05D000515 ORTHO05D003188 1.5e-11 73.6 69 56.5
Nn1g02704 Nelumbo nucifera HOM05D000515 ORTHO05D003188 1.9e-11 73.2 89 46.1
Ca_11962_v3 Cicer arietinum L. HOM05D000515 ORTHO05D003188 2.5e-11 72.8 67 49.3
TAR636G3138 Trochodendron aralioides HOM05D000515 ORTHO05D003188 2.5e-11 72.8 82 50.0
Thecc.04G250100 Theobroma cacao HOM05D000515 ORTHO05D003188 3.3e-11 72.4 57 61.4
Duzib212G0273 Durio zibethinus HOM05D000515 ORTHO05D003188 4.3e-11 72.0 57 63.2
Cpa.g.sc44.87 Carica papaya HOM05D000515 ORTHO05D043508 9.7e-11 70.9 113 40.7
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 9.7e-11 70.9 95 42.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 9.7e-11 70.9 55 58.2
AL8G16770 Arabidopsis lyrata HOM05D000515 ORTHO05D003188 1.3e-10 70.5 106 43.4
Gohir.A09G225200 Gossypium hirsutum HOM05D000515 ORTHO05D003188 1.3e-10 70.5 69 55.1
Lsat_1_v5_gn_3_122280 Lactuca sativa HOM05D000515 ORTHO05D003188 1.3e-10 70.5 74 48.6
FvH4_4g03130 Fragaria vesca HOM05D000515 ORTHO05D022581 2.2e-10 69.7 49 69.4
Nitab4.5_0001441g0010 Nicotiana tabacum HOM05D000515 ORTHO05D003188 2.8e-10 69.3 53 58.5
AT5G43530 Arabidopsis thaliana HOM05D000515 ORTHO05D003188 3.7e-10 68.9 106 42.5
Rhsim04G0188100 Rhododendron simsii HOM05D000515 ORTHO05D003188 4.8e-10 68.6 101 40.6
CSS0015653 Camellia sinensis var. sinensis HOM05D000515 ORTHO05D003188 6.3e-10 68.2 92 40.2
A06p47830 Brassica napus HOM05D000515 ORTHO05D003188 8.2e-10 67.8 77 46.8
BraA06t27653Z Brassica rapa HOM05D000515 ORTHO05D003188 8.2e-10 67.8 77 46.8
Cc03_g05140 Coffea canephora HOM05D000515 ORTHO05D015620 8.2e-10 67.8 56 53.6
Aa31LG5G3650 Aethionema arabicum HOM05D000515 ORTHO05D003188 1.4e-09 67.0 56 58.9
C07p26160 Brassica napus HOM05D000515 ORTHO05D003188 1.4e-09 67.0 67 50.7
BolC7t43142H Brassica oleracea HOM05D000515 ORTHO05D003188 1.4e-09 67.0 66 51.5
Potri.003G083400 Populus trichocarpa HOM05D000515 ORTHO05D003188 1.4e-09 67.0 76 47.4
Carub.0008s0509 Capsella rubella HOM05D000515 ORTHO05D003188 1.8e-09 66.6 126 36.5
CARHR180100 Cardamine hirsuta HOM05D000515 ORTHO05D003188 1.8e-09 66.6 79 48.1
SGA_v2.0_scaffold101G29837 Striga asiatica HOM05D000515 ORTHO05D003188 1.8e-09 66.6 76 42.1
vmacro08449 Vaccinium macrocarpon HOM05D000515 ORTHO05D003188 2.4e-09 66.2 148 32.4
CAN.G638.64 Capsicum annuum HOM05D000515 ORTHO05D003188 3.1e-09 65.9 53 58.5
Glyma.20G087900 Glycine max HOM05D000515 ORTHO05D003188 3.1e-09 65.9 89 44.9
BcaC06g31693 Brassica carinata HOM05D000515 ORTHO05D003188 4.1e-09 65.5 134 35.1
Nitab4.5_0000436g0150 Nicotiana tabacum HOM05D000515 ORTHO05D003188 4.1e-09 65.5 53 56.6
Peaxi162Scf00782g00007 Petunia axillaris HOM05D000515 ORTHO05D003188 5.3e-09 65.1 53 54.7
HanXRQChr13g0425471 Helianthus annuus HOM05D000515 ORTHO05D003188 6.9e-09 64.7 62 48.4
MSTRG.4116 Avicennia marina HOM05D000515 ORTHO05D003188 9.1e-09 64.3 122 32.0
BcaC06g34647 Brassica carinata HOM05D000515 ORTHO05D003188 9.1e-09 64.3 66 50.0
Lj6C660T6 Lonicera japonica HOM05D000515 ORTHO05D003188 1.2e-08 63.9 89 40.4
PGSC0003DMG400013449 Solanum tuberosum HOM05D000515 ORTHO05D003188 1.2e-08 63.9 47 61.7
Solyc03g005460.4 Solanum lycopersicum HOM05D000515 ORTHO05D003188 2.0e-08 63.2 53 54.7
Sopen03g001490 Solanum pennellii HOM05D000515 ORTHO05D003188 2.0e-08 63.2 53 54.7
ECA240G0965 Erigeron canadensis HOM05D000515 ORTHO05D003188 2.6e-08 62.8 81 44.4
Phvul.007G272200 Phaseolus vulgaris HOM05D000515 ORTHO05D003188 4.5e-08 62.0 76 44.7
Migut.G00450 Erythranthe guttata HOM05D000515 ORTHO05D003188 5.9e-08 61.6 42 61.9
arahy.Tifrunner.gnm1.ann1.H93RW9 Arachis hypogaea HOM05D000515 ORTHO05D003188 1.0e-07 60.8 69 43.5
Lalb_Chr03g0037131 Lupinus albus HOM05D000515 ORTHO05D003188 1.0e-07 60.8 61 49.2
VMungo0720G2274 Vigna mungo HOM05D000515 ORTHO05D003188 1.7e-07 60.1 84 41.7
arahy.Tifrunner.gnm1.ann1.BW40WK Arachis hypogaea HOM05D000515 ORTHO05D003188 2.2e-07 59.7 81 40.7
DCAR_027294 Daucus carota HOM05D000515 ORTHO05D003188 6.5e-07 58.2 84 36.9
Sc02g0003830 Simmondsia chinensis HOM05D000515 ORTHO05D003188 8.5e-07 57.8 78 41.0
Os04g0177300 Oryza sativa ssp. japonica HOM05D000515 ORTHO05D022581 2.5e-06 56.2 86 40.7
Aqoxy2G03615 Aquilegia oxysepala HOM05D000515 ORTHO05D003188 5.5e-06 55.1 65 40.0
MBI17_g19509_MAGBIO Magnolia biondii HOM05D000515 ORTHO05D003188 5.5e-06 55.1 159 29.6


User provided reference genes

Program Settings