Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 3.9e-108 394.8 200 100.0
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-104 383.3 197 99.0
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.1e-85 319.3 184 90.8
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.8e-79 298.5 196 77.6
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 8.5e-79 297.4 196 77.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 6.9e-73 277.7 196 67.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.9e-69 264.2 195 64.6
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.0e-68 263.8 194 68.6
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.4e-68 263.5 195 63.6
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 9.7e-67 257.3 196 63.3
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.8e-66 255.8 196 64.8
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 4.8e-66 255.0 195 65.1
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.8e-65 253.1 186 64.5
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 4.1e-65 251.9 190 64.7
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.6e-64 249.2 194 63.4
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 5.9e-64 248.1 192 64.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 7.7e-64 247.7 193 62.2
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.7e-63 246.5 192 62.0
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 2.9e-63 245.7 195 60.0
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 8.5e-63 244.2 192 63.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.2e-62 241.9 191 62.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.1e-61 239.6 194 62.4
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.7e-61 239.2 191 61.8
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.6e-61 238.8 192 61.5
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.7e-61 238.4 189 63.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.8e-60 236.5 196 57.1
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.3e-60 236.1 195 57.4
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 5.2e-60 235.0 194 61.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 6.7e-60 234.6 193 62.2
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.2e-59 233.8 192 59.4
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.5e-59 233.4 195 61.0
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.5e-59 233.4 195 59.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.5e-59 233.4 196 57.7
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.4e-59 231.9 191 59.7
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 4.4e-59 231.9 195 55.9
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 9.7e-59 230.7 197 55.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 9.7e-59 230.7 195 56.9
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.7e-58 229.9 194 55.7
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.2e-58 229.6 193 58.5
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.8e-58 229.2 191 58.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 193 59.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.8e-57 226.5 196 57.7
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.8e-57 226.5 194 57.2
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.1e-57 225.7 195 55.9
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.3e-57 224.9 195 55.4
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.3e-57 224.9 191 57.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 5.3e-57 224.9 195 55.9
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 9.1e-57 224.2 192 58.3
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-56 223.8 195 55.9
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.6e-56 223.4 191 57.6
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.7e-56 222.6 189 57.7
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 3.5e-56 222.2 195 56.4
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 3.5e-56 222.2 194 55.7
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.5e-56 222.2 196 55.1
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 3.5e-56 222.2 196 54.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.5e-56 221.9 193 55.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.3e-55 220.3 195 56.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.8e-55 218.8 194 53.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 8.5e-55 217.6 191 55.5
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 8.5e-55 217.6 196 53.6
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-54 217.2 198 54.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.5e-54 216.9 114 94.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.2e-54 215.7 197 56.3
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 4.2e-54 215.3 198 53.5
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.2e-54 215.3 194 52.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.2e-54 215.3 191 57.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 7.2e-54 214.5 243 46.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.2e-54 214.5 191 55.5
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.4e-54 214.2 194 54.6
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.2e-53 213.8 198 54.5
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.6e-53 213.4 200 53.5
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.1e-53 213.0 195 54.4
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.7e-53 212.6 191 55.5
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.7e-53 212.6 191 53.4
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 8.0e-53 211.1 196 52.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 8.0e-53 211.1 191 55.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-52 210.3 190 54.7
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.0e-52 209.1 185 54.1
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.8e-52 208.0 195 53.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 6.8e-52 208.0 195 52.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-51 207.2 196 50.5
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.2e-51 207.2 195 52.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.2e-51 207.2 196 51.0
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.2e-51 207.2 196 52.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.5e-51 206.8 195 51.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-51 206.8 190 53.2
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 187 52.9
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.6e-51 206.1 195 50.8
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.4e-51 205.3 196 51.0
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.5e-51 204.5 191 52.4
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.5e-51 204.5 187 53.5
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.8e-51 204.1 191 53.4
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.3e-50 203.8 199 52.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.7e-50 203.4 194 52.1
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.8e-50 202.6 178 55.6
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 8.3e-50 201.1 192 49.5
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.4e-49 199.5 196 49.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 3.1e-49 199.1 193 51.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.1e-49 198.7 190 51.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 195 50.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.4e-49 198.4 196 52.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 7.0e-49 198.0 189 49.2
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 9.1e-49 197.6 196 49.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.6e-48 196.8 194 52.6
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.0e-48 196.4 198 49.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.5e-48 195.7 189 50.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.5e-48 195.3 189 48.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.5e-48 195.3 189 48.7
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.0e-47 194.1 196 51.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 194 51.5
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.7e-47 193.4 196 49.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.9e-47 192.6 185 51.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.8e-47 192.2 196 50.5
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.0e-47 191.8 197 51.3
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 6.5e-47 191.4 189 47.1
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 6.5e-47 191.4 141 66.0
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-46 190.7 196 49.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.5e-46 190.3 189 46.6
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.9e-46 189.9 195 46.7
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-46 189.5 196 49.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.5e-46 188.3 189 47.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 9.5e-46 187.6 189 47.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-45 187.2 175 53.1
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.2e-45 187.2 174 52.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.6e-45 186.8 192 49.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-45 186.4 196 48.0
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-45 186.4 196 48.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-45 185.3 196 48.5
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.7e-45 185.3 195 48.7
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.7e-45 185.3 189 47.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 6.1e-45 184.9 196 47.4
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.4e-44 183.7 175 54.9
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-44 183.0 196 48.0
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.3e-44 183.0 145 58.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 5.2e-44 181.8 198 47.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.4e-43 178.7 198 47.5
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.7e-42 176.8 198 47.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 6.3e-42 174.9 190 47.4
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.8e-41 173.3 192 45.8
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.4e-41 172.9 166 50.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 9.2e-41 171.0 192 45.8
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.6e-40 170.2 193 49.2
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 2.0e-40 169.9 143 55.9
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.0e-40 169.9 194 45.4
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.0e-40 169.9 190 45.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 4.5e-40 168.7 189 43.4
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.8e-40 167.9 172 51.7
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-39 166.8 130 60.8
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.3e-38 162.2 127 60.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 7.3e-38 161.4 161 50.9
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 2.8e-37 159.5 192 43.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.4e-36 157.1 192 43.8
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.5e-35 153.7 189 42.9
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.5e-35 151.4 163 46.6
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.5e-35 151.4 154 53.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 6.4e-34 148.3 197 43.7
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.2e-33 146.0 192 42.7
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.7e-32 142.9 105 72.4
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 6.0e-32 141.7 126 54.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.3e-31 139.8 157 44.6
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.0e-31 138.7 145 46.2
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 6.6e-31 138.3 195 39.5
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.5e-30 134.4 180 41.1
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-28 130.2 153 45.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.1e-22 110.9 111 54.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.5e-22 109.8 191 37.2
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.0e-20 102.4 91 67.0
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 6.8e-20 101.7 85 69.4
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.2e-18 96.7 190 32.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 3.5e-16 89.4 210 31.0
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.1e-14 84.3 185 33.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.1e-14 84.3 191 31.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 9.5e-14 81.3 200 29.5
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-13 80.9 74 62.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.6e-13 79.3 77 48.1
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 3.6e-13 79.3 84 48.8
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.0e-11 73.6 168 31.0
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.9e-10 69.7 76 42.1


User provided reference genes

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