Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.3e-104 381.7 192 100.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 4.0e-86 321.6 184 90.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.5e-85 318.2 184 90.2
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.4e-69 265.4 184 74.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-68 263.5 184 73.9
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 9.0e-62 240.7 182 63.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-59 233.8 181 65.7
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.4e-59 230.7 180 61.7
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.2e-58 230.3 180 60.6
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.2e-58 230.3 180 60.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 3.0e-57 225.7 183 61.2
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 3.9e-57 225.3 183 61.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.9e-56 223.0 180 61.1
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 2.5e-56 222.6 179 60.3
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 4.3e-56 221.9 183 60.7
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.7e-56 221.5 181 59.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 7.4e-56 221.1 181 61.9
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 6.3e-55 218.0 182 57.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 8.2e-55 217.6 181 60.2
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.8e-54 216.5 181 59.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.4e-54 216.1 185 58.4
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.9e-54 214.5 181 60.2
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-53 213.8 181 58.0
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-53 213.8 181 59.1
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-53 213.8 181 58.6
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.4e-53 212.2 185 57.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 7.7e-53 211.1 181 56.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.1e-51 207.2 178 57.3
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.4e-51 206.8 178 56.2
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.4e-51 206.8 180 57.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.2e-51 205.3 178 56.7
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 5.5e-51 204.9 180 58.9
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 7.2e-51 204.5 187 53.5
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.2e-50 203.8 184 53.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.6e-50 203.4 181 58.6
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.6e-50 203.4 181 56.4
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.6e-50 203.4 181 55.8
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.7e-50 201.8 179 54.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.3e-49 199.5 179 55.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.3e-49 199.5 179 55.3
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 6.7e-49 198.0 181 53.6
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 6.7e-49 198.0 181 54.1
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.1e-48 197.2 179 52.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.0e-48 196.4 181 54.7
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.6e-48 196.1 183 54.1
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.6e-48 196.1 181 53.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 3.3e-48 195.7 179 52.0
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.3e-48 195.7 181 54.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.7e-48 194.9 179 53.6
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.4e-48 194.5 182 54.4
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.4e-48 194.5 178 54.5
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 9.7e-48 194.1 179 53.1
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.7e-47 193.4 181 53.6
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.2e-47 193.0 176 54.0
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.2e-47 193.0 179 51.4
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.1e-46 190.7 181 51.4
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.8e-46 189.9 176 52.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.8e-46 189.9 181 52.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.8e-46 189.9 183 51.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 7.0e-46 188.0 182 51.1
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.0e-46 188.0 179 53.1
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 9.1e-46 187.6 183 52.5
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.5e-45 186.8 179 50.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-45 186.8 181 50.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.5e-45 186.8 181 50.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-45 186.8 181 50.8
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-45 186.8 181 50.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.0e-45 186.4 181 49.2
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.0e-45 186.4 181 49.2
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.6e-45 186.0 187 49.2
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.4e-45 185.7 179 53.6
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.5e-45 185.3 183 51.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 5.9e-45 184.9 179 49.7
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 7.7e-45 184.5 178 51.1
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.0e-44 184.1 181 49.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-44 184.1 179 52.5
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.0e-44 184.1 178 52.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-44 183.7 177 50.8
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.2e-44 183.0 180 50.6
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.8e-44 182.2 183 50.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.8e-44 182.2 181 50.3
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 6.5e-44 181.4 179 49.2
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 8.5e-44 181.0 181 49.7
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 8.5e-44 181.0 178 50.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 8.5e-44 181.0 177 53.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.1e-43 180.6 179 49.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.4e-43 180.3 181 49.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.9e-43 179.9 175 52.0
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.5e-43 179.5 179 47.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.2e-43 179.1 181 49.2
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.2e-43 178.7 184 49.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.5e-43 178.3 181 48.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.4e-43 177.6 183 48.6
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.2e-42 177.2 142 60.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.6e-42 176.8 185 48.6
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-42 176.8 179 47.5
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.1e-42 176.4 182 49.5
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 2.1e-42 176.4 176 47.7
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.7e-42 176.0 181 46.4
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.7e-42 176.0 230 42.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.6e-42 175.6 181 48.1
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.7e-42 175.3 187 48.7
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-42 175.3 182 50.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-42 175.3 100 88.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 4.7e-42 175.3 181 50.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 6.1e-42 174.9 181 47.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 6.1e-42 174.9 181 45.9
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 6.1e-42 174.9 179 47.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-41 174.1 182 48.9
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.8e-41 173.3 187 44.9
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.3e-41 172.9 182 50.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-41 172.9 182 48.9
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.3e-41 172.9 186 45.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.0e-41 172.6 172 51.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.2e-41 171.8 181 47.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 6.7e-41 171.4 181 45.9
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 6.7e-41 171.4 181 45.9
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 6.7e-41 171.4 179 46.9
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-40 169.9 182 47.3
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.6e-40 169.5 182 47.8
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.6e-40 169.5 146 54.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.3e-40 169.1 176 48.9
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.7e-40 168.3 190 45.8
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 9.7e-40 167.5 175 48.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 9.7e-40 167.5 183 46.4
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-39 166.8 182 47.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 3.7e-39 165.6 181 47.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.8e-39 165.2 178 48.3
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-38 164.1 176 49.4
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-38 164.1 175 47.4
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-38 164.1 183 47.0
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.8e-38 163.3 167 47.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.4e-38 162.9 183 47.5
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.1e-38 162.2 184 48.4
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 4.1e-38 162.2 155 51.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.3e-38 161.8 181 47.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 9.1e-38 161.0 181 44.2
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-37 160.6 184 44.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.8e-36 155.6 183 45.4
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 8.5e-36 154.5 181 42.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.1e-35 154.1 176 45.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 7.2e-35 151.4 181 42.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-34 150.6 165 46.7
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 2.1e-34 149.8 185 43.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.7e-34 149.4 117 59.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.8e-33 146.7 128 56.2
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.5e-32 143.7 132 51.5
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.0e-32 143.3 181 42.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.4e-32 142.1 164 43.9
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 9.7e-32 141.0 181 42.0
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 9.7e-32 141.0 178 42.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.3e-31 140.6 186 41.4
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.7e-31 140.2 183 43.7
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.8e-31 139.4 161 44.7
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 8.2e-31 137.9 178 42.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.8e-30 136.7 155 49.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.4e-30 136.3 149 43.6
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.9e-29 131.7 167 43.7
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 8.5e-28 127.9 119 51.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-26 123.6 144 41.7
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.7e-26 122.9 179 39.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 6.1e-26 121.7 177 40.1
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.0e-26 121.3 92 69.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.5e-24 114.8 153 41.2
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 1.2e-18 97.4 109 48.6
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.6e-18 97.1 91 63.7
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.0e-18 94.7 85 67.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.8e-15 86.3 80 52.5
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.9e-12 76.3 212 29.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.9e-12 76.3 66 54.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.9e-12 76.3 84 45.2
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.0e-12 75.5 74 59.5
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 7.3e-11 71.6 102 41.2
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.0e-09 67.8 184 30.4
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.3e-09 66.6 60 56.7
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-08 63.9 66 45.5
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.9e-06 57.0 68 38.2


User provided reference genes

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