Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 6.7e-60 233.8 116 100.0
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-55 219.9 116 94.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 3.8e-55 218.0 114 94.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-45 186.0 116 79.3
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.6e-45 184.9 116 79.3
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.1e-41 173.3 100 88.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.7e-34 148.3 114 61.4
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 5.3e-33 144.4 116 60.3
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 7.0e-33 144.1 108 71.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 5.9e-32 141.0 114 57.9
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 5.9e-32 141.0 114 57.9
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 7.7e-32 140.6 114 59.6
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.3e-31 139.8 114 57.9
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.8e-31 138.3 114 56.1
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 6.5e-31 137.5 114 53.5
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.5e-31 137.1 111 59.5
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.5e-30 136.3 114 53.5
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.9e-30 136.0 114 55.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.5e-30 135.6 114 56.1
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.2e-30 135.2 114 57.9
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.2e-30 134.8 114 57.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 4.2e-30 134.8 114 56.1
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.1e-29 132.5 113 54.9
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.7e-29 132.1 114 57.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.0e-29 130.6 109 57.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.0e-29 130.6 109 57.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 8.0e-29 130.6 114 52.6
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 8.0e-29 130.6 113 54.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 8.0e-29 130.6 113 55.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.0e-28 130.2 107 58.9
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.0e-28 130.2 114 51.8
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.8e-28 129.4 114 50.0
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.8e-28 129.4 113 55.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.3e-28 129.0 114 54.4
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.0e-28 128.6 107 58.9
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.0e-28 128.6 113 52.2
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 3.0e-28 128.6 114 54.4
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 3.0e-28 128.6 114 53.5
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 5.2e-28 127.9 114 56.1
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 6.7e-28 127.5 114 54.4
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 6.7e-28 127.5 113 54.0
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 6.7e-28 127.5 113 54.0
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 8.8e-28 127.1 113 54.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.1e-27 126.7 114 52.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.5e-27 126.3 109 56.0
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.5e-27 126.3 113 54.0
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 2.0e-27 125.9 114 53.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.0e-27 125.9 114 51.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.6e-27 125.6 115 55.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.3e-27 125.2 111 55.0
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 3.3e-27 125.2 114 51.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 3.3e-27 125.2 113 54.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 5.7e-27 124.4 115 51.3
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.7e-27 124.4 114 50.9
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 5.7e-27 124.4 114 54.4
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.7e-27 124.4 114 52.6
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 7.4e-27 124.0 113 53.1
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.3e-26 123.2 114 50.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.7e-26 122.9 115 50.4
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.7e-26 122.9 114 50.0
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.8e-26 122.1 105 54.3
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.7e-26 121.7 113 51.3
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.8e-26 121.3 114 49.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.8e-26 121.3 113 52.2
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.8e-26 121.3 113 51.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 6.3e-26 120.9 113 52.2
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.3e-26 120.9 113 53.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 6.3e-26 120.9 114 49.1
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 8.2e-26 120.6 113 50.4
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 8.2e-26 120.6 113 50.4
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.4e-25 119.8 113 52.2
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.4e-25 119.8 113 50.4
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.8e-25 119.4 109 53.2
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.4e-25 119.0 113 50.4
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.4e-25 119.0 113 52.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.1e-25 118.6 108 52.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.1e-25 118.6 113 50.4
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.1e-25 118.2 113 50.4
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.3e-25 117.9 107 52.3
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.3e-25 117.9 113 51.3
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 5.3e-25 117.9 114 48.2
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 5.3e-25 117.9 114 48.2
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-24 116.7 114 50.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.2e-24 116.7 113 50.4
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.0e-24 115.9 114 48.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.5e-24 115.2 103 54.4
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 7.7e-24 114.0 109 48.6
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.7e-24 114.0 114 49.1
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.0e-23 113.6 161 38.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.7e-23 112.8 114 46.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.7e-23 112.8 109 51.4
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-23 112.8 109 52.3
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 2.9e-23 112.1 107 47.7
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.8e-23 111.7 109 51.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 5.0e-23 111.3 115 52.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 6.5e-23 110.9 109 48.6
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.5e-23 110.9 107 48.6
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.5e-23 110.9 109 48.6
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 8.5e-23 110.5 114 46.5
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-22 110.2 115 51.3
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.5e-22 109.8 114 43.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.5e-22 109.8 109 51.4
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.9e-22 109.4 109 45.9
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.9e-22 109.4 109 48.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.2e-22 108.2 114 47.4
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.5e-22 107.8 114 47.4
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.5e-22 107.8 114 46.5
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 7.2e-22 107.5 113 48.7
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 9.4e-22 107.1 107 44.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 9.4e-22 107.1 109 44.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 9.4e-22 107.1 109 44.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 9.4e-22 107.1 114 47.4
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.2e-21 106.7 114 46.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-21 106.3 113 47.8
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.1e-21 105.9 114 45.6
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.7e-21 105.5 114 45.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.7e-21 105.5 109 48.6
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 2.7e-21 105.5 114 47.4
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.6e-21 105.1 113 46.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.6e-21 105.1 109 45.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-21 104.8 113 46.9
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.7e-21 104.8 114 42.1
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.7e-21 104.8 116 46.6
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 6.1e-21 104.4 114 44.7
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 6.1e-21 104.4 114 44.7
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 8.0e-21 104.0 109 44.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.4e-20 103.2 109 46.8
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.4e-20 103.2 109 43.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-20 103.2 117 45.3
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.0e-20 102.1 95 53.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 3.0e-20 102.1 113 46.9
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 3.0e-20 102.1 114 44.7
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.0e-20 102.1 116 44.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 4.0e-20 101.7 113 45.1
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.2e-20 101.3 91 65.9
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.2e-20 101.3 117 45.3
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 6.8e-20 100.9 113 44.2
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 8.8e-20 100.5 85 68.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.2e-19 100.1 109 45.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.2e-19 100.1 113 45.1
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.5e-19 99.8 95 50.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-19 99.8 113 46.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-19 98.6 115 44.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 9.7e-19 97.1 105 41.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.3e-18 96.7 104 46.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.7e-18 96.3 117 41.9
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.3e-18 94.0 105 43.8
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.1e-17 93.6 107 45.8
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.4e-17 93.2 109 40.4
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.8e-17 92.8 100 43.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.1e-17 92.0 92 48.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.1e-17 91.7 86 51.2
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.2e-16 90.1 113 41.6
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.7e-16 89.0 93 47.3
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.5e-16 88.2 111 38.7
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 5.9e-16 87.8 113 41.6
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 1.3e-15 86.7 107 42.1
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 5.0e-15 84.7 63 63.5
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 5.0e-15 84.7 81 50.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 2.5e-14 82.4 114 39.5
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.5e-14 81.3 74 62.2
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.7e-13 79.0 63 55.6
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.3e-12 75.9 77 45.5
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.8e-12 74.3 115 38.3
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.8e-09 66.2 78 38.5
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.2e-08 63.5 45 62.2
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-08 63.2 58 51.7
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.9e-08 61.2 63 46.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 7.7e-08 60.8 114 32.5


User provided reference genes

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