Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.2e-256 889.4 467 100.0
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 4.2e-238 827.8 467 92.3
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 4.8e-234 814.3 467 90.6
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.7e-231 805.8 489 86.7
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 4.1e-209 731.5 474 82.3
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 4.5e-200 701.4 469 76.5
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 2.9e-199 698.7 469 77.6
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 5.0e-199 698.0 467 78.2
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 4.3e-198 694.9 468 79.1
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.2e-197 693.3 467 75.2
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 2.1e-197 692.6 426 81.7
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 4.7e-197 691.4 426 81.7
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 7.5e-195 684.1 467 76.7
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 6.4e-194 681.0 469 76.3
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 1.1e-193 680.2 469 75.3
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 1.1e-193 680.2 469 74.2
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 5.4e-193 677.9 468 74.8
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 1.6e-192 676.4 468 74.6
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 2.7e-192 675.6 469 73.1
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 4.6e-192 674.9 469 76.5
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.0e-191 673.7 469 74.0
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.0e-191 673.7 469 75.7
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.7e-191 672.9 382 92.9
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.3e-191 672.5 469 72.1
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.3e-191 672.5 469 73.8
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 3.9e-191 671.8 472 76.5
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 3.9e-191 671.8 469 76.1
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 5.0e-191 671.4 469 75.3
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 5.0e-191 671.4 469 75.7
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 8.6e-191 670.6 468 76.3
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 1.1e-190 670.2 467 73.4
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 1.1e-190 670.2 494 72.1
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 3.3e-190 668.7 469 74.6
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 3.3e-190 668.7 469 72.9
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 4.3e-190 668.3 419 79.5
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 5.6e-190 667.9 469 73.1
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 2.8e-189 665.6 470 74.7
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 4.7e-189 664.8 469 75.3
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 8.0e-189 664.1 469 72.1
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.2e-187 660.2 469 71.0
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.0e-187 659.4 470 74.5
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.0e-187 659.4 469 74.6
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 2.6e-187 659.1 469 71.6
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 3.4e-187 658.7 417 78.9
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 9.8e-187 657.1 467 73.2
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 4.9e-186 654.8 467 72.6
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.4e-186 654.4 469 72.1
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 8.3e-186 654.1 468 71.6
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.1e-185 653.7 468 70.9
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 7.1e-185 651.0 471 76.0
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 7.1e-185 651.0 469 72.5
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 9.2e-185 650.6 468 70.9
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 3.5e-184 648.7 467 72.2
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 3.5e-184 648.7 467 72.2
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 3.5e-184 648.7 467 72.2
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 3.5e-184 648.7 469 71.2
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.6e-184 648.3 467 71.3
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 6.0e-184 647.9 469 71.4
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 7.8e-184 647.5 468 72.6
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 7.8e-184 647.5 449 75.9
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 1.0e-183 647.1 467 73.4
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.3e-183 646.7 467 71.5
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 5.1e-183 644.8 470 73.8
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 6.6e-183 644.4 469 75.1
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 6.6e-183 644.4 469 71.4
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 6.6e-183 644.4 467 72.4
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.1e-182 643.7 468 72.0
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.9e-182 642.9 469 71.2
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 1.9e-182 642.9 467 72.2
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 2.5e-182 642.5 469 72.1
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 9.5e-182 640.6 467 71.1
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 1.2e-181 640.2 467 71.5
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.2e-181 640.2 467 69.8
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.2e-181 640.2 462 71.4
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 4.7e-181 638.3 469 71.9
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 8.1e-181 637.5 467 70.2
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 8.1e-181 637.5 467 71.7
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 4.0e-180 635.2 467 73.0
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 4.0e-180 635.2 470 71.1
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 6.8e-180 634.4 497 69.2
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 1.2e-179 633.6 467 70.2
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.2e-179 633.6 467 71.7
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 1.5e-179 633.3 467 70.7
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 1.5e-179 633.3 467 69.8
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 9.9e-179 630.6 469 71.2
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 3.7e-178 628.6 470 72.1
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 6.4e-178 627.9 469 69.9
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 8.3e-178 627.5 484 66.3
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.1e-177 627.1 468 72.0
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.1e-177 627.1 470 72.1
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 3.2e-177 625.5 470 72.3
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.3e-175 620.2 470 70.0
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.3e-175 619.4 468 72.9
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 3.9e-175 618.6 468 69.4
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.1e-175 618.2 469 72.3
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 8.6e-175 617.5 515 65.0
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 5.6e-174 614.8 469 69.7
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 6.2e-173 611.3 419 72.8
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 2.4e-169 599.4 419 72.3
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.2e-168 597.0 400 72.5
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 7.8e-168 594.3 400 73.5
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 3.9e-167 592.0 465 65.4
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.9e-166 589.7 468 65.6
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 5.3e-164 581.6 474 66.0
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.0e-163 579.7 458 67.0
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 5.4e-161 571.6 470 67.0
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 3.5e-160 568.9 465 64.7
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 3.3e-158 562.4 420 65.2
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 7.6e-155 551.2 416 68.5
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 3.8e-154 548.9 398 71.4
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 3.8e-154 548.9 457 63.5
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 2.7e-136 489.6 417 60.2
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.3e-133 480.7 323 74.9
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 1.2e-131 474.2 416 58.2
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.2e-128 464.2 403 57.6
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.7e-109 399.4 459 49.2
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 4.4e-102 375.9 287 65.2
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 7.5e-94 348.6 414 48.8
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 9.8e-94 348.2 536 37.3
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.0e-90 338.2 266 71.8
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 7.3e-73 278.9 188 72.3
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 2.3e-71 273.9 273 59.0
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.6e-59 234.6 261 56.3
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 2.1e-59 234.2 261 56.3
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.9e-53 213.0 207 58.9
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 6.9e-47 192.6 145 67.6
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 1.5e-41 174.9 173 59.0
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 2.5e-41 174.1 148 61.5
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 7.1e-36 156.0 125 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 8.7e-34 149.1 377 30.2
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 5.3e-31 139.8 127 62.2
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.4e-23 115.2 60 90.0
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 1.3e-18 98.6 59 76.3
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 2.4e-15 87.8 70 68.6
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.7e-13 81.6 59 74.6
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 8.2e-08 62.8 67 55.2


User provided reference genes

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