Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0386971 Rosa chinensis HOM05D000032 ORTHO05D026110 1.4e-66 256.1 130 100.0
RcHm_v2.0_Chr4g0413031 Rosa chinensis HOM05D000032 ORTHO05D026110 7.0e-66 253.8 129 99.2
RcHm_v2.0_Chr7g0222281 Rosa chinensis HOM05D000032 ORTHO05D007443 1.4e-34 149.8 91 86.8
FvH4_5g29390 Fragaria vesca HOM05D000032 ORTHO05D007443 1.2e-33 146.7 92 87.0
FAN04G2244 Fragaria x ananassa HOM05D000032 ORTHO05D007443 1.2e-33 146.7 92 87.0
FAN18G2124 Fragaria x ananassa HOM05D000032 ORTHO05D007443 6.0e-33 144.4 92 85.9
FAN13G1203 Fragaria x ananassa HOM05D000032 ORTHO05D007443 1.0e-32 143.7 92 84.8
FAN08G0861 Fragaria x ananassa HOM05D000032 ORTHO05D007443 6.2e-30 134.4 93 81.7
Potri.007G021800 Populus trichocarpa HOM05D000032 ORTHO05D007443 1.7e-24 116.3 97 68.0
Sabra07G0018900 Salix brachista HOM05D000032 ORTHO05D007443 1.1e-23 113.6 97 66.0
MD02G1190200 Malus domestica HOM05D000032 ORTHO05D007443 2.8e-22 109.0 97 63.9
Prupe.6G216200 Prunus persica HOM05D000032 ORTHO05D007443 2.8e-22 109.0 97 66.0
Cfa006775 Carpinus fangiana HOM05D000032 ORTHO05D007443 3.4e-20 102.1 99 63.6
Haze_03984 Corylus avellana HOM05D000032 ORTHO05D007443 5.8e-20 101.3 99 64.6
CANSAT64G0745 Cannabis sativa HOM05D000032 ORTHO05D007443 2.2e-19 99.4 96 59.4
QL06p038783 Quercus lobata HOM05D000032 ORTHO05D007443 6.4e-19 97.8 97 57.7
Manes.13G108500 Manihot esculenta HOM05D000032 ORTHO05D007443 1.4e-18 96.7 97 58.8
Dinv23050 Davidia involucrata HOM05D000032 ORTHO05D007443 2.4e-18 95.9 97 58.8
Actinidia36419 Actinidia chinensis HOM05D000032 ORTHO05D007443 5.4e-18 94.7 97 58.8
CAN.G79.11 Capsicum annuum HOM05D000032 ORTHO05D007443 1.2e-17 93.6 95 57.9
VMungo0720G2333 Vigna mungo HOM05D000032 ORTHO05D007443 1.6e-17 93.2 98 59.2
MELO3C007659.2 Cucumis melo HOM05D000032 ORTHO05D007443 2.7e-17 92.4 77 64.9
CsaV3_6G044370 Cucumis sativus L. HOM05D000032 ORTHO05D007443 2.7e-17 92.4 77 64.9
CSS0045534 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007443 6.0e-17 91.3 97 56.7
CiPaw.08G149900 Carya illinoinensis HOM05D000032 ORTHO05D007443 7.8e-17 90.9 97 56.7
COL.COLO4_11621 Corchorus olitorius HOM05D000032 ORTHO05D007443 1.0e-16 90.5 89 57.3
MBI16_g35719_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007443 1.0e-16 90.5 96 58.3
PGSC0003DMG400021177 Solanum tuberosum HOM05D000032 ORTHO05D007443 1.0e-16 90.5 93 58.1
Phvul.007G193500 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.7e-16 89.7 96 57.3
Peaxi162Scf00423g00221 Petunia axillaris HOM05D000032 ORTHO05D007443 2.3e-16 89.4 94 57.4
Nitab4.5_0001225g0240 Nicotiana tabacum HOM05D000032 ORTHO05D007443 3.9e-16 88.6 95 55.8
GSVIVG01007277001 Vitis vinifera HOM05D000032 ORTHO05D007443 3.9e-16 88.6 74 66.2
ClCG01G017830 Citrullus lanatus HOM05D000032 ORTHO05D007443 8.7e-16 87.4 95 54.7
Nn5g30290 Nelumbo nucifera HOM05D000032 ORTHO05D007443 1.1e-15 87.0 95 54.7
Rhsim10G0094500 Rhododendron simsii HOM05D000032 ORTHO05D007443 1.1e-15 87.0 98 59.2
Thecc.01G077000 Theobroma cacao HOM05D000032 ORTHO05D007443 1.1e-15 87.0 97 52.6
Cpa.g.sc125.34 Carica papaya HOM05D000032 ORTHO05D007443 1.5e-15 86.7 96 55.2
Duzib147G1507 Durio zibethinus HOM05D000032 ORTHO05D007443 1.5e-15 86.7 95 54.7
Nitab4.5_0010329g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007443 1.5e-15 86.7 95 54.7
AUR62004035 Chenopodium quinoa HOM05D000032 ORTHO05D007443 1.9e-15 86.3 80 61.2
Cc07_g07410 Coffea canephora HOM05D000032 ORTHO05D007443 2.5e-15 85.9 97 55.7
EL10Ac6g15590 Beta vulgaris HOM05D000032 ORTHO05D007443 3.3e-15 85.5 84 57.1
SGA_v2.0_scaffold121G33068 Striga asiatica HOM05D000032 ORTHO05D007443 3.3e-15 85.5 94 56.4
Ah.02g125290 Amaranthus hybridus HOM05D000032 ORTHO05D007443 4.3e-15 85.1 81 60.5
AUR62007544 Chenopodium quinoa HOM05D000032 ORTHO05D007443 4.3e-15 85.1 81 60.5
Gohir.D11G211100 Gossypium hirsutum HOM05D000032 ORTHO05D007443 5.6e-15 84.7 97 54.6
Gorai.007G226800 Gossypium raimondii HOM05D000032 ORTHO05D007443 5.6e-15 84.7 97 53.6
Solyc02g070100.3 Solanum lycopersicum HOM05D000032 ORTHO05D007443 7.3e-15 84.3 91 56.0
Sopen02g019260 Solanum pennellii HOM05D000032 ORTHO05D007443 7.3e-15 84.3 92 58.7
Sed0005463 Sechium edule HOM05D000032 ORTHO05D007443 9.6e-15 84.0 77 61.0
Sc16g0002800 Simmondsia chinensis HOM05D000032 ORTHO05D007443 9.6e-15 84.0 89 53.9
vmacro04601 Vaccinium macrocarpon HOM05D000032 ORTHO05D007443 9.6e-15 84.0 93 59.1
Phvul.007G179201 Phaseolus vulgaris HOM05D000032 ORTHO05D007443 1.3e-14 83.6 91 53.8
Atru.chr3.1066 Acer truncatum HOM05D000032 ORTHO05D007443 1.6e-14 83.2 104 54.8
Cpa.g.sc125.31 Carica papaya HOM05D000032 ORTHO05D007443 1.6e-14 83.2 83 59.0
Sed0018251 Sechium edule HOM05D000032 ORTHO05D007443 1.6e-14 83.2 77 61.0
Eucgr.H02337 Eucalyptus grandis HOM05D000032 ORTHO05D007443 2.8e-14 82.4 97 50.5
Glyma.10G152900 Glycine max HOM05D000032 ORTHO05D007443 2.8e-14 82.4 99 52.5
Oeu014318.2 Olea europaea HOM05D000032 ORTHO05D007443 2.8e-14 82.4 69 66.7
TAR381G1241 Trochodendron aralioides HOM05D000032 ORTHO05D007443 3.6e-14 82.0 100 55.0
Gohir.A11G211800 Gossypium hirsutum HOM05D000032 ORTHO05D007443 4.8e-14 81.6 97 53.6
Ciclev10025201m.g Citrus clementina HOM05D000032 ORTHO05D007443 8.1e-14 80.9 96 58.3
Lalb_Chr09g0323751 Lupinus albus HOM05D000032 ORTHO05D007443 8.1e-14 80.9 76 61.8
Migut.H00321 Erythranthe guttata HOM05D000032 ORTHO05D007443 1.4e-13 80.1 91 54.9
HanXRQChr10g0318711 Helianthus annuus HOM05D000032 ORTHO05D007443 3.1e-13 79.0 98 50.0
RcHm_v2.0_Chr4g0405541 Rosa chinensis HOM05D000032 ORTHO05D026110 3.1e-13 79.0 69 69.6
TWI74G1593 Tripterygium wilfordii HOM05D000032 ORTHO05D007443 6.9e-13 77.8 97 52.6
PGR102G1941 Punica granatum HOM05D000032 ORTHO05D007443 9.0e-13 77.4 102 48.0
Hund16419 Selenicereus undatus HOM05D000032 ORTHO05D007443 9.0e-13 77.4 81 56.8
SalBow3G3962 Salvia bowleyana HOM05D000032 ORTHO05D026110 1.5e-12 76.6 85 56.5
THA.LOC104807641 Tarenaya hassleriana HOM05D000032 ORTHO05D007443 1.5e-12 76.6 76 56.6
Aa31LG2G15620 Aethionema arabicum HOM05D000032 ORTHO05D007443 2.0e-12 76.3 95 48.4
Lsat_1_v5_gn_4_158421 Lactuca sativa HOM05D000032 ORTHO05D007443 2.6e-12 75.9 97 49.5
Aa31LG2G15600 Aethionema arabicum HOM05D000032 ORTHO05D007443 3.4e-12 75.5 95 48.4
ATR0739G078 Amborella trichopoda HOM05D000032 ORTHO05D007443 3.4e-12 75.5 99 53.5
A08p16490 Brassica napus HOM05D000032 ORTHO05D007443 3.4e-12 75.5 79 51.9
C03p85330 Brassica napus HOM05D000032 ORTHO05D007443 4.4e-12 75.1 89 49.4
BraA08t33617Z Brassica rapa HOM05D000032 ORTHO05D007443 4.4e-12 75.1 89 49.4
MSTRG.23651 Avicennia marina HOM05D000032 ORTHO05D007443 5.8e-12 74.7 94 51.1
A01p03610 Brassica napus HOM05D000032 ORTHO05D007443 9.9e-12 73.9 102 47.1
BraA01t00347Z Brassica rapa HOM05D000032 ORTHO05D007443 9.9e-12 73.9 102 47.1
arahy.Tifrunner.gnm1.ann1.11GZ1T Arachis hypogaea HOM05D000032 ORTHO05D007443 1.3e-11 73.6 91 56.0
Medtr1g083130 Medicago truncatula HOM05D000032 ORTHO05D007443 1.3e-11 73.6 91 53.8
arahy.Tifrunner.gnm1.ann1.MR2VJ3 Arachis hypogaea HOM05D000032 ORTHO05D007443 1.7e-11 73.2 91 56.0
arahy.Tifrunner.gnm1.ann1.318AHN Arachis hypogaea HOM05D000032 ORTHO05D007443 2.2e-11 72.8 68 63.2
CDE01G0309 Ceratophyllum demersum HOM05D000032 ORTHO05D007443 2.2e-11 72.8 92 48.9
DCAR_004695 Daucus carota HOM05D000032 ORTHO05D007443 2.9e-11 72.4 95 52.6
Psat6g149960 Pisum sativum HOM05D000032 ORTHO05D007443 2.9e-11 72.4 97 49.5
PSO541G1009 Papaver somniferum HOM05D000032 ORTHO05D007443 3.8e-11 72.0 95 49.5
BcaC01g00863 Brassica carinata HOM05D000032 ORTHO05D007443 4.9e-11 71.6 89 48.3
BolC3t20823H Brassica oleracea HOM05D000032 ORTHO05D007443 4.9e-11 71.6 89 48.3
PSO675G5622 Papaver somniferum HOM05D000032 ORTHO05D007443 6.4e-11 71.2 95 49.5
TPR.G6058 Trifolium pratense HOM05D000032 ORTHO05D007443 8.4e-11 70.9 87 52.9
CARHR243180 Cardamine hirsuta HOM05D000032 ORTHO05D007443 1.1e-10 70.5 99 44.4
Os03g0728800 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007443 1.1e-10 70.5 94 50.0
HPP92_011749 Vanilla planifolia HOM05D000032 ORTHO05D007443 1.1e-10 70.5 90 50.0
AT4G34910 Arabidopsis thaliana HOM05D000032 ORTHO05D007443 1.9e-10 69.7 99 44.4
HanXRQChr11g0323571 Helianthus annuus HOM05D000032 ORTHO05D007443 2.4e-10 69.3 91 50.5
Lj4C166T2 Lonicera japonica HOM05D000032 ORTHO05D007443 2.4e-10 69.3 97 50.5
Sp7g32660 Schrenkiella parvula HOM05D000032 ORTHO05D007443 2.4e-10 69.3 103 43.7
BcaB03g11802 Brassica carinata HOM05D000032 ORTHO05D007443 7.1e-10 67.8 102 42.2
Zm00001eb215620 Zea mays HOM05D000032 ORTHO05D007443 9.3e-10 67.4 94 46.8
Ca_10121_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007443 1.2e-09 67.0 90 50.0
Thhalv10024759m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 1.2e-09 67.0 71 50.7
BcaNung00645 Brassica carinata HOM05D000032 ORTHO05D007443 2.1e-09 66.2 102 45.1
BolC1t00383H Brassica oleracea HOM05D000032 ORTHO05D007443 2.1e-09 66.2 102 45.1
C01p03900 Brassica napus HOM05D000032 ORTHO05D007443 2.7e-09 65.9 73 50.7
CAN.G1167.3 Capsicum annuum HOM05D000032 ORTHO05D014358 4.6e-09 65.1 50 68.0
Lj5g0020960 Lotus japonicus HOM05D000032 ORTHO05D007443 4.6e-09 65.1 96 49.0
Carub.0007s0539 Capsella rubella HOM05D000032 ORTHO05D007443 1.0e-08 63.9 103 41.7
AL7G16320 Arabidopsis lyrata HOM05D000032 ORTHO05D007443 2.3e-08 62.8 96 42.7
CAN.G27.58 Capsicum annuum HOM05D000032 ORTHO05D014358 3.9e-08 62.0 77 51.9
CAN.G680.16 Capsicum annuum HOM05D000058 ORTHO05D014358 3.9e-08 62.0 46 69.6
Thhalv10013368m.g Eutrema salsugineum HOM05D000032 ORTHO05D007443 3.9e-08 62.0 103 40.8
Glyma.20G235400 Glycine max HOM05D000032 ORTHO05D007443 1.1e-07 60.5 39 76.9
SEGI_40001 Sequoiadendron giganteum HOM05D000032 ORTHO05D007443 1.1e-07 60.5 79 48.1
Mapoly0062s0065 Marchantia polymorpha HOM05D000032 ORTHO05D007443 1.3e-06 57.0 92 43.5
SHI12020 Sapria himalayana HOM05D000278 ORTHO05D007443 2.8e-06 55.8 73 49.3
RcHm_v2.0_Chr4g0429541 Rosa chinensis HOM05D000032 ORTHO05D026110 4.8e-06 55.1 23 100.0


User provided reference genes

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