Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0385181 Rosa chinensis HOM05D006931 ORTHO05D008782 4.2e-37 159.5 305 100.0
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 9.4e-29 131.7 64 96.9
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 4.8e-25 119.4 59 94.9
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 4.8e-25 119.4 59 94.9
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 5.3e-24 115.9 58 93.1
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 7.0e-24 115.5 57 94.7
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 1.2e-23 114.8 66 74.2
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 1.1e-21 108.2 67 74.6
Atru.chr1.3931 Acer truncatum HOM05D006931 ORTHO05D008782 4.2e-21 106.3 67 73.1
Gohir.A07G164200 Gossypium hirsutum HOM05D006931 ORTHO05D008782 9.4e-21 105.1 66 68.2
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 8.0e-20 102.1 67 62.7
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 8.0e-20 102.1 57 71.9
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 8.0e-20 102.1 57 71.9
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 5.2e-19 99.4 66 71.2
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 5.2e-19 99.4 66 71.2
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 5.2e-19 99.4 62 69.4
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 6.7e-19 99.0 59 72.9
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 3.3e-18 96.7 53 75.5
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 4.4e-18 96.3 67 62.7
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 2.2e-17 94.0 64 64.1
Dinv21282 Davidia involucrata HOM05D006931 ORTHO05D028388 4.8e-17 92.8 63 69.8
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 8.2e-17 92.0 57 70.2
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 1.8e-16 90.9 67 59.7
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 2.4e-16 90.5 64 62.5
Phvul.010G143400 Phaseolus vulgaris HOM05D006931 ORTHO05D008782 3.1e-16 90.1 66 62.1
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 3.1e-16 90.1 67 61.2
Zm00001eb027640 Zea mays HOM05D006931 ORTHO05D008782 3.1e-16 90.1 67 55.2
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 4.1e-16 89.7 56 67.9
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 4.1e-16 89.7 58 70.7
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 7.0e-16 89.0 47 83.0
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 7.0e-16 89.0 66 59.1
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 9.1e-16 88.6 47 83.0
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 9.1e-16 88.6 68 58.8
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 1.2e-15 88.2 45 84.4
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 2.7e-15 87.0 56 71.4
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 3.5e-15 86.7 48 79.2
Ca_23284_v3 Cicer arietinum L. HOM05D006931 ORTHO05D008782 3.5e-15 86.7 67 58.2
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 3.5e-15 86.7 50 76.0
Manes.05G013300 Manihot esculenta HOM05D006931 ORTHO05D015207 4.5e-15 86.3 46 80.4
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 5.9e-15 85.9 50 76.0
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 1.0e-14 85.1 42 90.5
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.2e-14 84.0 67 58.2
HPP92_013549 Vanilla planifolia HOM05D006931 ORTHO05D008782 2.2e-14 84.0 51 70.6
Manes.06G016000 Manihot esculenta HOM05D006931 ORTHO05D008782 6.5e-14 82.4 43 81.4
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 8.5e-14 82.0 42 85.7
Hma1.2p1_0253F.1_g103030 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.1e-13 81.6 67 55.2
Hma1.2p1_2484F.1_g323045 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.1e-13 81.6 67 55.2
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 3.2e-13 80.1 47 76.6
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 5.5e-13 79.3 46 73.9
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.6e-12 77.8 46 67.4
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 1.6e-12 77.8 42 81.0
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 2.1e-12 77.4 43 74.4
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 3.6e-12 76.6 44 75.0
Cfa014231 Carpinus fangiana HOM05D006931 ORTHO05D008782 4.7e-12 76.3 42 78.6
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 6.1e-12 75.9 42 78.6
SGA_v2.0_scaffold347G49544 Striga asiatica HOM05D006931 ORTHO05D008782 8.0e-12 75.5 46 67.4
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 1.4e-11 74.7 47 70.2
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 1.8e-11 74.3 42 73.8
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 2.3e-11 73.9 50 66.0
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.3e-11 73.9 42 76.2
THA.LOC104808862 Tarenaya hassleriana HOM05D006931 ORTHO05D008782 2.3e-11 73.9 43 76.7
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 3.0e-11 73.6 44 72.7
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.0e-11 73.6 51 60.8
Rhsim01G0200100 Rhododendron simsii HOM05D006931 ORTHO05D008782 6.8e-11 72.4 43 69.8
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 6.8e-11 72.4 41 78.0
Cfa014237 Carpinus fangiana HOM05D006931 ORTHO05D008782 8.8e-11 72.0 38 78.9
Lsat_1_v5_gn_2_33981 Lactuca sativa HOM05D001522 ORTHO05D008782 1.5e-10 71.2 48 62.5
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.5e-10 71.2 41 75.6
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.0e-10 70.9 42 73.8
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.0e-10 70.9 42 73.8
Oeu052201.2 Olea europaea HOM05D006931 ORTHO05D008782 2.6e-10 70.5 42 73.8
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 3.4e-10 70.1 42 71.4
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 4.4e-10 69.7 42 73.8
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 5.7e-10 69.3 42 71.4
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 5.7e-10 69.3 42 71.4
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 5.7e-10 69.3 42 71.4
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 5.7e-10 69.3 38 78.9
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 5.7e-10 69.3 42 73.8
Cfa014238 Carpinus fangiana HOM05D006931 ORTHO05D008782 9.8e-10 68.6 70 44.3
Migut.B01087 Erythranthe guttata HOM05D006931 ORTHO05D008782 9.8e-10 68.6 42 64.3
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 9.8e-10 68.6 42 69.0
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 1.3e-09 68.2 44 70.5
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 1.3e-09 68.2 42 71.4
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 1.7e-09 67.8 41 68.3
Nitab4.5_0001701g0020 Nicotiana tabacum HOM05D006931 ORTHO05D008782 2.2e-09 67.4 42 73.8
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 3.7e-09 66.6 42 73.8
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 3.7e-09 66.6 42 73.8
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 4.8e-09 66.2 42 64.3
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 4.8e-09 66.2 42 71.4
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 6.3e-09 65.9 42 69.0
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 6.3e-09 65.9 42 69.0
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 6.3e-09 65.9 42 69.0
CSS0005617 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 6.3e-09 65.9 41 70.7
PGR142G3220 Punica granatum HOM05D006931 ORTHO05D008782 6.3e-09 65.9 43 62.8
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 8.3e-09 65.5 42 71.4
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 1.1e-08 65.1 42 66.7
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 1.8e-08 64.3 42 71.4
CiPaw.03G280700 Carya illinoinensis HOM05D006931 ORTHO05D008782 1.8e-08 64.3 33 78.8
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 1.8e-08 64.3 42 69.0
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 2.4e-08 63.9 37 73.0
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 2.4e-08 63.9 37 78.4
Cfa014232 Carpinus fangiana HOM05D006931 ORTHO05D008782 4.1e-08 63.2 42 69.0
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 5.4e-08 62.8 64 43.8
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 7.0e-08 62.4 39 64.1
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 9.1e-08 62.0 41 68.3
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.2e-07 61.6 64 42.2
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 3.5e-07 60.1 64 43.8
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.5e-07 60.1 61 44.3
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 4.5e-07 59.7 66 43.9
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 5.9e-07 59.3 65 46.2
Lalb_Chr03g0043751 Lupinus albus HOM05D006931 ORTHO05D008782 5.9e-07 59.3 40 65.0
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 7.7e-07 58.9 64 42.2
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 7.7e-07 58.9 65 46.2
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 7.7e-07 58.9 65 46.2
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 7.7e-07 58.9 67 41.8
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 7.7e-07 58.9 66 43.9
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 1.3e-06 58.2 65 47.7
AUR62015178 Chenopodium quinoa HOM05D006931 ORTHO05D008782 1.7e-06 57.8 37 67.6
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.7e-06 57.8 35 62.9
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.7e-06 57.8 35 62.9
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 2.3e-06 57.4 37 64.9
AUR62017857 Chenopodium quinoa HOM05D006931 ORTHO05D008782 2.3e-06 57.4 37 64.9
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.3e-06 57.4 65 44.6
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.9e-06 57.0 66 40.9
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 3.8e-06 56.6 64 42.2
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 3.8e-06 56.6 64 42.2
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 3.8e-06 56.6 64 42.2
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 6.5e-06 55.8 66 40.9
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 6.5e-06 55.8 66 39.4


User provided reference genes

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