Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496491 Rosa chinensis HOM05D001125 ORTHO05D031496 7.8e-52 206.8 103 100.0
RcHm_v2.0_Chr2g0127601 Rosa chinensis HOM05D001125 ORTHO05D003189 4.2e-21 104.8 59 84.7
RcHm_v2.0_Chr6g0274301 Rosa chinensis HOM05D001125 ORTHO05D031496 5.3e-16 87.8 83 62.7
FAN02G2881 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.7e-12 75.5 65 58.5
FAN02G4535 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.7e-12 75.5 65 58.5
FvH4_6g26550 Fragaria vesca HOM05D001125 ORTHO05D003189 3.5e-12 75.1 65 58.5
FAN05G4313 Fragaria x ananassa HOM05D001125 ORTHO05D003189 3.5e-12 75.1 65 58.5
FAN09G1980 Fragaria x ananassa HOM05D001125 ORTHO05D003189 3.5e-12 75.1 65 58.5
CiPaw.03G179800 Carya illinoinensis HOM05D001125 ORTHO05D003189 2.5e-10 68.9 59 62.7
MD09G1243900 Malus domestica HOM05D001125 ORTHO05D003189 3.3e-10 68.6 57 57.9
MD17G1235800 Malus domestica HOM05D001125 ORTHO05D003189 5.6e-10 67.8 54 57.4
CANSAT64G2845 Cannabis sativa HOM05D001125 ORTHO05D003189 1.3e-09 66.6 54 57.4
Ciclev10014346m.g Citrus clementina HOM05D001125 ORTHO05D003189 1.6e-09 66.2 54 57.4
Atru.chr6.2891 Acer truncatum HOM05D001125 ORTHO05D003189 8.1e-09 63.9 54 55.6
Haze_13207 Corylus avellana HOM05D001125 ORTHO05D003189 8.1e-09 63.9 59 57.6
Sed0012231 Sechium edule HOM05D001125 ORTHO05D003189 8.1e-09 63.9 47 61.7
MELO3C018707.2 Cucumis melo HOM05D001125 ORTHO05D003189 1.1e-08 63.5 51 54.9
CsaV3_7G005850 Cucumis sativus L. HOM05D001125 ORTHO05D003189 1.1e-08 63.5 51 54.9
Sabra07G0111700 Salix brachista HOM05D001125 ORTHO05D003189 1.1e-08 63.5 56 51.8
Solyc07g053790.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 1.1e-08 63.5 44 65.9
arahy.Tifrunner.gnm1.ann1.CC6EIW Arachis hypogaea HOM05D001125 ORTHO05D003189 1.4e-08 63.2 46 63.0
CSS0025160 Camellia sinensis var. sinensis HOM05D001125 ORTHO05D003189 1.4e-08 63.2 48 62.5
Prupe.3G140300 Prunus persica HOM05D001125 ORTHO05D003189 1.4e-08 63.2 49 63.3
Sopen07g027760 Solanum pennellii HOM05D001125 ORTHO05D003189 1.4e-08 63.2 59 55.9
arahy.Tifrunner.gnm1.ann1.48RFXK Arachis hypogaea HOM05D001125 ORTHO05D003189 1.8e-08 62.8 48 60.4
Duzib052G0690 Durio zibethinus HOM05D001125 ORTHO05D003189 1.8e-08 62.8 49 55.1
Potri.017G013100 Populus trichocarpa HOM05D001125 ORTHO05D003189 1.8e-08 62.8 56 53.6
Sabra17G0010600 Salix brachista HOM05D001125 ORTHO05D003189 1.8e-08 62.8 56 51.8
QL08p039736 Quercus lobata HOM05D001125 ORTHO05D003189 2.4e-08 62.4 59 52.5
AUR62038884 Chenopodium quinoa HOM05D001125 ORTHO05D003189 3.1e-08 62.0 49 61.2
Gohir.A03G155500 Gossypium hirsutum HOM05D001125 ORTHO05D003189 5.3e-08 61.2 49 57.1
Gorai.005G200300 Gossypium raimondii HOM05D001125 ORTHO05D003189 5.3e-08 61.2 49 57.1
Lj1C712T4 Lonicera japonica HOM05D001125 ORTHO05D003189 5.3e-08 61.2 56 55.4
Sed0000582 Sechium edule HOM05D001125 ORTHO05D003189 5.3e-08 61.2 56 57.1
Lj3g0021800 Lotus japonicus HOM05D001125 ORTHO05D003189 6.9e-08 60.8 43 65.1
Potri.007G138600 Populus trichocarpa HOM05D001125 ORTHO05D003189 6.9e-08 60.8 44 54.5
Hund07885 Selenicereus undatus HOM05D001125 ORTHO05D003189 6.9e-08 60.8 59 50.8
Hma1.2p1_0002F.1_g002120 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 9.0e-08 60.5 46 56.5
Sabra15G0065200 Salix brachista HOM05D001125 ORTHO05D003189 9.0e-08 60.5 47 51.1
Eucgr.A01835 Eucalyptus grandis HOM05D001125 ORTHO05D003189 1.2e-07 60.1 48 60.4
Dinv04810 Davidia involucrata HOM05D001125 ORTHO05D003189 1.5e-07 59.7 46 60.9
Lalb_Chr03g0029561 Lupinus albus HOM05D001125 ORTHO05D003189 1.5e-07 59.7 42 61.9
PGR042G1351 Punica granatum HOM05D001125 ORTHO05D003189 1.5e-07 59.7 52 57.7
AUR62038976 Chenopodium quinoa HOM05D001125 ORTHO05D003189 2.0e-07 59.3 49 57.1
ClCG07G002500 Citrullus lanatus HOM05D001125 ORTHO05D003189 2.0e-07 59.3 49 55.1
SGA_v2.0_scaffold70G23508 Striga asiatica HOM05D001125 ORTHO05D003189 2.6e-07 58.9 56 51.8
Ah.01g004100 Amaranthus hybridus HOM05D001125 ORTHO05D003189 3.4e-07 58.5 45 60.0
arahy.Tifrunner.gnm1.ann1.NJX80N Arachis hypogaea HOM05D001125 ORTHO05D003189 3.4e-07 58.5 48 54.2
arahy.Tifrunner.gnm1.ann1.081SLL Arachis hypogaea HOM05D001125 ORTHO05D003189 4.5e-07 58.2 48 54.2
arahy.Tifrunner.gnm1.ann1.FQ043B Arachis hypogaea HOM05D001125 ORTHO05D031496 5.8e-07 57.8 40 62.5
Peaxi162Scf00008g00612 Petunia axillaris HOM05D001125 ORTHO05D003189 5.8e-07 57.8 46 54.3
Thecc.02G183400 Theobroma cacao HOM05D001125 ORTHO05D003189 5.8e-07 57.8 46 56.5
TWI14G1126 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 5.8e-07 57.8 43 60.5
MSTRG.14940 Avicennia marina HOM05D001125 ORTHO05D003189 7.6e-07 57.4 51 51.0
Cc05_g07520 Coffea canephora HOM05D001125 ORTHO05D003189 7.6e-07 57.4 54 48.1
Duzib132G1183 Durio zibethinus HOM05D001125 ORTHO05D003189 7.6e-07 57.4 49 53.1
MBI02_g32401_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D003189 7.6e-07 57.4 50 56.0
Manes.13G144200 Manihot esculenta HOM05D001125 ORTHO05D003189 7.6e-07 57.4 44 61.4
TWI23G1275 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 7.6e-07 57.4 55 54.5
VMungo1127G0389 Vigna mungo HOM05D001125 ORTHO05D003189 7.6e-07 57.4 55 54.5
Glyma.12G116700 Glycine max HOM05D001125 ORTHO05D003189 9.9e-07 57.0 42 59.5
TAR627G0354 Trochodendron aralioides HOM05D001125 ORTHO05D003189 9.9e-07 57.0 42 61.9
TAR627G0421 Trochodendron aralioides HOM05D001125 ORTHO05D003189 9.9e-07 57.0 42 61.9
CARHR003110 Cardamine hirsuta HOM05D001125 ORTHO05D003189 1.3e-06 56.6 57 54.4
Gorai.002G019900 Gossypium raimondii HOM05D001125 ORTHO05D003189 1.3e-06 56.6 54 50.0
SGA_v2.0_scaffold34G13940 Striga asiatica HOM05D001125 ORTHO05D003189 1.3e-06 56.6 56 50.0
Aa31LG1G8990 Aethionema arabicum HOM05D001125 ORTHO05D003189 1.7e-06 56.2 55 54.5
Dinv06876 Davidia involucrata HOM05D001125 ORTHO05D003189 1.7e-06 56.2 46 56.5
Nn1g04165 Nelumbo nucifera HOM05D001125 ORTHO05D003189 1.7e-06 56.2 42 59.5
Gohir.D01G017600 Gossypium hirsutum HOM05D001125 ORTHO05D003189 2.2e-06 55.8 50 50.0
unitig_46.g18245 Utricularia gibba HOM05D001125 ORTHO05D003189 2.2e-06 55.8 54 48.1
A10p02320 Brassica napus HOM05D001125 ORTHO05D003189 2.9e-06 55.5 60 48.3
Thhalv10006864m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 2.9e-06 55.5 57 49.1
Medtr4g078565 Medicago truncatula HOM05D001125 ORTHO05D003189 2.9e-06 55.5 49 53.1
vmacro12331 Vaccinium macrocarpon HOM05D001125 ORTHO05D003189 2.9e-06 55.5 50 56.0
Actinidia11095 Actinidia chinensis HOM05D001125 ORTHO05D003189 3.8e-06 55.1 73 43.8
Carub.0001s0288 Capsella rubella HOM05D001125 ORTHO05D003189 3.8e-06 55.1 58 51.7
Sc21g0003100 Simmondsia chinensis HOM05D001125 ORTHO05D003189 3.8e-06 55.1 45 55.6
AT1G03780 Arabidopsis thaliana HOM05D001125 ORTHO05D003189 4.9e-06 54.7 60 48.3
CAN.G209.29 Capsicum annuum HOM05D001125 ORTHO05D003189 4.9e-06 54.7 46 54.3
Peaxi162Scf00981g00045 Petunia axillaris HOM05D001125 ORTHO05D003189 4.9e-06 54.7 59 44.1
AL1G13330 Arabidopsis lyrata HOM05D001125 ORTHO05D003189 6.4e-06 54.3 60 48.3
Cpa.g.sc83.73 Carica papaya HOM05D001125 ORTHO05D003189 6.4e-06 54.3 59 47.5
Glyma.06G290300 Glycine max HOM05D001125 ORTHO05D003189 6.4e-06 54.3 59 45.8
Rhsim04G0070200 Rhododendron simsii HOM05D001125 ORTHO05D003189 6.4e-06 54.3 40 60.0
ATR0752G128 Amborella trichopoda HOM05D001125 ORTHO05D003189 8.4e-06 53.9 46 52.2
BcaC05g24510 Brassica carinata HOM05D001125 ORTHO05D003189 8.4e-06 53.9 60 46.7
C05p02130 Brassica napus HOM05D001125 ORTHO05D003189 8.4e-06 53.9 60 46.7
BolC5t28990H Brassica oleracea HOM05D001125 ORTHO05D003189 8.4e-06 53.9 60 46.7
Gohir.A01G019000 Gossypium hirsutum HOM05D001125 ORTHO05D003189 8.4e-06 53.9 50 50.0
Sp2g09090 Schrenkiella parvula HOM05D001125 ORTHO05D003189 8.4e-06 53.9 56 46.4


User provided reference genes

Program Settings