Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001125', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001125' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001125' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001125' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001125' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001125', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001125' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001125' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001125' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001125' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001125', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001125' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001125' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001125' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001125' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001125', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001125' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001125', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '548', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' ) ), 'genes' => array( 'A03p53830' => 'bna', 'A06p28960' => 'bna', 'A06p47330' => 'bna', 'A08p16000' => 'bna', 'A09p07580' => 'bna', 'A09p27160' => 'bna', 'A09p68210' => 'bna', 'A10p02320' => 'bna', 'Aa31LG11G1360' => 'aar', 'Aa31LG1G8990' => 'aar', 'Aa31LG3G19180' => 'aar', 'Aa31LG5G2980' => 'aar', 'Aa31LG6G4940' => 'aar', 'Aa31LG9G10480' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1028' => 'aag', 'Actinidia02067' => 'ach', 'Actinidia11095' => 'ach', 'Actinidia13548' => 'ach', 'Actinidia14489' => 'ach', 'Actinidia15073' => 'ach', 'Actinidia25045' => 'ach', 'Actinidia25919' => 'ach', 'Ah.01g004100' => 'amhyb', 'Ah.12g053490' => 'amhyb', 'Ah.12g057980' => 'amhyb', 'AL1G13330' => 'aly', 'AL6G17370' => 'aly', 'AL6G17390' => 'aly', 'AL6G46770' => 'aly', 'AL7G30650' => 'aly', 'AL8G15730' => 'aly', 'AL8G39060' => 'aly', 'Aqoxy1G02346' => 'aox', 'Aqoxy6G01504' => 'aox', 'Aqoxy7G00577' => 'aox', 'arahy.Tifrunner.gnm1.ann1.081SLL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48RFXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4UTI2R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5GN3MJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9N64NI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUYI9Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0QUTF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2CMKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2R8YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CC6EIW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ043B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JV155Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ND3LXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJX80N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYNT2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM50GR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2X777' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ13I3' => 'arhy', 'AT1G03780' => 'ath', 'AT4G11990' => 'ath', 'AT4G22860' => 'ath', 'AT5G07170' => 'ath', 'AT5G44270' => 'ath', 'AT5G62240' => 'ath', 'ATR0752G128' => 'atr', 'ATR0757G023' => 'atr', 'Atru.chr1.617' => 'acertr', 'Atru.chr6.2891' => 'acertr', 'Atru.chr9.1478' => 'acertr', 'Atru.chr9.1479' => 'acertr', 'AUR62010541' => 'cqu', 'AUR62016089' => 'cqu', 'AUR62017354' => 'cqu', 'AUR62035036' => 'cqu', 'AUR62038884' => 'cqu', 'AUR62038976' => 'cqu', 'BcaB01g01696' => 'bca', 'BcaB03g11746' => 'bca', 'BcaB08g37326' => 'bca', 'BcaC01g00799' => 'bca', 'BcaC01g06925' => 'bca', 'BcaC04g21183' => 'bca', 'BcaC05g24510' => 'bca', 'BcaC06g31636' => 'bca', 'BcaC06g34577' => 'bca', 'BcaC07g42227' => 'bca', 'BcaC09g51067' => 'bca', 'BcaNung01405' => 'bca', 'BcaNung01666' => 'bca', 'BcaNung06081' => 'bca', 'BcaNung06808' => 'bca', 'BcaNung06826' => 'bca', 'BolC1t01671H' => 'bol', 'BolC3t12893H' => 'bol', 'BolC3t18721H' => 'bol', 'BolC3t20734H' => 'bol', 'BolC5t28990H' => 'bol', 'BolC7t43222H' => 'bol', 'BolC7t45717H' => 'bol', 'BolC8t52791H' => 'bol', 'BolC9t53758H' => 'bol', 'BraA03t14452Z' => 'bra', 'BraA06t25841Z' => 'bra', 'BraA06t27604Z' => 'bra', 'BraA08t33572Z' => 'bra', 'BraA09t36412Z' => 'bra', 'BraA09t38285Z' => 'bra', 'BraA09t42156Z' => 'bra', 'BraA10t42499Z' => 'bra', 'C03p64630' => 'bna', 'C03p84430' => 'bna', 'C05p02130' => 'bna', 'C07p26940' => 'bna', 'C07p52230' => 'bna', 'C08p52650' => 'bna', 'C09p08500' => 'bna', 'CAN.G1110.1' => 'can', 'CAN.G11130.1' => 'can', 'CAN.G12712.1' => 'can', 'CAN.G1337.21' => 'can', 'CAN.G1509.1' => 'can', 'CAN.G16044.1' => 'can', 'CAN.G1762.1' => 'can', 'CAN.G1874.1' => 'can', 'CAN.G1874.2' => 'can', 'CAN.G1972.1' => 'can', 'CAN.G2022.1' => 'can', 'CAN.G209.29' => 'can', 'CAN.G397.44' => 'can', 'CAN.G397.59' => 'can', 'CAN.G397.60' => 'can', 'CAN.G492.1' => 'can', 'CAN.G532.80' => 'can', 'CAN.G630.29' => 'can', 'CAN.G7551.1' => 'can', 'CAN.G8954.1' => 'can', 'CAN.G916.11' => 'can', 'CAN.G988.4' => 'can', 'CANSAT21G0436' => 'cansat', 'CANSAT21G1034' => 'cansat', 'CANSAT21G2583' => 'cansat', 'CANSAT64G2845' => 'cansat', 'CARHR003110' => 'chi', 'CARHR036420' => 'chi', 'CARHR178930' => 'chi', 'CARHR205980' => 'chi', 'CARHR229900' => 'chi', 'CARHR254300' => 'chi', 'CARHR276020' => 'chi', 'Carub.0001s0288' => 'cru', 'Carub.0006s0610' => 'cru', 'Carub.0006s1404' => 'cru', 'Carub.0006s3109' => 'cru', 'Carub.0007s1841' => 'cru', 'Carub.0008s2293' => 'cru', 'Ca_06676_v3' => 'car', 'Ca_12290_v3' => 'car', 'Ca_12291_v3' => 'car', 'Ca_18932_v3' => 'car', 'Ca_19525_v3' => 'car', 'CBR_g36575' => 'cbr', 'CBR_g55011' => 'cbr', 'Cc02_g03820' => 'ccan', 'Cc05_g07520' => 'ccan', 'Cc08_g13550' => 'ccan', 'CDE02G1272' => 'cde', 'CDE02G1458' => 'cde', 'CDE06G0597' => 'cde', 'CDE06G2158' => 'cde', 'Cfa012047' => 'cfa', 'Ciclev10006545m.g' => 'ccl', 'Ciclev10014346m.g' => 'ccl', 'Ciclev10019738m.g' => 'ccl', 'CiPaw.03G097600' => 'cil', 'CiPaw.03G179800' => 'cil', 'CiPaw.04G063800' => 'cil', 'CiPaw.11G144700' => 'cil', 'CiPaw.12G102600' => 'cil', 'ClCG00G000090' => 'cla', 'ClCG00G004050' => 'cla', 'ClCG00G004640' => 'cla', 'ClCG07G002500' => 'cla', 'ClCG09G013280' => 'cla', 'ClCG09G013290' => 'cla', 'ClCG10G003340' => 'cla', 'COL.COLO4_05959' => 'col', 'COL.COLO4_14193' => 'col', 'COL.COLO4_23829' => 'col', 'Cpa.g.sc29.55' => 'cpa', 'Cpa.g.sc3.260' => 'cpa', 'Cpa.g.sc83.73' => 'cpa', 'Cre11.g482850' => 'cre', 'CsaV3_3G003370' => 'csa', 'CsaV3_7G005850' => 'csa', 'CsaV3_7G022240' => 'csa', 'CsaV3_7G022250' => 'csa', 'CSS0018881' => 'camsi', 'CSS0025160' => 'camsi', 'CSS0040986' => 'camsi', 'DCAR_000881' => 'dca', 'DCAR_006789' => 'dca', 'DCAR_014608' => 'dca', 'DCAR_021255' => 'dca', 'Dinv04810' => 'din', 'Dinv06876' => 'din', 'Dinv28527' => 'din', 'Dinv39051' => 'din', 'Duzib052G0690' => 'dzi', 'Duzib068G0705' => 'dzi', 'Duzib084G0489' => 'dzi', 'Duzib084G0880' => 'dzi', 'Duzib132G1183' => 'dzi', 'Duzib205G1057' => 'dzi', 'ECA232G2582' => 'eca', 'ECA233G3717' => 'eca', 'ECA233G5424' => 'eca', 'ECA233G5841' => 'eca', 'ECA246G3928' => 'eca', 'EL10Ac3g05778' => 'bvu', 'EL10Ac5g12661' => 'bvu', 'Eucgr.A01835' => 'egr', 'Eucgr.E00497' => 'egr', 'Eucgr.K00140' => 'egr', 'FAN01G0262' => 'fan', 'FAN01G0795' => 'fan', 'FAN02G2881' => 'fan', 'FAN02G4535' => 'fan', 'FAN03G2870' => 'fan', 'FAN04G2268' => 'fan', 'FAN05G1855' => 'fan', 'FAN05G4313' => 'fan', 'FAN06G2148' => 'fan', 'FAN06G3875' => 'fan', 'FAN06G4532' => 'fan', 'FAN08G1243' => 'fan', 'FAN09G1980' => 'fan', 'FAN09G2333' => 'fan', 'FAN10G0044' => 'fan', 'FAN10G2023' => 'fan', 'FAN10G3624' => 'fan', 'FAN11G0259' => 'fan', 'FAN13G0963' => 'fan', 'FAN14G4163' => 'fan', 'FAN17G1093' => 'fan', 'FAN18G1422' => 'fan', 'FAN18G1602' => 'fan', 'FAN18G1756' => 'fan', 'FAN18G2268' => 'fan', 'FAN18G2829' => 'fan', 'FAN18G4467' => 'fan', 'FAN20G0613' => 'fan', 'FAN23G2895' => 'fan', 'FAN24G1048' => 'fan', 'FAN24G2829' => 'fan', 'FvH4_2g12101' => 'fve', 'FvH4_5g00990' => 'fve', 'FvH4_5g28361' => 'fve', 'FvH4_5g28370' => 'fve', 'FvH4_5g28401' => 'fve', 'FvH4_5g28402' => 'fve', 'FvH4_5g28440' => 'fve', 'FvH4_5g28450' => 'fve', 'FvH4_5g28471' => 'fve', 'FvH4_5g28480' => 'fve', 'FvH4_5g28561' => 'fve', 'FvH4_6g25610' => 'fve', 'FvH4_6g25690' => 'fve', 'FvH4_6g25731' => 'fve', 'FvH4_6g26550' => 'fve', 'FvH4_7g28280' => 'fve', 'FvH4_c15g00040' => 'fve', 'FvH4_c17g00020' => 'fve', 'FvH4_c17g00070' => 'fve', 'FvH4_c17g00090' => 'fve', 'Glyma.01G213800' => 'gma', 'Glyma.05G054600' => 'gma', 'Glyma.06G290300' => 'gma', 'Glyma.09G152500' => 'gma', 'Glyma.11G028100' => 'gma', 'Glyma.12G116700' => 'gma', 'Glyma.17G137100' => 'gma', 'Gohir.A01G019000' => 'ghi', 'Gohir.A03G012700' => 'ghi', 'Gohir.A03G155500' => 'ghi', 'Gohir.A09G178500' => 'ghi', 'Gohir.A12G222900' => 'ghi', 'Gohir.D01G017600' => 'ghi', 'Gohir.D02G178600' => 'ghi', 'Gohir.D03G156800' => 'ghi', 'Gohir.D09G174100' => 'ghi', 'Gohir.D12G225500' => 'ghi', 'Gorai.002G019900' => 'gra', 'Gorai.003G164700' => 'gra', 'Gorai.005G200300' => 'gra', 'Gorai.006G196100' => 'gra', 'Gorai.008G241500' => 'gra', 'GSVIVG01018492001' => 'vvi', 'GSVIVG01019918001' => 'vvi', 'GSVIVG01020580001' => 'vvi', 'HanXRQChr02g0047681' => 'han', 'HanXRQChr09g0246771' => 'han', 'HanXRQChr15g0486131' => 'han', 'HanXRQChr15g0491941' => 'han', 'HanXRQChr17g0554381' => 'han', 'HanXRQChr17g0559321' => 'han', 'Haze_09018' => 'cav', 'Haze_09020' => 'cav', 'Haze_13207' => 'cav', 'Haze_13818' => 'cav', 'Hma1.2p1_0002F.1_g002120' => 'hma', 'Hma1.2p1_0002F.1_g003060' => 'hma', 'Hma1.2p1_0074F.1_g038640' => 'hma', 'Hma1.2p1_0225F.1_g094990' => 'hma', 'Hma1.2p1_0255F.1_g103240' => 'hma', 'Hma1.2p1_0488F.1_g163980' => 'hma', 'Hma1.2p1_0635F.1_g193150' => 'hma', 'Hma1.2p1_0766F.1_g215230' => 'hma', 'Hma1.2p1_1486F.1_g286545' => 'hma', 'Hma1.2p1_2181F.1_g316280' => 'hma', 'HPP92_012417' => 'vpl', 'HPP92_014188' => 'vpl', 'HPP92_028032' => 'vpl', 'Hund04655' => 'sun', 'Hund07598' => 'sun', 'Hund07885' => 'sun', 'Hund11552' => 'sun', 'Lalb_Chr03g0029561' => 'lal', 'Lalb_Chr03g0033041' => 'lal', 'Lalb_Chr05g0225241' => 'lal', 'Lalb_Chr09g0324631' => 'lal', 'Lalb_Chr09g0324641' => 'lal', 'Lalb_Chr16g0379901' => 'lal', 'Lalb_Chr19g0131271' => 'lal', 'Lj1A985G30' => 'lonja', 'Lj1C712T4' => 'lonja', 'Lj2A203T57' => 'lonja', 'Lj2g0008063' => 'lja', 'Lj2g0012128' => 'lja', 'Lj3g0021800' => 'lja', 'Lj4g0017986' => 'lja', 'Lj8A252T38' => 'lonja', 'Lj8A253T48' => 'lonja', 'Lsat_1_v5_gn_1_1841' => 'lsa', 'Lsat_1_v5_gn_3_38720' => 'lsa', 'Lsat_1_v5_gn_6_49300' => 'lsa', 'Lsat_1_v5_gn_6_8301' => 'lsa', 'Lsat_1_v5_gn_8_134661' => 'lsa', 'Lsat_1_v5_gn_8_8021' => 'lsa', 'Lsat_1_v5_gn_9_52760' => 'lsa', 'Manes.02G029775' => 'mes', 'Manes.06G138800' => 'mes', 'Manes.13G144200' => 'mes', 'Manes.13G145917' => 'mes', 'Manes.14G032400' => 'mes', 'Mapoly0016s0083' => 'mpo', 'MBI02_g32401_MAGBIO' => 'mbi', 'MBI04_g46549_MAGBIO' => 'mbi', 'MBI07_g03521_MAGBIO' => 'mbi', 'MBI12_g34483_MAGBIO' => 'mbi', 'MBI16_g09477_MAGBIO' => 'mbi', 'MBI19_g02722_MAGBIO' => 'mbi', 'MBI19_g21661_MAGBIO' => 'mbi', 'MD01G1187200' => 'mdo', 'MD04G1076100' => 'mdo', 'MD06G1068100' => 'mdo', 'MD07G1259000' => 'mdo', 'MD07G1259100' => 'mdo', 'MD07G1259400' => 'mdo', 'MD09G1243900' => 'mdo', 'MD17G1235800' => 'mdo', 'Medtr1g051075' => 'mtr', 'Medtr2g035900' => 'mtr', 'Medtr2g038240' => 'mtr', 'Medtr2g088210' => 'mtr', 'Medtr4g078565' => 'mtr', 'Medtr4g101890' => 'mtr', 'Medtr5g011390' => 'mtr', 'Medtr5g459310' => 'mtr', 'Medtr6g463310' => 'mtr', 'Medtr8g067260' => 'mtr', 'MELO3C012686.2' => 'cme', 'MELO3C012688.2' => 'cme', 'MELO3C014003.2' => 'cme', 'MELO3C018707.2' => 'cme', 'Migut.A00877' => 'egut', 'Migut.E01015' => 'egut', 'Migut.F00420' => 'egut', 'Migut.M00163' => 'egut', 'MSTRG.14940' => 'ama', 'MSTRG.17721' => 'ama', 'MSTRG.1918' => 'ama', 'MSTRG.6668' => 'ama', 'Nitab4.5_0000072g0260' => 'nta', 'Nitab4.5_0001341g0070' => 'nta', 'Nitab4.5_0002350g0080' => 'nta', 'Nitab4.5_0003121g0020' => 'nta', 'Nitab4.5_0004221g0030' => 'nta', 'Nitab4.5_0004959g0070' => 'nta', 'Nitab4.5_0005167g0110' => 'nta', 'Nitab4.5_0006721g0030' => 'nta', 'Nitab4.5_0008637g0030' => 'nta', 'Nitab4.5_0011687g0020' => 'nta', 'Nn1g01181' => 'nnu', 'Nn1g04165' => 'nnu', 'Nn1g06463' => 'nnu', 'Nn4g26443' => 'nnu', 'Oeu022402.1' => 'oeu', 'Oeu036072.3' => 'oeu', 'Oeu040246.1' => 'oeu', 'Oeu044723.1' => 'oeu', 'Os02g0326500' => 'osa', 'Os06g0130200' => 'osa', 'Os07g0507200' => 'osa', 'Peaxi162Scf00008g00612' => 'pax', 'Peaxi162Scf00192g00921' => 'pax', 'Peaxi162Scf00620g00235' => 'pax', 'Peaxi162Scf00981g00045' => 'pax', 'PGR042G1351' => 'pgr', 'PGR042G3061' => 'pgr', 'PGR142G3429' => 'pgr', 'PGSC0003DMG400003944' => 'stu', 'PGSC0003DMG400013743' => 'stu', 'PGSC0003DMG400021859' => 'stu', 'PGSC0003DMG400032826' => 'stu', 'PGSC0003DMG401027957' => 'stu', 'Phvul.002G152300' => 'pvu', 'Phvul.003G216700' => 'pvu', 'Phvul.004G126200' => 'pvu', 'Phvul.011G125500' => 'pvu', 'Potri.001G114400' => 'ptr', 'Potri.003G117800' => 'ptr', 'Potri.007G138600' => 'ptr', 'Potri.012G130300' => 'ptr', 'Potri.017G013100' => 'ptr', 'Pp3c17_11160' => 'ppa', 'Pp3c1_25950' => 'ppa', 'Pp3c23_4540' => 'ppa', 'Pp3c24_8590' => 'ppa', 'Prupe.2G283500' => 'ppe', 'Prupe.3G140300' => 'ppe', 'Prupe.5G083700' => 'ppe', 'Psat0s3446g0040' => 'psa', 'Psat1g109880' => 'psa', 'Psat2g014120' => 'psa', 'Psat2g180680' => 'psa', 'Psat4g069600' => 'psa', 'PSO478G5216' => 'pso', 'PSO541G3419' => 'pso', 'PSO675G6510' => 'pso', 'PSO782G0579' => 'pso', 'QL08p039736' => 'qlo', 'QL12p015862' => 'qlo', 'QL12p039410' => 'qlo', 'RcHm_v2.0_Chr1g0375251' => 'rch', 'RcHm_v2.0_Chr2g0120361' => 'rch', 'RcHm_v2.0_Chr2g0127601' => 'rch', 'RcHm_v2.0_Chr3g0465611' => 'rch', 'RcHm_v2.0_Chr3g0496491' => 'rch', 'RcHm_v2.0_Chr6g0274301' => 'rch', 'RcHm_v2.0_Chr7g0200391' => 'rch', 'Rhsim03G0172400' => 'rsi', 'Rhsim04G0070200' => 'rsi', 'Rhsim06G0138900' => 'rsi', 'Sabra01G0087500' => 'sbr', 'Sabra03G0082000' => 'sbr', 'Sabra07G0111700' => 'sbr', 'Sabra15G0065200' => 'sbr', 'Sabra17G0010600' => 'sbr', 'SalBow6G6785' => 'sbo', 'SalBow7G0071' => 'sbo', 'SalBow7G3984' => 'sbo', 'Sc01g0009040' => 'sci', 'Sc21g0003100' => 'sci', 'Sc25g0000150' => 'sci', 'Sed0000582' => 'sed', 'Sed0006610' => 'sed', 'Sed0012231' => 'sed', 'Sed0016423' => 'sed', 'SEGI_17688' => 'sgi', 'SEGI_29352' => 'sgi', 'SEGI_37855' => 'sgi', 'SGA_v2.0_scaffold257G45700' => 'sas', 'SGA_v2.0_scaffold34G13940' => 'sas', 'SGA_v2.0_scaffold37G14861' => 'sas', 'SGA_v2.0_scaffold70G23508' => 'sas', 'SHI10381' => 'shi', 'SHI10382' => 'shi', 'SMO165G0126' => 'smo', 'Solyc03g007060.3' => 'sly', 'Solyc06g035440.3' => 'sly', 'Solyc07g053790.2' => 'sly', 'Solyc08g079760.4' => 'sly', 'Solyc10g008210.3' => 'sly', 'Solyc12g005480.2' => 'sly', 'Sopen03g003050' => 'spe', 'Sopen06g011200' => 'spe', 'Sopen07g027760' => 'spe', 'Sopen08g028120' => 'spe', 'Sopen10g004070' => 'spe', 'Sopen12g001480' => 'spe', 'Sopen12g014260' => 'spe', 'Sp1g02640' => 'spa', 'Sp2g09090' => 'spa', 'Sp2g25440' => 'spa', 'Sp6g05520' => 'spa', 'Sp6g35740' => 'spa', 'Sp7g20940' => 'spa', 'TAR374G0787' => 'tar', 'TAR375G0684' => 'tar', 'TAR626G1554' => 'tar', 'TAR627G0354' => 'tar', 'TAR627G0421' => 'tar', 'TAR629G1613' => 'tar', 'TAR629G2008' => 'tar', 'TAR629G3223' => 'tar', 'THA.LOC104801165' => 'tha', 'THA.LOC104806354' => 'tha', 'THA.LOC104813006' => 'tha', 'THA.LOC104821394' => 'tha', 'Thecc.02G183400' => 'tca', 'Thecc.03G163000' => 'tca', 'Thecc.03G265100' => 'tca', 'Thhalv10003404m.g' => 'esa', 'Thhalv10004390m.g' => 'esa', 'Thhalv10006864m.g' => 'esa', 'Thhalv10015847m.g' => 'esa', 'Thhalv10024955m.g' => 'esa', 'Thhalv10029375m.g' => 'esa', 'TPR.G19589' => 'tpr', 'TPR.G25307' => 'tpr', 'TPR.G31026' => 'tpr', 'TPR.G37583' => 'tpr', 'TWI14G1126' => 'twi', 'TWI14G1390' => 'twi', 'TWI23G1275' => 'twi', 'TWI39G0763' => 'twi', 'TWI60G1296' => 'twi', 'TWI81G0472' => 'twi', 'unitig_26.g9686' => 'ugi', 'unitig_37.g11938' => 'ugi', 'unitig_37.g12878' => 'ugi', 'unitig_37.g12879' => 'ugi', 'unitig_46.g18245' => 'ugi', 'unitig_749.g14314' => 'ugi', 'vmacro06762' => 'vma', 'vmacro09257' => 'vma', 'vmacro12331' => 'vma', 'VMungo0251G2883' => 'vmu', 'VMungo1127G0389' => 'vmu', 'VMungo1215G1646' => 'vmu', 'Zm00001eb105690' => 'zma', 'Zm00001eb322350' => 'zma', 'Zm00001eb378330' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001125' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001125' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001125' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001125' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151