Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496411 Rosa chinensis HOM05D000983 ORTHO05D015467 5.3e-62 240.7 113 100.0
RcHm_v2.0_Chr2g0111851 Rosa chinensis HOM05D000983 ORTHO05D342199 1.2e-34 149.8 91 80.2
RcHm_v2.0_Chr7g0227031 Rosa chinensis HOM05D000983 ORTHO05D015467 2.9e-23 112.1 58 87.9
RcHm_v2.0_Chr6g0303841 Rosa chinensis HOM05D000983 ORTHO05D001922 1.6e-18 96.3 162 39.5
FAN15G0491 Fragaria x ananassa HOM05D000983 ORTHO05D001922 2.3e-17 92.4 162 38.3
RcHm_v2.0_Chr6g0270761 Rosa chinensis HOM05D000983 ORTHO05D015467 2.3e-17 92.4 42 95.2
Prupe.1G357800 Prunus persica HOM05D000983 ORTHO05D001922 1.5e-16 89.7 162 37.0
QL02p013395 Quercus lobata HOM05D000983 ORTHO05D001922 1.5e-16 89.7 162 36.4
FvH4_2g37840 Fragaria vesca HOM05D000983 ORTHO05D001922 2.0e-16 89.4 162 37.0
RcHm_v2.0_Chr7g0227001 Rosa chinensis HOM05D000983 ORTHO05D015467 7.5e-16 87.4 47 80.9
Gohir.A05G255400 Gossypium hirsutum HOM05D000983 ORTHO05D001922 9.8e-16 87.0 161 37.3
Gohir.D05G256900 Gossypium hirsutum HOM05D000983 ORTHO05D001922 9.8e-16 87.0 161 37.3
Gorai.009G268400 Gossypium raimondii HOM05D000983 ORTHO05D001922 9.8e-16 87.0 161 37.3
MD08G1006000 Malus domestica HOM05D000983 ORTHO05D001922 2.9e-15 85.5 162 35.8
CANSAT25G3388 Cannabis sativa HOM05D000983 ORTHO05D001922 3.7e-15 85.1 162 35.2
Haze_22732 Corylus avellana HOM05D000983 ORTHO05D001922 3.7e-15 85.1 165 35.8
CiPaw.08G070100 Carya illinoinensis HOM05D000983 ORTHO05D001922 6.4e-15 84.3 162 34.6
Actinidia17027 Actinidia chinensis HOM05D000983 ORTHO05D001922 8.3e-15 84.0 165 33.9
Thecc.08G054200 Theobroma cacao HOM05D000983 ORTHO05D001922 1.4e-14 83.2 161 36.0
Ciclev10001348m.g Citrus clementina HOM05D000983 ORTHO05D001922 3.2e-14 82.0 162 35.8
MD15G1005200 Malus domestica HOM05D000983 ORTHO05D001922 3.2e-14 82.0 42 81.0
CiPaw.07G142000 Carya illinoinensis HOM05D000983 ORTHO05D001922 4.1e-14 81.6 162 34.6
COL.COLO4_26062 Corchorus olitorius HOM05D000983 ORTHO05D001922 4.1e-14 81.6 161 36.0
Duzib093G2100 Durio zibethinus HOM05D000983 ORTHO05D001922 4.1e-14 81.6 161 36.0
Potri.002G014300 Populus trichocarpa HOM05D000983 ORTHO05D001922 9.2e-14 80.5 162 34.0
vmacro21841 Vaccinium macrocarpon HOM05D000983 ORTHO05D001922 9.2e-14 80.5 38 89.5
Dinv31909 Davidia involucrata HOM05D000983 ORTHO05D001922 1.2e-13 80.1 162 36.4
Sabra02G0011400 Salix brachista HOM05D000983 ORTHO05D001922 1.6e-13 79.7 162 32.7
RcHm_v2.0_Chr1g0327581 Rosa chinensis HOM05D000983 ORTHO05D015467 2.7e-13 79.0 34 97.1
GSVIVG01008714001 Vitis vinifera HOM05D000983 ORTHO05D001922 2.7e-13 79.0 161 34.2
Lj4A802G107 Lonicera japonica HOM05D000983 ORTHO05D001922 4.6e-13 78.2 42 76.2
TWI56G1107 Tripterygium wilfordii HOM05D000983 ORTHO05D001922 4.6e-13 78.2 161 33.5
Cpa.g.sc26.242 Carica papaya HOM05D000983 ORTHO05D001922 6.0e-13 77.8 42 73.8
Lsat_1_v5_gn_8_29040 Lactuca sativa HOM05D000983 ORTHO05D001922 6.0e-13 77.8 162 35.2
Gorai.010G001000 Gossypium raimondii HOM05D000983 ORTHO05D001922 7.8e-13 77.4 161 34.2
THA.LOC104813768 Tarenaya hassleriana HOM05D000983 ORTHO05D001922 7.8e-13 77.4 42 73.8
PGR142G4423 Punica granatum HOM05D000983 ORTHO05D001922 1.0e-12 77.0 42 73.8
CSS0008836 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D001922 1.7e-12 76.3 162 33.3
Phvul.001G001900 Phaseolus vulgaris HOM05D000983 ORTHO05D001922 1.7e-12 76.3 168 31.0
Solyc04g082090.3 Solanum lycopersicum HOM05D000983 ORTHO05D001922 2.3e-12 75.9 162 33.3
MELO3C017002.2 Cucumis melo HOM05D000983 ORTHO05D001922 3.0e-12 75.5 162 34.6
HanXRQChr08g0215691 Helianthus annuus HOM05D000983 ORTHO05D001922 3.0e-12 75.5 162 34.0
Manes.05G141400 Manihot esculenta HOM05D000983 ORTHO05D001922 3.0e-12 75.5 162 32.7
Rhsim06G0009900 Rhododendron simsii HOM05D000983 ORTHO05D001922 3.0e-12 75.5 162 34.6
Sp5g31260 Schrenkiella parvula HOM05D000983 ORTHO05D001922 3.9e-12 75.1 162 33.3
Sopen04g035730 Solanum pennellii HOM05D000983 ORTHO05D001922 3.9e-12 75.1 162 33.3
Aa31LG4G6250 Aethionema arabicum HOM05D000983 ORTHO05D001922 5.0e-12 74.7 162 33.3
Thhalv10018631m.g Eutrema salsugineum HOM05D000983 ORTHO05D001922 5.0e-12 74.7 162 32.7
Lj4A16G126 Lonicera japonica HOM05D000983 ORTHO05D001922 5.0e-12 74.7 162 34.0
Medtr1g026170 Medicago truncatula HOM05D000983 ORTHO05D001922 5.0e-12 74.7 168 31.0
TPR.G26412 Trifolium pratense HOM05D000983 ORTHO05D001922 5.0e-12 74.7 58 56.9
Aqoxy6G01875 Aquilegia oxysepala HOM05D000983 ORTHO05D001922 6.6e-12 74.3 42 73.8
AL2G36170 Arabidopsis lyrata HOM05D000983 ORTHO05D001922 6.6e-12 74.3 162 33.3
AT1G76130 Arabidopsis thaliana HOM05D000983 ORTHO05D001922 6.6e-12 74.3 162 33.3
Nn5g30882 Nelumbo nucifera HOM05D000983 ORTHO05D001922 6.6e-12 74.3 164 33.5
SGA_v2.0_scaffold275G46549 Striga asiatica HOM05D000983 ORTHO05D001922 6.6e-12 74.3 162 32.7
BcaC08g47107 Brassica carinata HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
BcaC08g47288 Brassica carinata HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
BcaNung05115 Brassica carinata HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
A07p41700 Brassica napus HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
C06p50080 Brassica napus HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
BolC6t40047H Brassica oleracea HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
BraA07t31699Z Brassica rapa HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 71.4
CSS0024586 Camellia sinensis var. sinensis HOM05D000983 ORTHO05D001922 8.6e-12 73.9 42 73.8
Ca_13488_v3 Cicer arietinum L. HOM05D000983 ORTHO05D001922 8.6e-12 73.9 168 31.0
Cc06_g08480 Coffea canephora HOM05D000983 ORTHO05D001922 8.6e-12 73.9 37 83.8
ECA233G4007 Erigeron canadensis HOM05D000983 ORTHO05D001922 8.6e-12 73.9 162 34.0
PGSC0003DMG400009891 Solanum tuberosum HOM05D000983 ORTHO05D001922 8.6e-12 73.9 162 32.7
Glyma.14G222600 Glycine max HOM05D000983 ORTHO05D001922 1.1e-11 73.6 168 31.0
DCAR_016745 Daucus carota HOM05D000983 ORTHO05D001922 1.5e-11 73.2 162 34.0
SalBow8G1360 Salvia bowleyana HOM05D000983 ORTHO05D001922 1.5e-11 73.2 162 34.0
CAN.G311.88 Capsicum annuum HOM05D000983 ORTHO05D001922 1.9e-11 72.8 162 33.3
Gohir.A06G000800 Gossypium hirsutum HOM05D000983 ORTHO05D001922 1.9e-11 72.8 161 33.5
Oeu060941.1 Olea europaea HOM05D000983 ORTHO05D001922 1.9e-11 72.8 162 33.3
VMungo0647G0618 Vigna mungo HOM05D000983 ORTHO05D001922 1.9e-11 72.8 168 29.2
CARHR069670 Cardamine hirsuta HOM05D000983 ORTHO05D001922 2.5e-11 72.4 162 32.7
AUR62013844 Chenopodium quinoa HOM05D000983 ORTHO05D001922 2.5e-11 72.4 162 32.7
Nitab4.5_0003280g0040 Nicotiana tabacum HOM05D000983 ORTHO05D001922 2.5e-11 72.4 162 33.3
Peaxi162Scf00174g00137 Petunia axillaris HOM05D000983 ORTHO05D001922 2.5e-11 72.4 42 71.4
unitig_0.g2095 Utricularia gibba HOM05D000983 ORTHO05D001922 2.5e-11 72.4 162 32.7
Atru.chr13.188 Acer truncatum HOM05D000983 ORTHO05D001922 3.3e-11 72.0 162 35.2
CsaV3_4G037030 Cucumis sativus L. HOM05D000983 ORTHO05D001922 4.3e-11 71.6 162 32.1
Hma1.2p1_1260F.1_g270970 Hydrangea macrophylla HOM05D000983 ORTHO05D001922 4.3e-11 71.6 42 71.4
Carub.0002s2301 Capsella rubella HOM05D000983 ORTHO05D001922 5.6e-11 71.2 42 69.0
Lalb_Chr19g0131631 Lupinus albus HOM05D000983 ORTHO05D001922 7.3e-11 70.9 162 32.1
Psat6g001000 Pisum sativum HOM05D000983 ORTHO05D001922 7.3e-11 70.9 58 53.4
SalBow7G1781 Salvia bowleyana HOM05D000983 ORTHO05D001922 7.3e-11 70.9 162 33.3
TAR625G0028 Trochodendron aralioides HOM05D000983 ORTHO05D001922 9.5e-11 70.5 164 34.1
arahy.Tifrunner.gnm1.ann1.5SXX56 Arachis hypogaea HOM05D000983 ORTHO05D001922 1.6e-10 69.7 58 53.4
EL10Ac1g02044 Beta vulgaris HOM05D000983 ORTHO05D001922 1.6e-10 69.7 42 69.0
PSO541G6376 Papaver somniferum HOM05D000983 ORTHO05D001922 1.6e-10 69.7 162 33.3
Eucgr.F03529 Eucalyptus grandis HOM05D000983 ORTHO05D001922 2.1e-10 69.3 42 66.7
Lj5g0018308 Lotus japonicus HOM05D000983 ORTHO05D001922 2.1e-10 69.3 42 66.7
Sc26g0004540 Simmondsia chinensis HOM05D000983 ORTHO05D001922 2.8e-10 68.9 42 69.0
Migut.J01641 Erythranthe guttata HOM05D000983 ORTHO05D001922 3.6e-10 68.6 162 31.5
arahy.Tifrunner.gnm1.ann1.2SN1MA Arachis hypogaea HOM05D000983 ORTHO05D001922 4.7e-10 68.2 58 51.7
Medtr6g027900 Medicago truncatula HOM05D000983 ORTHO05D015467 8.1e-10 67.4 41 68.3
PSO675G0993 Papaver somniferum HOM05D000983 ORTHO05D001922 8.1e-10 67.4 162 32.7
Ah.11g040570 Amaranthus hybridus HOM05D000983 ORTHO05D001922 1.1e-09 67.0 42 66.7
AUR62013843 Chenopodium quinoa HOM05D000983 ORTHO05D001922 1.4e-09 66.6 42 66.7
MBI05_g12851_MAGBIO Magnolia biondii HOM05D000983 ORTHO05D001922 1.4e-09 66.6 163 33.7
MSTRG.25284 Avicennia marina HOM05D000983 ORTHO05D001922 2.3e-09 65.9 162 32.7
AUR62036756 Chenopodium quinoa HOM05D000983 ORTHO05D001922 2.3e-09 65.9 162 31.5
Hund05141 Selenicereus undatus HOM05D000983 ORTHO05D001922 3.1e-09 65.5 42 61.9
AUR62036762 Chenopodium quinoa HOM05D000983 ORTHO05D001922 5.2e-09 64.7 168 29.8
Medtr3g062030 Medicago truncatula HOM05D000983 ORTHO05D015467 5.2e-09 64.7 37 75.7
SEGI_04432 Sequoiadendron giganteum HOM05D000983 ORTHO05D001922 8.9e-09 63.9 164 32.3
ATR0661G021 Amborella trichopoda HOM05D000983 ORTHO05D001922 1.2e-08 63.5 42 66.7
CDE02G3461 Ceratophyllum demersum HOM05D000983 ORTHO05D001922 3.4e-08 62.0 39 69.2
CDE06G1604 Ceratophyllum demersum HOM05D000983 ORTHO05D026952 3.4e-08 62.0 39 69.2
Mapoly0040s0003 Marchantia polymorpha HOM05D000983 ORTHO05D001922 3.4e-08 62.0 42 57.1
Zm00001eb084540 Zea mays HOM05D000983 ORTHO05D001922 9.9e-08 60.5 47 53.2
HPP92_014998 Vanilla planifolia HOM05D000983 ORTHO05D001922 2.4e-06 55.8 163 27.6
Pp3c11_6560 Physcomitrium patens HOM05D000983 ORTHO05D001922 3.2e-06 55.5 164 29.3
PRCOL_00005137 Prasinoderma coloniale HOM05D000983 ORTHO05D001922 3.2e-06 55.5 42 52.4
Pp3c2_3670 Physcomitrium patens HOM05D000983 ORTHO05D001922 4.1e-06 55.1 44 52.3
C06p32220 Brassica napus HOM05D060490 ORTHO05D015467 5.4e-06 54.7 36 63.9
BolC6t38345H Brassica oleracea HOM05D060490 ORTHO05D015467 5.4e-06 54.7 36 63.9


User provided reference genes

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