Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.4e-173 612.1 314 100.0
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.9e-158 562.0 314 92.4
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-156 556.2 314 91.7
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.0e-150 534.6 315 89.2
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.6e-135 485.7 260 95.8
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.5e-135 485.0 260 95.8
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.2e-119 433.7 345 69.9
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 2.1e-116 422.9 247 87.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 4.7e-116 421.8 347 67.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.8e-104 383.3 239 80.3
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.7e-102 376.7 252 75.0
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.9e-102 375.9 235 80.0
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 2.9e-102 375.9 255 75.3
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 3.3e-101 372.5 255 75.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 2.8e-100 369.4 246 76.0
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.0e-99 367.5 244 76.6
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.4e-99 367.1 255 73.3
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 3.0e-99 365.9 293 65.5
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 5.2e-99 365.2 257 72.8
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 6.8e-99 364.8 255 72.5
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 6.8e-99 364.8 233 78.1
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 5.7e-98 361.7 280 67.9
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 9.8e-98 360.9 252 75.0
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 4.9e-97 358.6 221 81.9
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 6.4e-97 358.2 272 70.6
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 6.4e-97 358.2 320 62.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.4e-96 357.1 228 78.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.4e-96 357.1 237 75.1
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.1e-96 355.5 246 74.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 5.4e-96 355.1 221 81.4
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 7.0e-96 354.8 308 64.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.2e-95 354.0 278 66.5
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.6e-95 353.6 221 81.0
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-95 353.2 252 72.6
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.0e-95 353.2 252 72.6
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.0e-95 353.2 227 79.3
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 3.5e-95 352.4 250 73.2
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.7e-94 350.1 331 59.2
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 5.0e-94 348.6 257 71.2
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 8.6e-94 347.8 256 70.7
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 4.3e-93 345.5 235 75.3
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 5.6e-93 345.1 246 73.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 7.3e-93 344.7 220 76.8
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 9.5e-93 344.4 232 73.3
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.2e-92 344.0 218 78.0
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.2e-92 344.0 227 77.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 3.6e-92 342.4 284 66.5
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.7e-92 342.0 249 72.7
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 4.7e-92 342.0 247 72.1
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 6.2e-92 341.7 284 66.2
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 8.0e-92 341.3 246 71.1
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 8.0e-92 341.3 262 67.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.0e-91 340.9 284 65.8
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.4e-91 340.5 234 74.4
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.8e-91 340.1 284 66.2
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 4.0e-91 339.0 236 74.2
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.2e-91 338.6 261 67.8
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 6.8e-91 338.2 298 64.1
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 6.8e-91 338.2 273 68.5
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 8.9e-91 337.8 227 75.8
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.5e-90 337.0 228 76.3
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.5e-90 337.0 283 62.5
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 2.6e-90 336.3 273 68.1
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.6e-90 336.3 287 66.6
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 4.4e-90 335.5 218 76.6
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 4.4e-90 335.5 218 76.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 7.5e-90 334.7 212 77.8
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 7.5e-90 334.7 218 76.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 9.8e-90 334.3 219 76.3
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 9.8e-90 334.3 221 78.7
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.3e-89 334.0 229 72.5
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 3.7e-89 332.4 218 75.7
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.4e-89 331.6 210 81.0
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 6.4e-89 331.6 249 67.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 1.1e-88 330.9 227 73.6
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.4e-88 330.5 260 69.6
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.4e-88 330.5 229 72.1
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.4e-88 330.5 227 76.2
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.4e-88 330.5 218 75.2
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.4e-88 329.7 285 66.7
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 3.2e-88 329.3 220 78.2
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 3.2e-88 329.3 223 74.9
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 3.2e-88 329.3 315 60.0
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 5.4e-88 328.6 218 74.8
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 7.0e-88 328.2 227 73.6
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 7.0e-88 328.2 227 73.6
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.2e-87 327.4 234 70.1
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.2e-87 327.4 223 74.4
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.0e-87 326.6 220 77.3
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.6e-87 325.5 227 74.4
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 6.0e-87 325.1 223 76.7
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 6.0e-87 325.1 227 71.4
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 7.8e-87 324.7 230 71.3
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 7.8e-87 324.7 257 64.6
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.3e-86 323.9 318 56.6
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 6.6e-86 321.6 205 80.5
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.1e-85 320.9 205 80.5
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.9e-85 320.1 255 66.7
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.1e-83 314.3 291 63.2
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 5.2e-83 312.0 217 73.7
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.5e-82 310.5 189 81.0
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.2e-81 306.6 340 53.8
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.2e-80 302.8 204 77.0
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 2.5e-77 293.1 165 87.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 4.1e-72 275.8 221 66.1
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 7.8e-71 271.6 231 63.6
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.5e-69 266.5 210 67.1
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.1e-67 261.2 222 60.8
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 6.8e-67 258.5 220 66.8
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.7e-62 243.8 197 61.4
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.3e-60 237.7 205 58.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 3.6e-60 236.1 142 80.3
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 8.7e-54 214.9 159 65.4
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 6.4e-49 198.7 183 55.2
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 3.2e-48 196.4 196 53.6
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 3.2e-48 196.4 202 50.0
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.2e-47 194.5 143 75.5
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 9.6e-45 184.9 178 51.1
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 1.8e-43 180.6 206 46.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.2e-42 177.9 138 69.6
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 5.8e-42 175.6 158 65.8
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.1e-24 118.2 143 40.6
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-24 118.2 65 92.3
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 5.7e-21 105.9 92 65.2
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.7e-20 103.2 87 59.8
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.5e-16 89.4 53 83.0
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 8.8e-06 55.5 126 24.6


User provided reference genes

Program Settings