Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494921 Rosa chinensis HOM05D002869 ORTHO05D003080 8.7e-54 213.4 108 100.0
RcHm_v2.0_Chr3g0456681 Rosa chinensis HOM05D002869 ORTHO05D003080 1.4e-16 89.7 62 80.6
Prupe.6G316200 Prunus persica HOM05D002869 ORTHO05D003080 9.1e-11 70.5 63 69.8
Dinv30859 Davidia involucrata HOM05D002869 ORTHO05D003080 2.6e-10 68.9 65 66.2
vmacro19716 Vaccinium macrocarpon HOM05D002869 ORTHO05D003080 2.9e-09 65.5 62 62.9
MELO3C004205.2 Cucumis melo HOM05D002869 ORTHO05D003080 3.8e-09 65.1 67 61.2
Duzib128G0710 Durio zibethinus HOM05D002869 ORTHO05D003080 3.8e-09 65.1 68 57.4
Dinv24416 Davidia involucrata HOM05D002869 ORTHO05D003080 5.0e-09 64.7 65 63.1
FAN02G3164 Fragaria x ananassa HOM05D002869 ORTHO05D003080 5.0e-09 64.7 62 61.3
Cpa.g.sc48.131 Carica papaya HOM05D002869 ORTHO05D003080 6.5e-09 64.3 64 57.8
CsaV3_2G006850 Cucumis sativus L. HOM05D002869 ORTHO05D003080 8.5e-09 63.9 67 61.2
FAN09G0459 Fragaria x ananassa HOM05D002869 ORTHO05D003080 8.5e-09 63.9 62 61.3
ClCG02G015160 Citrullus lanatus HOM05D002869 ORTHO05D003080 1.1e-08 63.5 67 61.2
SGA_v2.0_scaffold4G01963 Striga asiatica HOM05D002869 ORTHO05D003080 1.1e-08 63.5 81 50.6
Atru.chr2.131 Acer truncatum HOM05D002869 ORTHO05D003080 1.5e-08 63.2 64 57.8
GSVIVG01031201001 Vitis vinifera HOM05D002869 ORTHO05D003080 1.5e-08 63.2 66 62.1
FAN05G2850 Fragaria x ananassa HOM05D002869 ORTHO05D003080 1.9e-08 62.8 62 59.7
CANSAT54G0306 Cannabis sativa HOM05D002869 ORTHO05D003080 2.5e-08 62.4 64 60.9
FvH4_6g07100 Fragaria vesca HOM05D002869 ORTHO05D003080 2.5e-08 62.4 62 59.7
FAN14G2054 Fragaria x ananassa HOM05D002869 ORTHO05D003080 2.5e-08 62.4 62 59.7
MD04G1196100 Malus domestica HOM05D002869 ORTHO05D003080 2.5e-08 62.4 64 59.4
MD12G1209100 Malus domestica HOM05D002869 ORTHO05D003080 2.5e-08 62.4 64 60.9
TAR365G0165 Trochodendron aralioides HOM05D002869 ORTHO05D003080 3.2e-08 62.0 65 60.0
Gohir.D13G113900 Gossypium hirsutum HOM05D002869 ORTHO05D003080 4.2e-08 61.6 65 58.5
Hma1.2p1_0472F.1_g159810 Hydrangea macrophylla HOM05D002869 ORTHO05D003080 4.2e-08 61.6 63 60.3
CiPaw.08G157600 Carya illinoinensis HOM05D002869 ORTHO05D003080 5.5e-08 61.2 64 53.1
Lsat_1_v5_gn_5_102260 Lactuca sativa HOM05D002869 ORTHO05D003080 5.5e-08 61.2 75 53.3
MBI19_g14286_MAGBIO Magnolia biondii HOM05D002869 ORTHO05D003080 7.2e-08 60.8 68 57.4
PGR031G0731 Punica granatum HOM05D002869 ORTHO05D003080 7.2e-08 60.8 64 57.8
TWI12G0132 Tripterygium wilfordii HOM05D002869 ORTHO05D003080 7.2e-08 60.8 64 56.2
Actinidia21511 Actinidia chinensis HOM05D002869 ORTHO05D003080 9.4e-08 60.5 64 62.5
Nn4g25690 Nelumbo nucifera HOM05D002869 ORTHO05D003080 1.2e-07 60.1 64 56.2
Nitab4.5_0014337g0010 Nicotiana tabacum HOM05D002869 ORTHO05D003080 1.2e-07 60.1 74 54.1
TWI56G1385 Tripterygium wilfordii HOM05D002869 ORTHO05D003080 1.2e-07 60.1 64 54.7
Manes.09G174700 Manihot esculenta HOM05D002869 ORTHO05D003080 1.6e-07 59.7 64 59.4
Actinidia16843 Actinidia chinensis HOM05D002869 ORTHO05D003080 2.1e-07 59.3 64 57.8
CSS0019576 Camellia sinensis var. sinensis HOM05D002869 ORTHO05D003080 2.1e-07 59.3 65 58.5
CiPaw.07G113500 Carya illinoinensis HOM05D002869 ORTHO05D003080 2.1e-07 59.3 63 55.6
Ca_10158_v3 Cicer arietinum L. HOM05D002869 ORTHO05D003080 2.1e-07 59.3 64 56.2
Oeu020898.1 Olea europaea HOM05D002869 ORTHO05D003080 2.1e-07 59.3 64 57.8
AL6G38910 Arabidopsis lyrata HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 51.6
AT5G26980 Arabidopsis thaliana HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 51.6
CARHR186560 Cardamine hirsuta HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 54.7
Lalb_Chr02g0147961 Lupinus albus HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 59.4
Medtr1g083790 Medicago truncatula HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 56.2
Nn3g21595 Nelumbo nucifera HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 54.7
Peaxi162Scf00073g00129 Petunia axillaris HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 57.8
Rhsim11G0092800 Rhododendron simsii HOM05D002869 ORTHO05D003080 2.7e-07 58.9 64 56.2
CSS0023652 Camellia sinensis var. sinensis HOM05D002869 ORTHO05D003080 3.6e-07 58.5 64 57.8
Psat6g152360 Pisum sativum HOM05D002869 ORTHO05D003080 3.6e-07 58.5 64 57.8
Sed0002838 Sechium edule HOM05D002869 ORTHO05D003080 3.6e-07 58.5 65 55.4
CAN.G1273.17 Capsicum annuum HOM05D002869 ORTHO05D003080 4.7e-07 58.2 64 53.1
Actinidia35536 Actinidia chinensis HOM05D002869 ORTHO05D003080 6.1e-07 57.8 64 56.2
MSTRG.5132 Avicennia marina HOM05D002869 ORTHO05D003080 6.1e-07 57.8 64 57.8
Cfa005860 Carpinus fangiana HOM05D002869 ORTHO05D003080 6.1e-07 57.8 63 55.6
Ciclev10001826m.g Citrus clementina HOM05D002869 ORTHO05D003080 6.1e-07 57.8 65 56.9
arahy.Tifrunner.gnm1.ann1.UBBZ0M Arachis hypogaea HOM05D002869 ORTHO05D003080 8.0e-07 57.4 68 52.9
CDE05G3251 Ceratophyllum demersum HOM05D002869 ORTHO05D003080 8.0e-07 57.4 64 57.8
Rhsim05G0134300 Rhododendron simsii HOM05D002869 ORTHO05D003080 8.0e-07 57.4 64 57.8
TPR.G14950 Trifolium pratense HOM05D002869 ORTHO05D003080 8.0e-07 57.4 65 58.5
unitig_37.g12624 Utricularia gibba HOM05D002869 ORTHO05D003080 8.0e-07 57.4 64 54.7
arahy.Tifrunner.gnm1.ann1.RB8T8D Arachis hypogaea HOM05D002869 ORTHO05D003080 1.0e-06 57.0 74 48.6
Cc02_g34600 Coffea canephora HOM05D002869 ORTHO05D003080 1.0e-06 57.0 66 56.1
Migut.B00985 Erythranthe guttata HOM05D002869 ORTHO05D003080 1.0e-06 57.0 64 54.7
Lalb_Chr21g0310381 Lupinus albus HOM05D002869 ORTHO05D003080 1.0e-06 57.0 67 56.7
vmacro01540 Vaccinium macrocarpon HOM05D002869 ORTHO05D003080 1.0e-06 57.0 62 53.2
Sed0016078 Sechium edule HOM05D002869 ORTHO05D003080 1.4e-06 56.6 67 53.7
Haze_04989 Corylus avellana HOM05D002869 ORTHO05D003080 1.8e-06 56.2 63 54.0
SGA_v2.0_scaffold53G19305 Striga asiatica HOM05D002869 ORTHO05D003080 1.8e-06 56.2 64 54.7
Thecc.05G319400 Theobroma cacao HOM05D002869 ORTHO05D003080 1.8e-06 56.2 69 53.6
Potri.013G011100 Populus trichocarpa HOM05D002869 ORTHO05D003080 2.3e-06 55.8 70 54.3
Solyc01g100170.3 Solanum lycopersicum HOM05D002869 ORTHO05D003080 2.3e-06 55.8 64 50.0
VMungo1383G0689 Vigna mungo HOM05D002869 ORTHO05D003080 2.3e-06 55.8 65 52.3
CDE11G0912 Ceratophyllum demersum HOM05D002869 ORTHO05D003080 3.0e-06 55.5 64 54.7
Lj9A205T17 Lonicera japonica HOM05D002869 ORTHO05D003080 3.0e-06 55.5 64 53.1
Nitab4.5_0002715g0150 Nicotiana tabacum HOM05D002869 ORTHO05D003080 3.0e-06 55.5 64 54.7
Phvul.007G199700 Phaseolus vulgaris HOM05D002869 ORTHO05D003080 3.0e-06 55.5 64 53.1
Gohir.A11G271300 Gossypium hirsutum HOM05D002869 ORTHO05D003080 4.0e-06 55.1 67 53.7
Gorai.007G303900 Gossypium raimondii HOM05D002869 ORTHO05D003080 4.0e-06 55.1 67 53.7
Lsat_1_v5_gn_9_123001 Lactuca sativa HOM05D002869 ORTHO05D003080 4.0e-06 55.1 64 53.1
SalBow7G0446 Salvia bowleyana HOM05D002869 ORTHO05D003080 4.0e-06 55.1 64 54.7
Sopen01g043660 Solanum pennellii HOM05D002869 ORTHO05D003080 4.0e-06 55.1 64 50.0
PGSC0003DMG400024732 Solanum tuberosum HOM05D002869 ORTHO05D003080 4.0e-06 55.1 64 50.0
EL10Ac4g09841 Beta vulgaris HOM05D002869 ORTHO05D003080 5.2e-06 54.7 65 49.2
Gohir.A13G111350 Gossypium hirsutum HOM05D002869 ORTHO05D003080 5.2e-06 54.7 65 55.4
Gohir.D11G281500 Gossypium hirsutum HOM05D002869 ORTHO05D003080 5.2e-06 54.7 67 53.7
Gorai.013G127800 Gossypium raimondii HOM05D002869 ORTHO05D003080 5.2e-06 54.7 65 53.8
QL03p017968 Quercus lobata HOM05D002869 ORTHO05D003080 5.2e-06 54.7 66 50.0
Sabra13G0009800 Salix brachista HOM05D002869 ORTHO05D003080 5.2e-06 54.7 68 54.4
Hund21733 Selenicereus undatus HOM05D002869 ORTHO05D003080 5.2e-06 54.7 67 47.8
unitig_46.g18372 Utricularia gibba HOM05D002869 ORTHO05D003080 5.2e-06 54.7 64 53.1
FAN24G2757 Fragaria x ananassa HOM05D002869 ORTHO05D003080 6.7e-06 54.3 63 57.1
Glyma.10G149000 Glycine max HOM05D002869 ORTHO05D003080 6.7e-06 54.3 64 50.0
Glyma.20G239100 Glycine max HOM05D002869 ORTHO05D003080 6.7e-06 54.3 64 53.1
Phvul.001G210900 Phaseolus vulgaris HOM05D002869 ORTHO05D003080 6.7e-06 54.3 62 54.8
QL12p028673 Quercus lobata HOM05D002869 ORTHO05D003080 6.7e-06 54.3 63 52.4
Sc09g0002770 Simmondsia chinensis HOM05D002869 ORTHO05D003080 6.7e-06 54.3 62 56.5
Sp3g04590 Schrenkiella parvula HOM05D002869 ORTHO05D003080 8.8e-06 53.9 64 46.9
HPP92_002555 Vanilla planifolia HOM05D002869 ORTHO05D003080 8.8e-06 53.9 67 52.2


User provided reference genes

Program Settings