Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 1.6e-256 889.0 479 100.0
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 2.8e-197 692.2 481 82.7
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.5e-195 684.9 481 82.7
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 3.0e-191 672.2 481 81.1
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 2.4e-172 609.4 483 73.3
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 1.6e-163 580.1 518 67.8
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 1.9e-161 573.2 478 73.2
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 1.7e-146 523.5 468 67.5
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 1.9e-140 503.4 475 65.1
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 7.8e-139 498.0 488 64.1
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 1.6e-136 490.3 488 61.1
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 5.3e-135 485.3 461 65.3
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 1.5e-134 483.8 474 63.5
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 1.3e-133 480.7 481 61.5
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 3.0e-130 469.5 469 62.9
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 8.7e-130 468.0 475 62.5
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 2.5e-129 466.5 458 63.3
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 7.3e-129 464.9 470 62.1
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 6.2e-128 461.8 459 61.9
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 8.1e-128 461.5 463 61.3
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 1.8e-127 460.3 481 60.9
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 2.0e-126 456.8 490 60.6
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 7.6e-126 454.9 463 61.3
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 6.4e-125 451.8 468 60.5
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 1.1e-124 451.1 460 61.5
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 1.1e-124 451.1 454 62.3
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 5.5e-124 448.7 458 62.0
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 2.1e-123 446.8 490 59.8
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 3.5e-123 446.0 477 58.9
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 1.0e-122 444.5 468 60.5
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 1.0e-122 444.5 494 58.5
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 1.3e-122 444.1 468 60.5
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 1.3e-122 444.1 457 61.1
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 1.8e-122 443.7 493 58.8
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 3.9e-122 442.6 476 60.3
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 1.1e-121 441.0 459 61.0
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 2.5e-121 439.9 482 57.3
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 3.3e-121 439.5 457 60.2
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 9.6e-121 438.0 460 59.1
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 2.8e-120 436.4 475 57.5
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 6.2e-120 435.3 532 53.4
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 1.1e-119 434.5 457 60.8
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 1.4e-119 434.1 472 60.2
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 5.3e-119 432.2 454 60.6
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 9.0e-119 431.4 456 59.4
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 3.4e-118 429.5 468 59.4
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 3.4e-118 429.5 459 61.9
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 3.4e-118 429.5 456 61.2
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 1.7e-117 427.2 458 59.8
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 6.5e-117 425.2 458 58.5
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 6.5e-117 425.2 516 55.8
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 1.1e-116 424.5 457 60.4
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 2.5e-116 423.3 472 59.3
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 7.1e-116 421.8 488 55.9
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 1.2e-115 421.0 491 56.0
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 1.8e-114 417.2 471 58.0
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 2.3e-114 416.8 464 57.1
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 1.1e-113 414.5 496 56.9
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 1.1e-113 414.5 503 55.5
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 5.7e-113 412.1 470 51.9
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 4.8e-112 409.1 467 57.0
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 2.4e-111 406.8 479 51.4
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 1.0e-109 401.4 460 57.0
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 1.0e-109 401.4 480 55.2
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 6.5e-109 398.7 462 56.9
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 6.5e-109 398.7 471 55.0
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 6.1e-107 392.1 458 56.1
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 1.1e-105 387.9 458 55.7
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 4.3e-105 386.0 473 55.0
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 1.4e-103 380.9 455 56.0
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 1.9e-100 370.5 467 54.2
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 2.7e-99 366.7 462 53.2
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 4.6e-99 365.9 466 54.3
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 6.1e-99 365.5 465 53.1
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 6.1e-99 365.5 466 54.3
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 6.1e-99 365.5 458 54.4
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 6.1e-99 365.5 513 49.7
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 7.9e-99 365.2 513 49.3
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 1.4e-98 364.4 466 54.3
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 2.2e-96 357.1 505 49.5
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 6.3e-96 355.5 467 52.9
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 9.1e-95 351.7 467 52.9
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 5.0e-93 345.9 459 53.2
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 9.4e-92 341.7 460 52.6
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 2.1e-91 340.5 438 54.1
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 1.8e-90 337.4 460 52.0
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 6.7e-90 335.5 406 54.9
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 2.6e-89 333.6 460 50.9
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 1.3e-88 331.3 466 51.3
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 1.3e-85 321.2 480 50.4
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 1.9e-84 317.4 559 46.3
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 4.7e-83 312.8 355 60.6
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 8.2e-80 302.0 535 44.1
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 8.2e-80 302.0 535 44.1
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 9.1e-79 298.5 568 42.6
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.2e-75 288.1 480 41.0
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 9.2e-55 218.8 281 49.8
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.2e-54 218.4 253 49.4
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 3.1e-50 203.8 237 52.3
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 1.2e-43 181.8 117 82.1
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 1.6e-43 181.4 266 43.2
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 6.2e-43 179.5 228 48.2
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 8.1e-43 179.1 351 44.2
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 6.0e-38 162.9 249 41.8
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.7e-37 161.4 183 52.5
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 5.6e-36 156.4 81 98.8
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 1.7e-32 144.8 156 54.5
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 2.2e-32 144.4 97 78.4
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 4.9e-32 143.3 110 72.7
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 1.3e-24 118.6 402 35.6
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 6.4e-24 116.3 152 49.3
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 1.1e-23 115.5 163 47.9
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 3.5e-22 110.5 134 47.0
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 3.9e-21 107.1 171 42.7
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 3.1e-18 97.4 87 60.9
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 4.5e-17 93.6 336 36.3
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 9.9e-17 92.4 160 40.6
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 6.0e-14 83.2 93 48.4
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 8.7e-13 79.3 87 50.6
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 1.1e-12 79.0 166 41.6
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 3.4e-09 67.4 50 70.0


User provided reference genes

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