Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.5e-175 618.2 320 100.0
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 4.3e-165 584.7 320 95.3
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 1.2e-164 583.2 320 95.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.7e-164 581.3 318 91.8
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.8e-163 579.3 318 94.7
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.8e-162 573.5 316 94.6
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 2.0e-146 522.7 321 85.4
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.2e-143 513.5 323 84.2
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-141 506.5 320 81.9
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 3.0e-134 482.3 324 75.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-132 476.9 329 73.6
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 3.6e-132 475.3 324 72.8
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-131 473.8 325 74.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.8e-131 473.0 324 72.8
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 9.9e-130 467.2 324 71.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.3e-129 466.8 325 73.5
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.4e-129 464.2 326 73.0
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.4e-129 464.2 326 73.0
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.2e-128 462.2 338 69.8
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 7.1e-128 461.1 320 69.7
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.6e-127 459.9 326 70.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.1e-127 459.5 338 70.7
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.7e-127 459.1 323 74.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 3.5e-127 458.8 324 71.0
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 6.0e-127 458.0 338 70.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.3e-126 456.8 324 73.5
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 6.6e-126 454.5 320 70.3
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 6.6e-126 454.5 320 69.7
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 6.6e-126 454.5 313 74.8
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.3e-125 451.8 309 76.1
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 4.3e-125 451.8 330 73.9
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.6e-125 451.4 331 68.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 5.6e-125 451.4 314 72.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.6e-124 449.9 326 74.2
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.8e-124 449.1 350 68.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 8.1e-124 447.6 315 73.3
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 8.1e-124 447.6 323 69.7
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.4e-123 446.0 340 68.2
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 3.1e-123 445.7 318 67.9
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 5.8e-122 441.4 322 68.3
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.7e-121 439.9 310 72.6
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 2.2e-121 439.5 317 70.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.9e-121 439.1 323 68.7
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.8e-121 438.7 312 70.2
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 6.4e-121 438.0 309 72.8
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 8.4e-121 437.6 324 67.3
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 8.4e-121 437.6 348 63.2
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.1e-120 437.2 310 72.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.9e-120 436.4 322 67.7
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.9e-120 436.4 328 68.9
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.4e-120 436.0 316 69.9
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.4e-120 436.0 312 69.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.2e-120 435.3 322 68.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 5.4e-120 434.9 339 67.3
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.4e-120 434.9 327 67.3
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 9.3e-120 434.1 322 69.6
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.1e-119 433.0 325 65.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.1e-119 433.0 313 71.2
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.7e-119 432.6 313 70.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.7e-119 432.6 310 72.6
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 2.7e-119 432.6 310 71.9
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.7e-119 432.6 319 67.7
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.6e-119 431.8 324 69.8
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 7.9e-119 431.0 314 72.0
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.9e-119 431.0 355 63.9
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.0e-118 430.6 313 67.7
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.8e-118 429.9 313 70.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 8.7e-118 427.6 309 72.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 4.3e-117 425.2 331 68.6
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.6e-117 424.9 330 69.1
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 9.6e-117 424.1 312 66.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 9.0e-115 417.5 325 64.9
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 9.0e-115 417.5 315 70.5
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 9.0e-115 417.5 314 70.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.2e-114 417.2 331 66.5
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.5e-114 416.8 325 68.3
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.5e-114 416.8 333 68.8
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.8e-114 414.8 329 65.3
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 7.6e-114 414.5 311 70.7
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 8.4e-113 411.0 329 69.6
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.9e-112 409.8 308 65.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 4.2e-112 408.7 298 68.1
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 7.1e-112 407.9 313 68.4
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.2e-111 407.1 320 64.1
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 3.5e-111 405.6 328 67.7
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 4.6e-111 405.2 324 63.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.0e-110 402.5 323 66.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.1e-110 401.7 257 76.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 8.7e-110 401.0 314 65.9
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.1e-108 396.4 322 64.0
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.7e-108 395.6 322 68.6
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 4.8e-108 395.2 324 63.0
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.3e-107 391.7 299 64.9
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.5e-106 390.2 312 66.7
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.0e-106 389.8 221 87.8
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 5.8e-106 388.3 317 66.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-105 386.7 295 72.2
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.0e-102 377.5 289 66.1
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.7e-102 374.8 295 64.4
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.1e-101 374.0 293 64.5
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.1e-101 374.0 330 60.9
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.3e-101 372.5 329 62.9
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 4.3e-101 372.1 291 68.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 7.4e-101 371.3 297 64.3
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.1e-99 367.5 324 59.3
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-99 366.7 287 65.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.9e-99 364.8 260 73.5
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.0e-97 360.9 324 59.3
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.6e-95 353.6 338 62.1
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 5.7e-93 345.1 297 61.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 7.4e-93 344.7 291 63.6
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.1e-91 340.9 279 67.4
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.1e-91 339.0 303 63.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 6.5e-89 331.6 221 71.9
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.9e-88 330.1 333 57.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 2.7e-87 326.2 237 68.4
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 5.7e-85 318.5 267 66.3
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.1e-83 312.4 276 59.8
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.2e-82 310.8 276 58.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 2.0e-82 310.1 326 51.2
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.8e-81 305.8 228 67.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-75 287.3 261 59.4
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-73 280.8 231 63.2
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 3.6e-71 272.7 222 63.1
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 4.4e-69 265.8 287 53.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.4e-69 265.8 163 81.6
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.5e-66 255.8 271 52.8
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.1e-64 251.1 211 64.5
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.2e-63 247.7 230 54.3
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.6e-63 247.3 268 57.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.6e-63 246.1 223 59.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.0e-62 243.0 172 65.7
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.2e-61 241.1 211 60.2
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.1e-59 232.6 188 66.0
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.7e-58 228.4 221 55.7
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.7e-58 228.4 221 55.7
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 6.5e-57 225.3 223 55.6
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.5e-56 223.4 139 74.8
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-55 220.7 219 53.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.7e-52 209.5 230 47.8
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.7e-52 209.5 227 54.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.4e-51 207.6 136 74.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 9.2e-51 204.9 320 43.4
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-50 204.1 185 61.1
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.2e-45 188.0 241 48.5
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.7e-44 184.1 241 46.9
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.0e-41 174.9 117 82.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 8.6e-41 171.8 150 52.7
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.1e-40 171.4 166 53.0
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.2e-37 161.4 137 58.4
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.3e-33 147.9 244 33.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-33 147.9 179 46.9
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.3e-33 147.9 179 46.9
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 3.9e-33 146.4 176 47.2
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 6.6e-33 145.6 187 48.1
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.6e-33 145.6 110 60.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.8e-30 137.5 280 42.1
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 6.8e-30 135.6 310 32.3
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.9e-28 130.2 121 57.9
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-25 120.9 82 79.3
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.6e-21 105.5 96 54.2
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.3e-20 104.8 63 68.3
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.7e-20 104.4 175 43.4
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.7e-20 104.4 83 63.9
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 3.8e-20 103.2 61 67.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 8.4e-20 102.1 99 47.5
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.9e-19 100.9 110 54.5
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 3.2e-19 100.1 61 67.2
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.2e-18 98.2 60 66.7
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.2e-18 98.2 60 66.7
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.2e-18 98.2 63 65.1
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 2.1e-18 97.4 66 57.6
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.7e-17 94.4 61 63.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.1e-16 91.7 108 46.3
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.1e-16 91.7 108 46.3
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-14 84.7 61 57.4
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.4e-14 84.7 61 57.4
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 2.4e-14 84.0 177 36.2
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.5e-13 81.3 80 51.2
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.7e-12 77.8 111 34.2
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.1e-10 70.9 92 50.0
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 6.0e-10 69.3 91 51.6
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.0e-09 67.0 72 52.8
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 1.4e-06 58.2 44 63.6
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 2.4e-06 57.4 71 47.9


User provided reference genes

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