Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 2.4e-107 392.1 191 100.0
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 8.3e-100 367.1 191 93.2
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 3.1e-86 322.0 191 81.7
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.0e-86 321.6 191 81.2
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.2e-79 297.7 178 79.8
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 5.2e-78 294.7 192 76.0
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 9.9e-77 290.4 192 74.5
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 2.8e-71 272.3 188 71.3
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 6.2e-71 271.2 193 71.0
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.8e-70 269.6 193 70.5
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 6.9e-70 267.7 191 71.2
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 4.9e-68 261.5 195 70.3
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 4.9e-68 261.5 191 70.2
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.0e-65 253.8 191 67.5
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.6e-64 248.1 173 73.4
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.6e-47 193.4 194 54.6
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 3.1e-46 189.1 189 54.5
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 4.1e-46 188.7 185 54.6
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 9.0e-46 187.6 185 54.1
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 2.0e-45 186.4 189 54.0
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.4e-45 185.7 185 53.5
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 4.5e-45 185.3 185 53.0
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.9e-44 182.6 191 52.4
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.8e-44 182.2 189 54.5
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 6.5e-44 181.4 185 51.4
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 6.5e-44 181.4 186 52.7
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 8.5e-44 181.0 189 51.9
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.5e-44 181.0 186 53.8
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.1e-43 180.6 189 52.4
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 2.5e-43 179.5 189 50.8
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 2.5e-43 179.5 190 50.5
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.2e-43 179.1 185 53.0
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 3.2e-43 179.1 193 50.8
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 4.2e-43 178.7 191 51.8
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.2e-43 178.7 185 51.4
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 5.5e-43 178.3 187 51.3
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 7.2e-43 177.9 189 52.4
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 7.2e-43 177.9 185 51.4
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 9.3e-43 177.6 187 48.7
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.3e-43 177.6 185 51.4
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 1.2e-42 177.2 189 51.3
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.1e-42 176.4 185 50.8
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.1e-42 176.4 193 51.3
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.6e-42 175.3 186 49.5
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 6.1e-42 174.9 190 51.1
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.1e-42 174.9 185 51.4
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 7.9e-42 174.5 193 51.8
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.9e-42 174.5 189 49.7
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.0e-41 174.1 189 51.3
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.3e-41 173.7 183 50.8
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.3e-41 173.7 190 50.0
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-41 173.3 191 50.8
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.3e-41 172.9 189 50.8
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.3e-41 172.9 191 49.2
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 3.0e-41 172.6 185 49.2
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 2.5e-40 169.5 189 49.7
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 3.3e-40 169.1 189 48.7
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.4e-40 167.9 185 50.3
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.4e-40 167.9 185 50.3
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.3e-39 167.2 191 49.7
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.3e-39 167.2 189 48.7
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.6e-39 166.8 192 49.0
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 2.8e-39 166.0 189 47.6
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.7e-39 165.6 192 48.4
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 4.8e-39 165.2 186 48.9
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 8.2e-39 164.5 185 49.7
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 1.4e-38 163.7 183 47.5
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.4e-38 163.7 190 48.9
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.4e-38 162.9 190 46.3
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 6.9e-38 161.4 191 45.0
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 9.1e-38 161.0 191 47.6
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 9.1e-38 161.0 189 44.4
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-37 160.6 188 48.4
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.2e-37 160.6 188 48.4
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 2.0e-37 159.8 186 48.9
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.6e-37 159.5 191 48.2
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.4e-37 159.1 188 48.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.9e-37 158.3 199 47.2
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.7e-37 157.9 193 45.6
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.7e-36 156.8 183 45.9
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.2e-36 156.4 185 45.9
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.2e-36 156.4 183 46.4
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 5.0e-36 155.2 191 45.0
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.0e-36 155.2 185 44.3
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.0e-36 155.2 185 44.3
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 5.0e-36 155.2 189 45.0
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 6.5e-36 154.8 172 50.6
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.1e-35 154.1 189 47.1
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.1e-35 154.1 169 50.3
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 1.1e-35 154.1 189 44.4
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 2.5e-35 152.9 191 45.0
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.5e-35 152.9 190 46.3
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 5.5e-35 151.8 185 42.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 7.2e-35 151.4 183 43.7
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.4e-35 151.0 192 45.3
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.2e-34 150.6 191 44.0
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 1.6e-34 150.2 191 44.0
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.6e-34 150.2 189 45.0
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 2.7e-34 149.4 185 43.2
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 3.6e-34 149.1 185 44.9
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 4.6e-34 148.7 190 45.3
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 4.6e-34 148.7 183 43.7
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 4.6e-34 148.7 185 44.3
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 6.1e-34 148.3 189 43.9
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.8e-33 146.7 183 42.1
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 3.9e-33 145.6 192 43.8
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.9e-33 145.6 188 47.3
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.1e-32 144.1 159 51.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.1e-32 144.1 193 45.6
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 3.3e-32 142.5 192 43.2
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 9.7e-32 141.0 191 42.4
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.7e-31 140.2 192 44.8
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 1.7e-31 140.2 181 46.4
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.2e-31 139.8 191 44.0
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 2.8e-31 139.4 181 44.8
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.8e-31 139.4 157 51.0
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.3e-31 138.3 181 46.4
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 8.2e-31 137.9 182 44.5
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 8.2e-31 137.9 182 44.5
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 1.1e-30 137.5 189 42.3
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.1e-30 137.5 181 44.8
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 2.4e-30 136.3 189 42.3
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 3.1e-30 136.0 181 45.3
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 4.1e-30 135.6 192 43.2
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 4.1e-30 135.6 181 44.8
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 4.1e-30 135.6 181 44.8
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 4.1e-30 135.6 181 44.8
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.3e-30 135.2 192 41.7
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.2e-29 134.0 195 40.5
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.5e-29 133.7 181 44.2
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.4e-29 132.5 181 44.2
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.4e-29 132.5 181 38.7
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.0e-28 131.0 179 41.9
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.7e-28 130.2 185 41.6
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 6.5e-28 128.3 198 38.9
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.9e-27 126.7 180 39.4
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.9e-27 126.7 152 46.7
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.5e-27 126.3 189 42.3
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.2e-26 124.0 189 37.6
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 4.7e-26 122.1 144 46.5
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.4e-25 120.6 211 35.1
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.7e-25 118.2 189 40.7
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 9.7e-24 114.4 138 45.7
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.2e-23 111.3 140 45.0
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-21 107.1 74 70.3
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.0e-20 104.4 123 43.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.2e-20 103.2 104 56.7
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 3.8e-20 102.4 205 33.7
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 5.5e-19 98.6 189 38.1
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.6e-18 95.9 153 37.9
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-17 93.6 84 56.0
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.0e-17 92.8 87 55.2
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 5.2e-17 92.0 187 31.6
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.3e-15 87.4 190 33.2
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.7e-15 87.0 186 32.3
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.7e-15 87.0 192 32.8
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.1e-14 84.3 79 53.2
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.8e-14 83.6 93 49.5
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.3e-14 82.0 76 56.6
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.0e-12 77.8 56 60.7
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.3e-12 77.4 75 53.3
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.5e-11 73.9 74 54.1
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 2.6e-08 63.2 69 46.4


User provided reference genes

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