Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 0.0e+00 1733.0 860 100.0
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 0.0e+00 1480.7 861 86.2
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1473.4 863 86.0
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1471.1 885 83.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 0.0e+00 1439.9 879 83.4
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 0.0e+00 1202.6 866 71.1
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 5.5e-292 1007.7 868 61.8
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 7.6e-286 987.3 868 60.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.9e-284 982.6 868 60.4
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.4e-279 966.5 866 58.8
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.2e-276 954.1 869 59.5
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 5.1e-274 948.0 867 58.5
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 6.9e-271 937.6 871 58.4
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 9.1e-271 937.2 871 57.7
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.9e-270 934.5 862 58.0
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 5.2e-266 921.4 867 57.0
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.6e-265 919.1 859 57.0
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 7.4e-265 917.5 869 55.8
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.3e-263 911.4 874 56.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 9.1e-263 910.6 874 55.9
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.6e-262 909.1 566 82.5
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.2e-260 901.7 874 55.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.5e-254 882.1 879 55.1
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 8.5e-253 877.5 870 54.4
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.1e-252 877.1 870 54.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.9e-252 876.3 870 54.3
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 5.5e-252 874.8 870 54.5
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 9.4e-252 874.0 637 71.0
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.6e-251 872.1 870 54.0
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.1e-243 846.3 870 53.3
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 8.3e-240 834.3 892 51.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.8e-239 833.2 877 51.9
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.3e-237 827.0 892 51.9
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 5.0e-237 825.1 891 51.2
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.1e-236 823.9 891 52.3
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-236 823.5 872 52.3
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.5e-236 823.5 872 52.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 3.3e-236 822.4 872 53.8
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 8.0e-235 817.8 892 52.4
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.0e-234 815.5 892 52.1
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.4e-232 808.1 882 51.6
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 5.4e-231 805.1 874 51.3
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-228 796.6 856 51.6
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.8e-226 790.0 890 50.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.5e-225 786.9 878 51.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.0e-225 786.6 854 50.6
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.2e-223 779.2 914 48.2
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.7e-222 776.2 885 49.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-221 774.2 852 51.8
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 2.8e-219 766.1 876 48.9
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.1e-218 764.2 858 50.2
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.0e-217 760.0 850 50.0
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 2.0e-217 760.0 875 50.3
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.0e-217 760.0 901 48.4
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 3.4e-217 759.2 860 48.5
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.4e-217 758.8 745 55.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.2e-214 750.7 860 48.6
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 7.8e-214 748.0 862 47.9
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 8.6e-213 744.6 869 47.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.1e-212 744.2 870 47.6
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 3.3e-212 742.7 853 49.7
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.3e-212 742.3 870 49.2
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-211 740.7 885 47.5
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.1e-211 740.0 883 48.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 2.1e-211 740.0 861 47.7
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.3e-210 736.5 850 49.6
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 2.3e-210 736.5 853 49.7
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.3e-210 736.5 885 47.3
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 4.0e-210 735.7 867 48.1
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 6.8e-210 734.9 857 48.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.5e-209 733.8 921 46.8
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.4e-209 732.6 857 48.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.4e-209 732.3 866 47.7
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.4e-207 727.2 963 45.8
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 9.2e-207 724.5 783 49.8
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.6e-206 722.2 818 49.9
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.0e-206 721.8 855 48.4
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.0e-206 721.8 855 48.4
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.0e-205 721.1 864 46.5
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 6.6e-205 718.4 864 48.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-204 717.6 873 47.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-204 717.2 736 53.0
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 3.3e-204 716.1 880 46.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.2e-203 714.1 929 46.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.1e-203 713.4 874 46.8
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 6.2e-203 711.8 875 46.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 8.1e-203 711.4 868 46.8
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.2e-201 707.6 751 51.8
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 9.9e-201 704.5 856 47.8
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.1e-199 701.0 851 47.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 2.1e-198 696.8 866 49.1
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.7e-198 696.4 868 46.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.0e-197 694.5 870 45.9
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.3e-197 694.1 849 47.3
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 4.3e-196 689.1 864 46.9
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 4.3e-196 689.1 864 46.9
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 7.3e-196 688.3 868 44.0
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 3.1e-194 682.9 867 46.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.5e-185 654.1 885 44.0
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.5e-182 642.9 676 53.4
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.3e-181 640.2 772 49.7
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.5e-180 636.7 812 46.7
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 2.1e-179 633.6 904 43.3
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 7.1e-175 618.6 601 55.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.5e-169 599.4 741 46.8
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.1e-167 594.7 882 41.4
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.9e-162 575.5 708 46.2
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 7.7e-161 572.0 860 41.3
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.6e-158 563.1 667 48.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.4e-156 556.2 611 49.4
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.0e-141 506.5 633 46.0
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.2e-141 506.1 690 43.6
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.3e-139 501.5 879 39.6
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 3.5e-129 466.8 507 52.9
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.5e-129 466.5 560 48.6
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.1e-118 431.0 548 47.3
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-117 427.6 315 70.2
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 6.4e-107 392.9 355 55.8
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.2e-106 390.6 571 41.7
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 5.2e-101 373.2 658 36.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.6e-94 351.7 552 39.7
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 9.9e-92 342.4 372 52.4
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.7e-91 341.7 490 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 3.2e-90 337.4 983 29.9
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.5e-87 328.6 650 36.9
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.2e-84 318.9 179 89.9
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 8.1e-78 296.2 673 32.2
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 2.9e-75 287.7 639 32.1
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 8.4e-75 286.2 466 39.9
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.4e-74 285.4 215 67.9
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-73 282.3 521 35.9
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 2.8e-70 271.2 478 38.7
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 8.4e-67 259.6 199 68.8
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 3.9e-64 250.8 188 71.8
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 8.2e-62 243.0 331 46.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.1e-61 242.7 187 65.2
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-58 232.6 213 59.6
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.1e-53 214.2 300 44.3
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.3e-51 209.1 172 59.3
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.1e-50 206.1 173 64.2
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.6e-49 201.1 132 68.9
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 1.7e-43 182.2 255 45.5
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-41 175.6 163 57.7
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.8e-40 172.2 163 55.8
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 5.1e-40 170.6 194 50.0
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.5e-39 169.1 123 68.3
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.3e-38 166.0 115 67.8
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 8.2e-38 163.3 115 66.1
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.4e-37 162.5 114 67.5
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 5.3e-37 160.6 154 56.5
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 5.3e-37 160.6 193 44.0
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 7.7e-36 156.8 153 56.2
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 7.7e-36 156.8 153 56.2
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 9.4e-34 149.8 153 52.9
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.7e-33 148.3 99 73.7
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.0e-32 146.4 148 54.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-32 145.6 97 73.2
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 2.6e-31 141.7 1106 22.3
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-29 136.0 102 66.7
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.2e-25 122.9 283 30.0
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.1e-25 120.6 271 31.7
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 1.4e-24 119.4 305 28.2
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 5.7e-23 114.0 71 81.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.3e-22 110.5 100 56.0
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.1e-21 108.2 168 42.9
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 2.0e-20 105.5 308 27.9
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 1.3e-19 102.8 80 60.0
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 3.8e-19 101.3 202 35.1
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.2e-15 89.7 118 46.6
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 4.8e-14 84.3 63 71.4
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.4e-13 82.8 80 56.2
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-12 79.7 64 65.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.7e-12 77.0 56 64.3
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 9.5e-10 70.1 90 48.9
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.2e-09 69.7 49 65.3
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 1.6e-09 69.3 233 26.6
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 8.0e-09 67.0 142 31.7
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.0e-08 64.7 70 51.4
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.5e-07 62.8 158 30.4
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 3.4e-07 61.6 34 76.5
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.7e-07 60.8 49 57.1


User provided reference genes

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