Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 3.0e-84 315.1 152 100.0
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 2.2e-39 166.0 89 86.5
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 2.9e-39 165.6 87 87.4
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.5e-38 163.3 84 85.7
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.2e-37 160.2 89 82.0
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.2e-37 160.2 89 82.0
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 2.7e-37 159.1 89 82.0
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 2.7e-37 159.1 89 82.0
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 5.0e-31 138.3 89 70.8
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.2e-30 134.4 90 63.3
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.7e-29 132.5 89 65.2
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 3.6e-29 132.1 90 68.9
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 6.1e-29 131.3 89 65.2
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 8.0e-29 131.0 89 64.0
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.0e-28 130.6 103 56.3
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.4e-28 130.2 89 65.2
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 3.0e-28 129.0 88 64.8
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 4.0e-28 128.6 86 64.0
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.2e-28 128.3 89 66.3
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 8.8e-28 127.5 90 63.3
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 8.8e-28 127.5 106 56.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 2.6e-27 125.9 89 60.7
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.6e-27 125.9 89 62.9
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 3.4e-27 125.6 89 64.0
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 5.7e-27 124.8 89 61.8
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.5e-27 124.4 98 58.2
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 7.5e-27 124.4 86 61.6
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 7.5e-27 124.4 89 60.7
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 9.8e-27 124.0 87 62.1
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 1.3e-26 123.6 89 62.9
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.2e-26 122.9 89 61.8
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 2.2e-26 122.9 84 66.7
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 2.8e-26 122.5 89 57.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 2.8e-26 122.5 89 60.7
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 2.8e-26 122.5 103 52.4
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 3.7e-26 122.1 89 57.3
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 3.7e-26 122.1 94 62.8
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 6.3e-26 121.3 99 53.5
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 6.3e-26 121.3 89 62.9
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.4e-25 120.2 89 56.2
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.4e-25 120.2 89 60.7
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.8e-25 119.8 89 56.2
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.8e-25 119.8 89 56.2
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.8e-25 119.8 88 60.2
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 2.4e-25 119.4 89 57.3
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 2.4e-25 119.4 92 57.6
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 3.1e-25 119.0 89 58.4
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 3.1e-25 119.0 89 56.2
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 4.1e-25 118.6 111 46.8
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 4.1e-25 118.6 96 60.4
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 5.4e-25 118.2 114 45.6
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 7.0e-25 117.9 117 50.4
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 1.2e-24 117.1 89 53.9
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.2e-24 117.1 84 61.9
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.2e-24 117.1 84 61.9
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 2.0e-24 116.3 90 60.0
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 2.0e-24 116.3 93 55.9
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 2.7e-24 115.9 90 58.9
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 3.5e-24 115.5 82 64.6
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 4.5e-24 115.2 89 57.3
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 4.5e-24 115.2 91 57.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 7.7e-24 114.4 87 59.8
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.0e-23 114.0 125 46.4
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.0e-23 114.0 86 58.1
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.3e-23 113.6 90 57.8
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.3e-23 113.6 89 55.1
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 1.7e-23 113.2 90 54.4
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.7e-23 113.2 84 56.0
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 2.2e-23 112.8 89 55.1
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 2.9e-23 112.5 88 54.5
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.9e-23 112.5 89 57.3
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.9e-23 112.5 88 51.1
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 3.8e-23 112.1 88 54.5
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.8e-23 112.1 70 70.0
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 6.5e-23 111.3 88 55.7
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 6.5e-23 111.3 89 56.2
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 6.5e-23 111.3 89 56.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 6.5e-23 111.3 85 61.2
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.5e-22 109.4 89 52.8
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.5e-22 109.4 89 52.8
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 3.2e-22 109.0 106 50.0
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 5.5e-22 108.2 88 54.5
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 5.5e-22 108.2 88 50.0
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.6e-21 106.7 83 56.6
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.6e-21 106.7 83 56.6
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.8e-21 105.9 83 55.4
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 2.8e-21 105.9 90 54.4
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.6e-21 105.5 84 58.3
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.7e-21 105.1 80 57.5
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 4.7e-21 105.1 83 57.8
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 8.0e-21 104.4 81 55.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.4e-20 103.6 83 55.4
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.4e-20 103.6 81 56.8
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.8e-20 103.2 83 56.6
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.3e-20 102.8 81 54.3
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 2.3e-20 102.8 85 55.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 3.0e-20 102.4 85 54.1
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 6.8e-20 101.3 90 48.9
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 8.8e-20 100.9 91 50.5
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 8.8e-20 100.9 91 50.5
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 8.8e-20 100.9 81 54.3
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.5e-19 100.1 87 51.7
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.5e-19 100.1 70 60.0
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.5e-19 100.1 84 51.2
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.5e-19 100.1 91 49.5
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 2.0e-19 99.8 90 53.3
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 2.0e-19 99.8 81 53.1
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 4.4e-19 98.6 91 49.5
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 4.4e-19 98.6 91 49.5
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.2e-16 90.5 56 69.6
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.0e-16 89.7 91 47.3
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.9e-15 85.9 81 48.1
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 3.8e-15 85.5 56 66.1
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 8.6e-15 84.3 56 67.9
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 2.5e-14 82.8 107 40.2
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.3e-14 82.4 80 47.5
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 9.5e-14 80.9 91 39.6
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 2.8e-13 79.3 84 44.0
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 6.1e-13 78.2 71 46.5
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 1.4e-12 77.0 62 58.1
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 6.8e-12 74.7 92 40.2
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 1.2e-11 73.9 61 55.7
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 4.4e-11 72.0 62 53.2
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.3e-10 70.5 62 53.2
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 1.7e-10 70.1 40 75.0
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.7e-10 70.1 58 53.4
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.9e-10 69.3 56 58.9
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.7e-10 68.9 110 42.7
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 8.3e-10 67.8 58 50.0
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.1e-09 67.4 85 35.3
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.1e-09 67.4 85 35.3
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.4e-09 67.0 71 42.3
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-09 67.0 58 44.8
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-09 67.0 58 44.8
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.4e-09 67.0 58 44.8
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 1.4e-09 67.0 57 52.6
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.4e-09 67.0 57 52.6
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 4.1e-09 65.5 68 36.8
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 9.2e-09 64.3 60 45.0
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 9.2e-09 64.3 71 40.8
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 9.2e-09 64.3 56 50.0
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 9.2e-09 64.3 68 39.7
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.6e-08 63.5 59 45.8
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 2.7e-08 62.8 62 45.2
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 1.3e-07 60.5 56 44.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.0e-07 59.3 55 49.1
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 5.0e-07 58.5 56 44.6
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 8.6e-07 57.8 55 43.6
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 8.6e-07 57.8 56 41.1
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.5e-06 57.0 56 44.6
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 3.3e-06 55.8 56 46.4
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 7.3e-06 54.7 26 80.8
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.3e-06 54.7 53 49.1


User provided reference genes

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