Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.7e-67 258.8 162 100.0
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.6e-51 204.9 159 86.8
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.4e-39 166.0 161 72.0
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.9e-39 164.5 161 68.9
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-38 163.7 161 74.5
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 9.7e-33 144.1 171 53.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.8e-32 142.5 168 54.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.6e-30 136.7 176 55.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-29 134.0 82 81.7
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 5.0e-29 131.7 163 49.1
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 8.5e-29 131.0 75 84.0
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.5e-28 129.4 82 79.3
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.2e-28 129.0 81 77.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 4.2e-28 128.6 81 77.8
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 9.4e-28 127.5 81 76.5
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 9.4e-28 127.5 81 76.5
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.1e-27 126.3 81 75.3
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.7e-27 125.9 165 47.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 4.7e-27 125.2 81 76.5
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 4.7e-27 125.2 81 76.5
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 4.7e-27 125.2 151 49.7
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 6.1e-27 124.8 81 75.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 8.0e-27 124.4 72 81.9
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.4e-26 123.6 83 73.5
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.8e-26 123.2 81 75.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.8e-26 123.2 79 75.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.8e-26 123.2 80 76.2
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 4.0e-26 122.1 71 80.3
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 5.2e-26 121.7 81 72.8
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 6.7e-26 121.3 166 46.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.1e-25 120.6 72 75.0
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.5e-25 120.2 71 78.9
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.5e-25 120.2 71 77.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.0e-25 119.8 71 77.5
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.0e-25 119.8 72 76.4
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.0e-25 119.8 71 77.5
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.6e-25 119.4 72 73.6
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.6e-25 119.4 147 50.3
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 3.3e-25 119.0 81 70.4
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.4e-25 118.6 81 70.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 4.4e-25 118.6 72 76.4
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 7.5e-25 117.9 68 76.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 7.5e-25 117.9 81 70.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 7.5e-25 117.9 81 70.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 9.7e-25 117.5 71 76.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 9.7e-25 117.5 71 76.1
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.7e-24 116.7 81 69.1
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.7e-24 116.7 81 69.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 2.2e-24 116.3 72 69.4
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.2e-24 116.3 71 76.1
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.8e-24 115.9 163 45.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 2.8e-24 115.9 71 73.2
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 2.8e-24 115.9 70 74.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.7e-24 115.5 72 70.8
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 3.7e-24 115.5 68 77.9
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 3.7e-24 115.5 81 70.4
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 4.8e-24 115.2 152 46.1
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 8.2e-24 114.4 70 74.3
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.1e-23 114.0 70 72.9
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-23 114.0 142 50.0
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.1e-23 114.0 72 73.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.4e-23 113.6 78 69.2
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.4e-23 113.6 72 70.8
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.8e-23 113.2 68 76.5
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.4e-23 112.8 70 72.9
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.4e-23 112.8 71 71.8
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 2.4e-23 112.8 72 69.4
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.4e-23 112.8 69 73.9
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.4e-23 112.8 81 65.4
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.4e-23 112.8 67 76.1
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 3.1e-23 112.5 70 72.9
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 4.1e-23 112.1 80 66.2
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 4.1e-23 112.1 71 73.2
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 5.3e-23 111.7 71 73.2
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 5.3e-23 111.7 160 45.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 7.0e-23 111.3 70 70.0
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 7.0e-23 111.3 70 70.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.0e-23 111.3 70 70.0
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 7.0e-23 111.3 67 73.1
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 7.0e-23 111.3 68 76.5
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 9.1e-23 110.9 71 71.8
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 9.1e-23 110.9 160 50.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-22 110.5 70 72.9
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-22 110.5 70 72.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.2e-22 110.5 70 72.9
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.6e-22 110.2 70 72.9
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.0e-22 109.8 71 70.4
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 2.7e-22 109.4 163 49.7
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 3.5e-22 109.0 72 65.3
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 3.5e-22 109.0 70 71.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.5e-22 109.0 71 70.4
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 4.5e-22 108.6 71 63.4
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 4.5e-22 108.6 79 64.6
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 5.9e-22 108.2 67 70.1
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.0e-21 107.5 71 64.8
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.0e-21 107.5 70 64.3
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.7e-21 106.7 67 68.7
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.9e-21 105.9 71 67.6
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.8e-21 105.5 72 65.3
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 5.0e-21 105.1 80 62.5
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.0e-21 105.1 67 68.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.5e-20 103.6 71 66.2
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.2e-20 102.1 67 67.2
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.2e-19 100.5 67 65.7
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.7e-19 99.4 81 60.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-18 97.4 72 72.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.0e-18 97.4 77 55.8
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.8e-18 96.7 68 63.2
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.8e-18 96.7 70 64.3
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-18 96.3 70 64.3
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 3.0e-18 95.9 70 62.9
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 3.0e-18 95.9 70 62.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 9.8e-17 90.9 64 64.1
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.3e-16 90.5 76 55.3
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.2e-16 89.7 72 54.2
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 4.8e-16 88.6 73 53.4
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.1e-15 87.4 53 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 9.1e-15 84.3 74 52.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.3e-13 80.5 67 50.7
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.9e-12 76.6 72 50.0
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.5e-09 67.0 68 41.2
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.3e-08 63.9 47 68.1
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.2e-08 63.2 57 45.6
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 7.0e-07 58.2 56 50.0


User provided reference genes

Program Settings