Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.2e-43 177.9 85 100.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-35 151.8 74 100.0
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.5e-19 97.4 99 58.6
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 3.0e-17 91.7 52 88.5
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 5.1e-17 90.9 51 90.2
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 8.7e-17 90.1 55 83.6
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-16 89.4 49 93.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-16 89.4 52 84.6
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.9e-16 89.0 50 90.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.9e-16 89.0 53 84.9
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.3e-16 87.8 49 91.8
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.7e-16 87.4 50 88.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 5.7e-16 87.4 49 89.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 7.4e-16 87.0 49 89.8
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 7.4e-16 87.0 49 89.8
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 87.8
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 87.8
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 87.8
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 87.8
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 9.7e-16 86.7 52 82.7
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 9.7e-16 86.7 49 89.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.3e-15 86.3 49 87.8
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-15 86.3 52 80.8
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.3e-15 86.3 49 87.8
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.6e-15 85.9 49 87.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.6e-15 85.9 49 89.8
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.2e-15 85.5 49 89.8
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.2e-15 85.5 49 87.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.8e-15 85.1 49 89.8
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.8e-15 85.1 49 85.7
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 3.7e-15 84.7 49 87.8
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.7e-15 84.7 50 84.0
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.8e-15 84.3 49 85.7
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.8e-15 84.3 49 87.8
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.8e-15 84.3 49 85.7
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.8e-15 84.3 49 85.7
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 4.8e-15 84.3 49 87.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.3e-15 84.0 49 85.7
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 6.3e-15 84.0 49 85.7
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 6.3e-15 84.0 49 85.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.3e-15 84.0 49 87.8
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 6.3e-15 84.0 48 87.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 8.2e-15 83.6 49 83.7
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 8.2e-15 83.6 49 85.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 8.2e-15 83.6 49 83.7
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 8.2e-15 83.6 49 83.7
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 8.2e-15 83.6 49 85.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-14 83.2 49 83.7
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-14 83.2 49 83.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-14 83.2 49 83.7
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.4e-14 82.8 49 83.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.4e-14 82.8 50 82.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.4e-14 82.0 48 87.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.4e-14 82.0 49 83.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-14 82.0 49 83.7
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-14 82.0 49 83.7
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-14 82.0 49 83.7
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.4e-14 82.0 49 81.6
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.1e-14 81.6 48 87.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.1e-14 81.6 49 83.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 3.1e-14 81.6 49 85.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 4.1e-14 81.3 49 85.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 4.1e-14 81.3 49 85.7
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 5.3e-14 80.9 49 81.6
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.3e-14 80.9 49 85.7
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.9e-14 80.5 49 81.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 6.9e-14 80.5 52 71.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 6.9e-14 80.5 52 71.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.9e-14 80.5 49 79.6
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 6.9e-14 80.5 49 83.7
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 9.0e-14 80.1 49 79.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.2e-13 79.7 49 75.5
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.2e-13 79.7 49 79.6
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-13 79.3 49 83.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.0e-13 79.0 49 79.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.6e-13 78.6 49 77.6
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 3.4e-13 78.2 49 77.6
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 4.5e-13 77.8 49 77.6
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 4.5e-13 77.8 49 77.6
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 4.5e-13 77.8 49 77.6
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.5e-13 77.8 49 77.6
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.5e-13 77.8 49 77.6
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.9e-13 77.4 49 75.5
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.0e-12 76.6 49 81.6
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.0e-12 76.6 45 86.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.3e-12 76.3 48 77.1
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.3e-12 76.3 49 77.6
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.2e-12 75.5 49 73.5
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.2e-12 75.5 54 66.7
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.2e-12 75.5 49 73.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.9e-12 75.1 49 75.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 3.8e-12 74.7 49 69.4
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.0e-12 74.3 42 88.1
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 8.5e-12 73.6 49 73.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.2e-11 71.2 49 67.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 9.4e-11 70.1 49 67.3
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.1e-10 67.4 41 75.6
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.3e-09 65.5 49 65.3
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-09 65.1 35 91.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.5e-08 62.8 37 83.8
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.9e-08 62.4 51 56.9
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.9e-08 62.4 48 62.5
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-08 62.0 32 100.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-06 56.6 39 66.7
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.1e-06 54.7 51 51.0


User provided reference genes

Program Settings