Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-53 211.8 104 100.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 6.0e-28 127.5 103 67.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.0e-28 127.5 103 67.0
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.0e-28 127.5 103 67.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.0e-28 127.5 103 67.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 6.0e-28 127.5 103 67.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.8e-27 125.9 103 66.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.0e-27 125.2 106 63.2
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 65.0
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 65.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 65.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 65.0
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 65.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.9e-27 124.8 104 64.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 3.9e-27 124.8 104 64.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 65.0
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.9e-27 124.8 103 64.1
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 5.1e-27 124.4 103 64.1
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.1e-27 124.4 103 65.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 5.1e-27 124.4 103 65.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 5.1e-27 124.4 103 64.1
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.7e-27 124.0 103 63.1
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 6.7e-27 124.0 103 63.1
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 6.7e-27 124.0 103 63.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 8.7e-27 123.6 103 63.1
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 8.7e-27 123.6 103 64.1
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 8.7e-27 123.6 103 64.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 8.7e-27 123.6 103 64.1
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 8.7e-27 123.6 103 64.1
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 8.7e-27 123.6 103 64.1
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.1e-26 123.2 103 63.1
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.1e-26 123.2 103 63.1
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.1e-26 123.2 103 64.1
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.1e-26 123.2 103 63.1
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.1e-26 123.2 103 63.1
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.1e-26 123.2 107 59.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.1e-26 123.2 103 63.1
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.5e-26 122.9 103 63.1
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.5e-26 122.9 103 63.1
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.5e-26 122.9 103 63.1
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.5e-26 122.9 103 65.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.5e-26 122.1 103 64.1
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.3e-26 121.7 103 64.1
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.3e-26 121.7 103 64.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 3.3e-26 121.7 103 63.1
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.3e-26 121.7 103 64.1
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.3e-26 121.3 103 64.1
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 4.3e-26 121.3 103 63.1
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.3e-26 121.3 120 57.5
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 4.3e-26 121.3 103 63.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.3e-26 121.3 103 65.0
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 4.3e-26 121.3 103 62.1
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 4.3e-26 121.3 103 63.1
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 61.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 62.1
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 62.1
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 5.7e-26 120.9 108 59.3
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 64.1
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 64.1
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 62.1
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 62.1
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 62.1
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-26 120.9 103 62.1
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 7.4e-26 120.6 100 65.0
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 9.6e-26 120.2 103 63.1
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 9.6e-26 120.2 103 60.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 9.6e-26 120.2 120 55.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.3e-25 119.8 102 63.7
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.6e-25 119.4 103 62.1
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-25 119.4 120 56.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-25 119.4 120 56.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.6e-25 119.4 103 63.1
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.1e-25 119.0 103 63.1
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.8e-25 118.6 103 63.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.8e-25 118.6 103 63.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.8e-25 118.6 102 63.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-25 118.2 103 62.1
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-25 118.2 103 62.1
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-25 118.2 103 62.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.7e-25 118.2 103 62.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 3.7e-25 118.2 101 63.4
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 3.7e-25 118.2 118 54.2
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.7e-25 118.2 101 63.4
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.8e-25 117.9 103 61.2
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.8e-25 117.9 103 61.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.8e-25 117.9 103 61.2
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 4.8e-25 117.9 102 61.8
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.2e-25 117.5 103 61.2
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 6.2e-25 117.5 103 62.1
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.2e-25 117.5 103 59.2
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 8.2e-25 117.1 101 63.4
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.4e-24 116.3 103 59.2
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 3.1e-24 115.2 116 54.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.1e-24 115.2 103 62.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.1e-24 115.2 103 60.2
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.1e-24 115.2 101 62.4
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.1e-24 114.8 103 58.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 5.3e-24 114.4 103 57.3
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 5.3e-24 114.4 114 56.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.9e-24 114.0 103 59.2
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 9.0e-24 113.6 99 62.6
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-23 113.2 102 60.8
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.0e-23 112.5 102 57.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-23 112.5 114 55.3
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.6e-23 112.1 102 58.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.6e-23 112.1 102 57.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.6e-23 112.1 102 57.8
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.6e-23 112.1 102 57.8
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-23 112.1 97 61.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.4e-23 111.7 97 61.9
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.4e-23 111.7 126 50.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 4.5e-23 111.3 103 59.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 5.8e-23 110.9 101 58.4
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 7.6e-23 110.5 102 57.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.3e-22 109.8 102 56.9
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.3e-22 109.8 103 59.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.2e-22 109.0 102 56.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.9e-22 108.6 103 56.3
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.8e-22 108.2 106 52.8
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.0e-22 107.8 102 56.9
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 6.5e-22 107.5 101 56.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 6.5e-22 107.5 101 55.4
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.1e-21 106.7 103 53.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.9e-21 105.9 101 54.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.5e-21 104.4 103 53.4
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 9.3e-21 103.6 102 50.0
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-20 102.4 54 92.6
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-20 102.4 88 62.5
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 6.1e-20 100.9 57 84.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.0e-19 100.1 103 52.4
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.8e-19 99.4 75 65.3
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 8.7e-19 97.1 73 68.5
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.7e-18 94.4 96 54.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.3e-17 93.2 58 72.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-17 93.2 54 81.5
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.4e-16 89.0 54 75.9
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.4e-16 89.0 54 75.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.1e-16 88.6 55 70.9
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 5.3e-16 87.8 52 82.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 5.3e-16 87.8 52 82.7
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 9.0e-16 87.0 53 77.4
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.0e-15 85.9 80 57.5
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.5e-15 84.7 78 59.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 5.9e-15 84.3 109 45.0
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.0e-14 83.6 78 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.9e-13 79.3 54 66.7
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.2e-13 78.6 53 66.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.5e-13 77.8 53 69.8
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.1e-12 75.9 103 47.6
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.5e-10 68.9 46 65.2
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 6.3e-09 64.3 56 51.8
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.8e-08 62.8 44 63.6
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 4.5e-07 58.2 53 52.8


User provided reference genes

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