Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 7.1e-72 273.9 142 100.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 4.4e-45 184.9 106 90.6
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-45 184.9 106 90.6
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-45 184.9 106 90.6
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-45 184.9 106 90.6
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 4.4e-45 184.9 106 90.6
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 4.4e-45 184.9 108 86.1
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.2e-44 182.6 109 86.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.8e-44 182.2 109 86.2
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.7e-44 181.8 106 87.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.7e-44 181.8 106 87.7
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.7e-44 181.8 106 87.7
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 4.8e-44 181.4 106 86.8
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 6.3e-44 181.0 106 87.7
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.3e-44 181.0 106 86.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 8.2e-44 180.6 106 85.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 8.2e-44 180.6 106 86.8
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 8.2e-44 180.6 106 86.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.4e-43 179.9 109 85.3
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.4e-43 179.9 106 85.8
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.4e-43 179.9 106 84.9
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-43 179.9 104 88.5
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-43 179.9 104 88.5
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.4e-43 179.9 106 84.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.4e-43 179.9 106 84.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.4e-43 179.9 106 84.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.4e-43 179.9 107 86.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.4e-43 179.9 106 87.7
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.8e-43 179.5 106 85.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.8e-43 179.5 106 85.8
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.8e-43 179.5 104 87.5
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-43 179.5 106 85.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.4e-43 179.1 106 86.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.4e-43 179.1 104 86.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.1e-43 178.7 106 86.8
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.1e-43 178.7 106 86.8
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.1e-43 178.7 104 86.5
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.1e-43 178.7 106 86.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 4.1e-43 178.3 106 84.9
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 4.1e-43 178.3 106 84.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 4.1e-43 178.3 106 85.8
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 4.1e-43 178.3 106 84.9
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 5.3e-43 177.9 134 73.9
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.3e-43 177.9 106 84.9
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.3e-43 177.9 106 84.9
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 6.9e-43 177.6 109 80.7
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 6.9e-43 177.6 106 84.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.2e-42 176.8 106 83.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.2e-42 176.8 106 84.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.5e-42 176.4 106 84.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.5e-42 176.4 106 84.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.5e-42 176.4 109 81.7
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.5e-42 176.4 104 85.6
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.5e-42 176.4 109 83.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-42 176.0 106 84.0
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.6e-42 175.6 109 82.6
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.6e-42 175.6 106 84.9
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.6e-42 175.6 106 84.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-42 175.6 106 83.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-42 175.6 106 83.0
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.6e-42 175.6 106 84.0
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 5.9e-42 174.5 104 83.7
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 5.9e-42 174.5 106 82.1
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.7e-42 174.1 103 85.4
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 7.7e-42 174.1 109 80.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 7.7e-42 174.1 104 83.7
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 7.7e-42 174.1 106 82.1
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 7.7e-42 174.1 106 82.1
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 7.7e-42 174.1 106 82.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 7.7e-42 174.1 106 84.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.0e-41 173.7 109 81.7
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.3e-41 173.3 106 82.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.3e-41 173.3 106 82.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-41 173.3 109 82.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.7e-41 172.9 106 81.1
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.7e-41 172.9 106 83.0
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.2e-41 172.6 106 83.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-41 172.6 123 77.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.2e-41 172.6 106 81.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.2e-41 172.6 103 83.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 2.9e-41 172.2 109 80.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.9e-41 172.2 106 81.1
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.9e-41 172.2 106 82.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.9e-41 172.2 109 80.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-41 172.2 123 77.2
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-41 172.2 123 77.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.9e-41 172.2 106 81.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.8e-41 171.8 106 81.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.8e-41 171.8 106 82.1
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.8e-41 171.8 106 82.1
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 3.8e-41 171.8 106 82.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 5.0e-41 171.4 106 82.1
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.5e-41 171.0 108 81.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.1e-40 170.2 100 85.0
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.4e-40 169.9 106 82.1
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.9e-40 169.5 109 79.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.5e-40 169.1 106 80.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.5e-40 169.1 110 77.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.2e-40 168.7 106 79.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.2e-40 168.3 98 86.7
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 7.2e-40 167.5 110 76.4
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.2e-39 166.8 119 73.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.2e-39 166.8 106 77.4
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.6e-39 166.4 123 72.4
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.6e-39 165.2 106 77.4
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.7e-39 164.9 106 78.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.1e-39 164.5 106 78.3
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.1e-39 164.5 106 78.3
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 6.1e-39 164.5 106 78.3
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-38 163.7 117 76.1
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-38 163.3 106 77.4
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-38 163.3 106 77.4
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-38 163.3 99 82.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.8e-38 162.9 106 77.4
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.3e-38 162.5 106 76.4
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.3e-38 162.5 129 69.0
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 3.0e-38 162.2 106 76.4
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.9e-38 161.8 106 76.4
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.9e-38 161.8 106 77.4
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.9e-38 161.8 117 75.2
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 6.7e-38 161.0 106 76.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 8.8e-38 160.6 106 76.4
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 8.8e-38 160.6 106 76.4
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 8.8e-38 160.6 103 77.7
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.5e-37 159.8 106 74.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-37 159.5 104 75.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-37 159.5 104 76.9
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-37 159.5 90 88.9
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.6e-37 159.1 106 72.6
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.3e-37 158.7 107 76.6
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 7.4e-37 157.5 108 72.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 9.7e-37 157.1 104 75.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.2e-36 156.0 106 72.6
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.8e-36 155.6 106 73.6
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 8.2e-36 154.1 106 69.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.4e-35 152.5 106 70.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-35 152.1 113 68.1
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.6e-34 149.1 106 69.8
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-32 143.7 81 86.4
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.9e-32 142.9 161 52.2
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.2e-32 142.1 79 89.9
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 5.5e-32 141.4 79 87.3
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.2e-32 141.0 98 74.5
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 6.1e-31 137.9 108 69.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-30 136.3 79 89.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.8e-30 136.3 83 80.7
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 9.7e-29 130.6 105 61.9
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.5e-25 117.9 82 69.5
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 8.5e-25 117.5 83 66.3
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-23 113.6 73 78.1
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 4.7e-23 111.7 102 60.8
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.6e-21 105.9 83 63.9
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-19 100.5 74 64.9
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-16 90.5 64 67.2
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-15 86.3 65 66.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.3e-14 82.8 49 85.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.3e-14 82.8 49 85.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 8.9e-14 80.9 45 84.4
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 5.7e-13 78.2 109 49.5
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.2e-12 76.3 80 47.5
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 4.5e-10 68.6 102 40.2


User provided reference genes

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