Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0471561 Rosa chinensis HOM05D000578 ORTHO05D000422 6.1e-91 337.4 164 100.0
RcHm_v2.0_Chr5g0029541 Rosa chinensis HOM05D000578 ORTHO05D000422 1.1e-34 150.6 98 79.6
FAN21G3080 Fragaria x ananassa HOM05D000578 ORTHO05D000422 2.1e-30 136.3 98 71.4
FAN11G1029 Fragaria x ananassa HOM05D000578 ORTHO05D000422 1.1e-28 130.6 100 70.0
FvH4_3g17750 Fragaria vesca HOM05D000578 ORTHO05D000422 1.9e-28 129.8 100 70.0
FAN16G1193 Fragaria x ananassa HOM05D000578 ORTHO05D000422 3.3e-28 129.0 100 69.0
FAN25G0238 Fragaria x ananassa HOM05D000578 ORTHO05D000422 8.1e-27 124.4 102 66.7
TWI39G0909 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 2.3e-21 106.3 143 48.3
Solyc07g062160.3 Solanum lycopersicum HOM05D000578 ORTHO05D000422 1.1e-20 104.0 157 45.2
Dinv13364 Davidia involucrata HOM05D000578 ORTHO05D000422 1.5e-20 103.6 140 46.4
QL08p024210 Quercus lobata HOM05D000578 ORTHO05D000422 5.6e-20 101.7 139 41.0
Hma1.2p1_0050F.1_g028790 Hydrangea macrophylla HOM05D000578 ORTHO05D000422 7.3e-20 101.3 139 45.3
Atru.chr2.1973 Acer truncatum HOM05D000578 ORTHO05D000422 1.2e-19 100.5 148 45.3
Atru.chr2.1936 Acer truncatum HOM05D000578 ORTHO05D000422 1.6e-19 100.1 148 45.9
CSS0036169 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 1.6e-19 100.1 139 44.6
Manes.15G098000 Manihot esculenta HOM05D000578 ORTHO05D000422 1.6e-19 100.1 141 45.4
Sopen07g030440 Solanum pennellii HOM05D000578 ORTHO05D000422 2.8e-19 99.4 157 43.9
Nitab4.5_0003230g0030 Nicotiana tabacum HOM05D000578 ORTHO05D000422 3.6e-19 99.0 146 45.2
Ciclev10021488m.g Citrus clementina HOM05D000578 ORTHO05D000422 6.2e-19 98.2 139 41.0
Cfa019515 Carpinus fangiana HOM05D000578 ORTHO05D000422 1.1e-18 97.4 139 40.3
Sc03g0010700 Simmondsia chinensis HOM05D000578 ORTHO05D000422 1.1e-18 97.4 139 45.3
Nitab4.5_0000347g0020 Nicotiana tabacum HOM05D000578 ORTHO05D000422 1.8e-18 96.7 146 44.5
PGSC0003DMG400007061 Solanum tuberosum HOM05D000578 ORTHO05D000422 1.8e-18 96.7 157 43.3
Potri.011G105400 Populus trichocarpa HOM05D000578 ORTHO05D000422 3.1e-18 95.9 140 42.9
Sc16g0007740 Simmondsia chinensis HOM05D000578 ORTHO05D000422 6.8e-18 94.7 168 37.5
Dinv26708 Davidia involucrata HOM05D000578 ORTHO05D000422 8.9e-18 94.4 142 43.0
Potri.001G384000 Populus trichocarpa HOM05D000578 ORTHO05D000422 8.9e-18 94.4 141 43.3
TWI38G0071 Tripterygium wilfordii HOM05D000578 ORTHO05D000422 2.0e-17 93.2 139 40.3
CAN.G375.50 Capsicum annuum HOM05D000578 ORTHO05D000422 2.6e-17 92.8 156 41.7
Peaxi162Scf00111g01322 Petunia axillaris HOM05D000578 ORTHO05D000422 3.4e-17 92.4 143 42.0
Sabra11G0075200 Salix brachista HOM05D000578 ORTHO05D000422 3.4e-17 92.4 142 40.1
Actinidia39421 Actinidia chinensis HOM05D000578 ORTHO05D000422 5.8e-17 91.7 139 42.4
Cpa.g.sc77.61 Carica papaya HOM05D000578 ORTHO05D000422 7.6e-17 91.3 139 40.3
CiPaw.11G155800 Carya illinoinensis HOM05D000578 ORTHO05D000422 2.2e-16 89.7 138 36.2
MD11G1269800 Malus domestica HOM05D000578 ORTHO05D000422 2.2e-16 89.7 101 53.5
PSO675G0984 Papaver somniferum HOM05D000578 ORTHO05D000422 2.2e-16 89.7 139 41.0
Lj1A824G61 Lonicera japonica HOM05D000578 ORTHO05D000422 2.9e-16 89.4 137 40.1
PSO541G0141 Papaver somniferum HOM05D000578 ORTHO05D000422 2.9e-16 89.4 140 38.6
Cc05_g10720 Coffea canephora HOM05D000578 ORTHO05D000422 6.4e-16 88.2 138 40.6
Sabra11G0080700 Salix brachista HOM05D000578 ORTHO05D000422 6.4e-16 88.2 141 39.0
Thecc.07G132800 Theobroma cacao HOM05D000578 ORTHO05D000422 6.4e-16 88.2 138 39.1
Rhsim06G0211700 Rhododendron simsii HOM05D000578 ORTHO05D000422 8.4e-16 87.8 141 40.4
Gohir.A01G047800 Gossypium hirsutum HOM05D000578 ORTHO05D000422 1.1e-15 87.4 138 39.1
PGR083G2431 Punica granatum HOM05D000578 ORTHO05D000422 2.4e-15 86.3 139 38.8
Haze_09247 Corylus avellana HOM05D000578 ORTHO05D000422 3.2e-15 85.9 159 38.4
Gohir.D01G038400 Gossypium hirsutum HOM05D000578 ORTHO05D000422 3.2e-15 85.9 138 38.4
Gorai.002G047200 Gossypium raimondii HOM05D000578 ORTHO05D000422 3.2e-15 85.9 138 38.4
Gohir.D11G303000 Gossypium hirsutum HOM05D000578 ORTHO05D000422 4.2e-15 85.5 141 40.4
Gorai.007G331700 Gossypium raimondii HOM05D000578 ORTHO05D000422 4.2e-15 85.5 141 40.4
Nitab4.5_0000092g0380 Nicotiana tabacum HOM05D000578 ORTHO05D000422 4.2e-15 85.5 139 38.8
TAR624G1389 Trochodendron aralioides HOM05D000578 ORTHO05D000422 4.2e-15 85.5 136 39.0
TAR626G1594 Trochodendron aralioides HOM05D000578 ORTHO05D000422 4.2e-15 85.5 139 39.6
vmacro11970 Vaccinium macrocarpon HOM05D000578 ORTHO05D000422 4.2e-15 85.5 149 40.3
CiPaw.12G110700 Carya illinoinensis HOM05D000578 ORTHO05D000422 5.4e-15 85.1 155 41.3
CANSAT56G3981 Cannabis sativa HOM05D000578 ORTHO05D000422 9.2e-15 84.3 141 40.4
GSVIVG01014097001 Vitis vinifera HOM05D000578 ORTHO05D000422 9.2e-15 84.3 142 42.3
AUR62039579 Chenopodium quinoa HOM05D000578 ORTHO05D000422 1.2e-14 84.0 167 36.5
Manes.03G085600 Manihot esculenta HOM05D000578 ORTHO05D000422 1.2e-14 84.0 138 37.7
Nitab4.5_0002943g0010 Nicotiana tabacum HOM05D000578 ORTHO05D000422 1.2e-14 84.0 139 38.1
CSS0037476 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 1.6e-14 83.6 139 38.1
CSS0046793 Camellia sinensis var. sinensis HOM05D000578 ORTHO05D000422 1.6e-14 83.6 139 38.1
Hund10434 Selenicereus undatus HOM05D000578 ORTHO05D000422 2.1e-14 83.2 167 33.5
Duzib213G1040 Durio zibethinus HOM05D000578 ORTHO05D000422 3.5e-14 82.4 148 43.2
Actinidia12603 Actinidia chinensis HOM05D000578 ORTHO05D000422 6.0e-14 81.6 136 40.4
Gohir.A11G289400 Gossypium hirsutum HOM05D000578 ORTHO05D000422 6.0e-14 81.6 141 39.0
Aqoxy1G01904 Aquilegia oxysepala HOM05D000578 ORTHO05D000422 7.8e-14 81.3 140 38.6
AUR62019649 Chenopodium quinoa HOM05D000578 ORTHO05D000422 1.3e-13 80.5 167 34.1
Eucgr.F01367 Eucalyptus grandis HOM05D000578 ORTHO05D000422 1.3e-13 80.5 141 36.9
Duzib268G1026 Durio zibethinus HOM05D000578 ORTHO05D000422 1.7e-13 80.1 147 40.8
EL10Ac4g08416 Beta vulgaris HOM05D000578 ORTHO05D000422 5.1e-13 78.6 167 32.3
CARHR072090 Cardamine hirsuta HOM05D000578 ORTHO05D000422 5.1e-13 78.6 155 40.0
ECA240G2705 Erigeron canadensis HOM05D000578 ORTHO05D000422 6.6e-13 78.2 142 38.7
Glyma.12G233900 Glycine max HOM05D000578 ORTHO05D000422 6.6e-13 78.2 137 38.7
Phvul.011G168500 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 6.6e-13 78.2 140 35.7
arahy.Tifrunner.gnm1.ann1.Q6JUAH Arachis hypogaea HOM05D000578 ORTHO05D000422 1.1e-12 77.4 143 39.9
MBI07_g00481_MAGBIO Magnolia biondii HOM05D000578 ORTHO05D000422 1.1e-12 77.4 147 38.1
SalBow7G1681 Salvia bowleyana HOM05D000578 ORTHO05D000422 1.1e-12 77.4 138 37.0
PGSC0003DMG400019025 Solanum tuberosum HOM05D000578 ORTHO05D000422 1.1e-12 77.4 139 36.0
Carub.0002s2545 Capsella rubella HOM05D000578 ORTHO05D000422 1.5e-12 77.0 142 40.8
MELO3C016115.2 Cucumis melo HOM05D000578 ORTHO05D000422 1.9e-12 76.6 139 37.4
Oeu025327.2 Olea europaea HOM05D000578 ORTHO05D000422 1.9e-12 76.6 158 34.2
ClCG07G010120 Citrullus lanatus HOM05D000578 ORTHO05D000422 3.3e-12 75.9 139 36.7
Lj3g0020526 Lotus japonicus HOM05D000578 ORTHO05D000422 3.3e-12 75.9 137 35.0
Lalb_Chr01g0016361 Lupinus albus HOM05D000578 ORTHO05D000422 3.3e-12 75.9 148 38.5
Medtr2g073370 Medicago truncatula HOM05D000578 ORTHO05D000422 3.3e-12 75.9 138 34.8
VMungo1127G0774 Vigna mungo HOM05D000578 ORTHO05D000422 4.3e-12 75.5 137 36.5
CAN.G594.25 Capsicum annuum HOM05D000578 ORTHO05D000422 5.6e-12 75.1 140 38.6
Lj3g0021140 Lotus japonicus HOM05D000578 ORTHO05D000422 5.6e-12 75.1 137 35.0
Phvul.005G076700 Phaseolus vulgaris HOM05D000578 ORTHO05D000422 5.6e-12 75.1 139 36.7
TPR.G13101 Trifolium pratense HOM05D000578 ORTHO05D000422 5.6e-12 75.1 157 38.2
AL2G39000 Arabidopsis lyrata HOM05D000578 ORTHO05D000422 7.3e-12 74.7 141 41.1
CsaV3_4G008210 Cucumis sativus L. HOM05D000578 ORTHO05D000422 7.3e-12 74.7 139 37.4
DCAR_017589 Daucus carota HOM05D000578 ORTHO05D000422 7.3e-12 74.7 139 36.7
Thhalv10018946m.g Eutrema salsugineum HOM05D000578 ORTHO05D000422 7.3e-12 74.7 152 38.8
Lj8A146G67 Lonicera japonica HOM05D000578 ORTHO05D000422 7.3e-12 74.7 139 37.4
BcaC08g45415 Brassica carinata HOM05D000578 ORTHO05D000422 9.6e-12 74.3 139 40.3
C06p30450 Brassica napus HOM05D000578 ORTHO05D000422 9.6e-12 74.3 139 40.3
Glyma.13G265000 Glycine max HOM05D000578 ORTHO05D000422 9.6e-12 74.3 140 39.3
Ca_03930_v3 Cicer arietinum L. HOM05D000578 ORTHO05D000422 1.2e-11 73.9 136 37.5
MD03G1247700 Malus domestica HOM05D000578 ORTHO05D000422 1.2e-11 73.9 110 46.4
Sp5g33690 Schrenkiella parvula HOM05D000578 ORTHO05D000422 1.2e-11 73.9 143 39.2
BraA07t30393Z Brassica rapa HOM05D000578 ORTHO05D000422 1.6e-11 73.6 140 40.7
BolC6t40269H Brassica oleracea HOM05D000578 ORTHO05D000422 2.1e-11 73.2 148 39.2
ATR0602G117 Amborella trichopoda HOM05D000578 ORTHO05D000422 2.8e-11 72.8 142 37.3
Prupe.4G156600 Prunus persica HOM05D000578 ORTHO05D000422 2.8e-11 72.8 109 41.3
BcaB02g07172 Brassica carinata HOM05D000578 ORTHO05D000422 4.7e-11 72.0 142 38.7
BraA07t31894Z Brassica rapa HOM05D000578 ORTHO05D000422 1.1e-10 70.9 146 39.7
A07p27510 Brassica napus HOM05D000578 ORTHO05D000422 1.4e-10 70.5 139 39.6
HanXRQChr13g0389721 Helianthus annuus HOM05D000578 ORTHO05D000422 1.4e-10 70.5 130 38.5
Sed0025476 Sechium edule HOM05D000578 ORTHO05D000422 1.4e-10 70.5 139 38.1
Aa31LG4G2360 Aethionema arabicum HOM05D000578 ORTHO05D000422 1.8e-10 70.1 145 37.9
Ah.06g187680 Amaranthus hybridus HOM05D000578 ORTHO05D000422 1.8e-10 70.1 167 31.7
MSTRG.12861 Avicennia marina HOM05D000578 ORTHO05D000422 1.8e-10 70.1 138 34.8
COL.COLO4_17474 Corchorus olitorius HOM05D000578 ORTHO05D000422 1.8e-10 70.1 181 29.8
HanXRQChr14g0439351 Helianthus annuus HOM05D000578 ORTHO05D000422 1.8e-10 70.1 132 39.4
BcaC08g47429 Brassica carinata HOM05D000578 ORTHO05D000422 2.4e-10 69.7 147 38.1
BcaC03g15826 Brassica carinata HOM05D000578 ORTHO05D000422 5.2e-10 68.6 147 38.1
A07p43870 Brassica napus HOM05D000578 ORTHO05D000422 5.2e-10 68.6 148 37.8
C02p35680 Brassica napus HOM05D000578 ORTHO05D000422 5.2e-10 68.6 147 38.1
C06p52500 Brassica napus HOM05D000578 ORTHO05D000422 5.2e-10 68.6 150 38.7
BolC2t09588H Brassica oleracea HOM05D000578 ORTHO05D000422 5.2e-10 68.6 147 38.1
Oeu010030.1 Olea europaea HOM05D000578 ORTHO05D000422 6.9e-10 68.2 139 36.0
unitig_85.g27428 Utricularia gibba HOM05D000578 ORTHO05D000422 6.9e-10 68.2 136 34.6
Lsat_1_v5_gn_5_126341 Lactuca sativa HOM05D000578 ORTHO05D000422 1.2e-09 67.4 137 39.4
Sed0013847 Sechium edule HOM05D000578 ORTHO05D000422 1.2e-09 67.4 137 36.5
AT1G78600 Arabidopsis thaliana HOM05D000578 ORTHO05D000422 1.5e-09 67.0 158 34.8
Lsat_1_v5_gn_9_100420 Lactuca sativa HOM05D000578 ORTHO05D000422 1.5e-09 67.0 137 34.3
ECA236G3912 Erigeron canadensis HOM05D000578 ORTHO05D000422 2.0e-09 66.6 142 35.9
Lalb_Chr20g0109141 Lupinus albus HOM05D000578 ORTHO05D000422 2.0e-09 66.6 141 33.3
Oeu058457.1 Olea europaea HOM05D000578 ORTHO05D000422 2.0e-09 66.6 136 37.5
BcaB05g25147 Brassica carinata HOM05D000578 ORTHO05D000422 2.6e-09 66.2 150 38.0
A02p22250 Brassica napus HOM05D000578 ORTHO05D000422 2.6e-09 66.2 147 37.4
BraA02t07231Z Brassica rapa HOM05D000578 ORTHO05D000422 2.6e-09 66.2 147 37.4
Glyma.09G099000 Glycine max HOM05D000578 ORTHO05D000422 2.6e-09 66.2 139 37.4
CDE04G3632 Ceratophyllum demersum HOM05D000050 ORTHO05D002548 3.4e-09 65.9 140 30.7
SGA_v2.0_scaffold73G24385 Striga asiatica HOM05D000578 ORTHO05D000422 3.4e-09 65.9 156 33.3
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 7.6e-09 64.7 132 34.8
HPP92_009874 Vanilla planifolia HOM05D000578 ORTHO05D000422 7.6e-09 64.7 132 35.6
CDE02G2836 Ceratophyllum demersum HOM05D000578 ORTHO05D000422 9.9e-09 64.3 140 31.4
QL08p043651 Quercus lobata HOM05D000578 ORTHO05D000422 1.7e-08 63.5 136 33.8
Solyc12g005420.2 Solanum lycopersicum HOM05D000578 ORTHO05D000422 2.2e-08 63.2 132 35.6
Lalb_Chr03g0031311 Lupinus albus HOM05D000578 ORTHO05D000422 2.9e-08 62.8 143 32.9
MSTRG.14984 Avicennia marina HOM05D000578 ORTHO05D000422 3.8e-08 62.4 142 34.5
Sopen12g001390 Solanum pennellii HOM05D000578 ORTHO05D000422 1.4e-07 60.5 130 34.6
Nn5g27143 Nelumbo nucifera HOM05D000578 ORTHO05D000422 1.9e-07 60.1 139 30.2
HanXRQChr10g0305591 Helianthus annuus HOM05D000578 ORTHO05D000422 2.4e-07 59.7 130 36.2
MSTRG.6689 Avicennia marina HOM05D000578 ORTHO05D000422 3.2e-07 59.3 142 31.0
unitig_37.g12555 Utricularia gibba HOM05D000578 ORTHO05D000422 3.2e-07 59.3 138 34.8
FAN05G1878 Fragaria x ananassa HOM05D000578 ORTHO05D000422 5.4e-07 58.5 132 32.6
ATR1089G082 Amborella trichopoda HOM05D000578 ORTHO05D000422 1.6e-06 57.0 131 32.1


User provided reference genes

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