Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 1.7e-99 365.9 176 100.0
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.2e-81 306.6 171 88.3
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 2.1e-81 305.8 171 88.3
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 2.7e-81 305.4 171 87.7
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 2.3e-80 302.4 171 87.7
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 4.4e-79 298.1 171 87.1
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 5.4e-61 238.0 129 87.6
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 1.3e-59 233.4 129 83.7
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 2.9e-59 232.3 129 83.7
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 2.9e-59 232.3 128 84.4
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 3.3e-58 228.8 128 82.8
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 9.5e-58 227.3 130 80.8
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 9.5e-58 227.3 129 82.9
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 1.6e-57 226.5 129 82.9
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 1.6e-57 226.5 129 82.2
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 1.6e-57 226.5 130 81.5
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 2.8e-57 225.7 130 80.8
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 2.8e-57 225.7 129 82.9
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 1.0e-56 223.8 129 82.2
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 1.4e-56 223.4 127 81.9
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 1.4e-56 223.4 129 80.6
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 1.8e-56 223.0 129 80.6
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 3.0e-56 222.2 148 73.0
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 4.0e-56 221.9 131 77.9
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 5.2e-56 221.5 127 81.9
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 5.2e-56 221.5 128 82.0
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 5.2e-56 221.5 129 79.1
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 6.8e-56 221.1 139 74.1
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 8.9e-56 220.7 129 81.4
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 8.9e-56 220.7 129 81.4
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 1.2e-55 220.3 132 80.3
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 1.2e-55 220.3 130 77.7
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 1.5e-55 219.9 127 80.3
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 3.4e-55 218.8 129 77.5
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 7.5e-55 217.6 130 76.9
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 9.8e-55 217.2 129 80.6
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 1.7e-54 216.5 133 76.7
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 2.2e-54 216.1 129 78.3
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 2.9e-54 215.7 129 76.7
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 3.7e-54 215.3 129 76.7
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 4.9e-54 214.9 128 80.5
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 6.4e-54 214.5 129 76.7
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 6.4e-54 214.5 132 75.8
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 6.4e-54 214.5 125 79.2
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 6.4e-54 214.5 127 78.0
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 1.1e-53 213.8 135 74.1
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 1.4e-53 213.4 129 76.7
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 1.8e-53 213.0 128 79.7
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 1.8e-53 213.0 129 79.8
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 2.4e-53 212.6 129 77.5
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 4.1e-53 211.8 149 69.1
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 9.2e-53 210.7 136 72.1
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 9.2e-53 210.7 131 75.6
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 1.2e-52 210.3 125 78.4
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 1.2e-52 210.3 129 74.4
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 1.2e-52 210.3 131 75.6
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 1.6e-52 209.9 128 75.0
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 2.7e-52 209.1 140 71.4
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 2.7e-52 209.1 165 63.6
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 2.7e-52 209.1 129 76.7
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 3.5e-52 208.8 148 66.2
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 3.5e-52 208.8 127 75.6
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 5.9e-52 208.0 127 74.8
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 5.9e-52 208.0 127 74.8
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 5.9e-52 208.0 148 66.9
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 5.9e-52 208.0 148 66.9
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 5.9e-52 208.0 140 71.4
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 7.8e-52 207.6 129 73.6
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 7.8e-52 207.6 137 69.3
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.0e-51 207.2 149 66.4
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.0e-51 207.2 150 67.3
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 1.3e-51 206.8 128 73.4
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 1.3e-51 206.8 128 73.4
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 1.7e-51 206.5 148 66.9
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 3.9e-51 205.3 148 66.2
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 3.9e-51 205.3 128 74.2
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 5.0e-51 204.9 130 73.1
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 6.6e-51 204.5 130 71.5
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 8.6e-51 204.1 130 71.5
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 5.6e-50 201.4 128 73.4
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 1.6e-49 199.9 136 66.2
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 2.8e-49 199.1 149 64.4
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 2.8e-49 199.1 124 73.4
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 2.3e-48 196.1 129 69.8
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 3.1e-48 195.7 140 69.3
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 1.2e-47 193.7 130 70.0
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 2.0e-47 193.0 128 65.6
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 5.8e-47 191.4 130 66.2
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 2.2e-46 189.5 128 71.1
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 4.9e-46 188.3 127 66.1
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 9.2e-45 184.1 124 70.2
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 1.2e-44 183.7 126 65.9
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 6.0e-44 181.4 127 66.9
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 8.6e-43 177.6 128 61.7
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 9.5e-42 174.1 114 70.2
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 2.1e-41 172.9 128 60.9
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 5.2e-40 168.3 129 58.1
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 9.9e-39 164.1 126 58.7
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 1.6e-36 156.8 117 61.5
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 1.3e-35 153.7 111 70.3
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 1.1e-32 144.1 126 50.0
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 2.2e-30 136.3 113 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 4.9e-30 135.2 130 48.5
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 1.1e-29 134.0 130 49.2
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 9.2e-29 131.0 155 45.8
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 3.0e-27 125.9 121 51.2
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 4.3e-26 122.1 81 72.8
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 4.3e-26 122.1 103 62.1
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 1.2e-25 120.6 83 75.9
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 3.5e-20 102.4 52 80.8
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 6.6e-19 98.2 55 74.5
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 8.7e-19 97.8 54 72.2
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 3.3e-18 95.9 69 71.0
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 5.6e-18 95.1 59 66.1
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 1.6e-17 93.6 54 66.7
Haze_20905 Corylus avellana HOM05D006951 ORTHO05D008594 1.5e-07 60.5 49 65.3
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 4.5e-07 58.9 43 58.1
Hund00749 Selenicereus undatus HOM05D004066 ORTHO05D004434 1.3e-06 57.4 43 55.8


User provided reference genes

Program Settings