Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468701 Rosa chinensis HOM05D000855 ORTHO05D008530 2.9e-215 751.9 455 100.0
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 1.1e-187 660.2 461 85.7
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 1.1e-187 660.2 461 85.7
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.5e-184 648.3 461 85.0
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 1.1e-174 617.1 455 77.8
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 5.9e-144 515.0 464 61.2
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 8.5e-143 511.1 464 62.9
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 5.5e-142 508.4 457 62.6
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 2.1e-141 506.5 470 65.1
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 1.8e-140 503.4 457 61.7
CANSAT80G1453 Cannabis sativa HOM05D000855 ORTHO05D008530 2.1e-133 479.9 466 61.8
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 5.7e-131 471.9 393 68.2
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.7e-128 463.0 466 59.9
Cpa.g.sc114.43 Carica papaya HOM05D000855 ORTHO05D008530 1.7e-127 460.3 469 55.9
TWI53G0567 Tripterygium wilfordii HOM05D000855 ORTHO05D008530 8.5e-127 458.0 452 60.2
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.5e-126 457.2 446 60.1
Cc06_g03530 Coffea canephora HOM05D000855 ORTHO05D008530 1.9e-126 456.8 466 55.2
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.5e-126 456.4 443 59.1
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 9.4e-126 454.5 448 63.8
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 8.0e-125 451.4 466 59.0
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 1.0e-124 451.1 442 57.7
HanXRQChr14g0454621 Helianthus annuus HOM05D000855 ORTHO05D008530 6.8e-124 448.4 434 57.4
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 6.8e-124 448.4 446 61.9
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 1.2e-123 447.6 420 66.7
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 9.8e-123 444.5 452 55.8
Lsat_1_v5_gn_2_109661 Lactuca sativa HOM05D000855 ORTHO05D008530 8.3e-122 441.4 462 58.2
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 1.1e-121 441.0 460 55.4
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.1e-121 441.0 447 56.4
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 2.4e-121 439.9 445 55.3
Duzib093G1875 Durio zibethinus HOM05D000855 ORTHO05D008530 2.4e-121 439.9 457 56.7
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 3.5e-120 436.0 494 52.4
Lalb_Chr06g0171381 Lupinus albus HOM05D000855 ORTHO05D008530 7.7e-120 434.9 449 57.2
THA.LOC104826985 Tarenaya hassleriana HOM05D000855 ORTHO05D008530 7.7e-120 434.9 490 55.7
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 6.5e-119 431.8 466 55.6
Nitab4.5_0001142g0070 Nicotiana tabacum HOM05D000855 ORTHO05D008530 3.3e-118 429.5 453 57.4
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 4.2e-118 429.1 446 54.5
Gorai.006G168900 Gossypium raimondii HOM05D000855 ORTHO05D008530 4.2e-118 429.1 479 57.4
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 9.5e-118 427.9 448 54.7
Peaxi162Scf00005g00472 Petunia axillaris HOM05D000855 ORTHO05D008530 2.1e-117 426.8 452 59.7
Thhalv10020113m.g Eutrema salsugineum HOM05D000855 ORTHO05D008530 3.6e-117 426.0 488 51.8
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 8.0e-117 424.9 358 69.3
RhsimUnG0118600 Rhododendron simsii HOM05D000855 ORTHO05D008530 1.0e-116 424.5 457 53.4
Sopen09g002180 Solanum pennellii HOM05D000855 ORTHO05D008530 1.4e-116 424.1 448 54.9
Sopen09g002200 Solanum pennellii HOM05D000855 ORTHO05D008530 1.4e-116 424.1 448 54.9
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 2.3e-116 423.3 407 59.2
Sp3g07980 Schrenkiella parvula HOM05D000855 ORTHO05D008530 2.3e-116 423.3 493 55.0
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 3.0e-116 422.9 486 51.9
Actinidia19717 Actinidia chinensis HOM05D000855 ORTHO05D008530 4.0e-116 422.5 377 64.5
AL3G20860 Arabidopsis lyrata HOM05D000855 ORTHO05D008530 5.2e-116 422.2 487 52.4
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 6.8e-116 421.8 472 56.1
PGSC0003DMG400001735 Solanum tuberosum HOM05D000855 ORTHO05D008530 1.5e-115 420.6 452 54.6
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 2.6e-115 419.9 477 53.5
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 3.4e-115 419.5 453 55.4
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 4.4e-115 419.1 490 53.5
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 2.2e-114 416.8 446 54.3
Gohir.D09G147800 Gossypium hirsutum HOM05D000855 ORTHO05D008530 2.2e-114 416.8 452 58.8
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 4.9e-114 415.6 435 55.6
Lalb_Chr02g0153641 Lupinus albus HOM05D000855 ORTHO05D008530 4.9e-114 415.6 468 54.1
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 4.9e-114 415.6 399 58.9
A05p39410 Brassica napus HOM05D000855 ORTHO05D008530 8.3e-114 414.8 491 54.8
BraA05t22722Z Brassica rapa HOM05D000855 ORTHO05D008530 8.3e-114 414.8 491 54.8
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 8.3e-114 414.8 445 54.2
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.4e-113 414.1 413 56.7
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 3.1e-113 412.9 445 54.2
C05p58440 Brassica napus HOM05D000855 ORTHO05D008530 7.0e-113 411.8 461 56.2
BolC5t34496H Brassica oleracea HOM05D000855 ORTHO05D008530 7.0e-113 411.8 461 56.2
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.2e-112 411.0 416 55.3
BcaC05g29690 Brassica carinata HOM05D000855 ORTHO05D008530 2.0e-112 410.2 490 55.1
Nitab4.5_0009766g0020 Nicotiana tabacum HOM05D001673 ORTHO05D002312 2.0e-112 410.2 393 60.8
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.3e-111 406.8 418 55.5
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 1.6e-109 400.6 446 53.1
Gohir.A09G152200 Gossypium hirsutum HOM05D000855 ORTHO05D008530 1.0e-108 397.9 477 54.7
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 1.0e-108 397.9 371 69.0
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 2.3e-108 396.7 480 50.6
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 4.0e-108 396.0 390 64.6
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 4.0e-108 396.0 466 51.1
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 1.5e-107 394.0 464 52.6
Carub.0003s0874 Capsella rubella HOM05D000855 ORTHO05D008530 3.7e-106 389.4 492 49.0
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 9.2e-105 384.8 459 51.0
AUR62042604 Chenopodium quinoa HOM05D000855 ORTHO05D008530 1.2e-104 384.4 465 49.2
SGA_v2.0_scaffold75G24882 Striga asiatica HOM05D000001 ORTHO05D000003 2.5e-102 376.7 390 54.6
COL.COLO4_27086 Corchorus olitorius HOM05D001673 ORTHO05D002312 3.3e-102 376.3 367 67.6
Solyc09g007320.4 Solanum lycopersicum HOM05D000855 ORTHO05D008530 2.3e-100 370.2 448 50.4
Actinidia04698 Actinidia chinensis HOM05D000855 ORTHO05D008530 3.1e-100 369.8 377 59.2
Lj2P107T25 Lonicera japonica HOM05D000855 ORTHO05D008530 4.0e-100 369.4 340 65.6
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 1.2e-99 367.9 467 48.4
ECA238G0798 Erigeron canadensis HOM05D000855 ORTHO05D008530 3.7e-98 362.8 348 62.9
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 1.7e-95 354.0 338 58.3
CDE08G0924 Ceratophyllum demersum HOM05D000855 ORTHO05D008530 1.7e-87 327.4 468 44.7
TAR623G1726 Trochodendron aralioides HOM05D000855 ORTHO05D008530 2.0e-83 313.9 301 68.1
CAN.G608.19 Capsicum annuum HOM05D000855 ORTHO05D008530 1.7e-79 300.8 282 58.5
HPP92_017937 Vanilla planifolia HOM05D000855 ORTHO05D008530 1.1e-78 298.1 464 42.9
SEGI_13860 Sequoiadendron giganteum HOM05D000855 ORTHO05D008530 1.3e-71 274.6 381 43.0
ATR1159G087 Amborella trichopoda HOM05D000855 ORTHO05D008530 1.4e-65 254.6 424 40.3
Zm00001eb156000 Zea mays HOM05D000855 ORTHO05D008530 1.9e-57 227.6 431 41.3
Os12g0102600 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D008530 4.6e-56 223.0 381 44.9
Os11g0103000 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D008530 2.1e-40 171.0 286 46.2
Pp3c12_2390 Physcomitrium patens HOM05D000855 ORTHO05D008530 7.9e-40 169.1 385 32.5
AagrBONN_evm.TU.Sc2ySwM_117.255 Anthoceros agrestis HOM05D000855 ORTHO05D008530 5.9e-35 152.9 391 32.5
arahy.Tifrunner.gnm1.ann1.SJQ0PQ Arachis hypogaea HOM05D000855 ORTHO05D008530 3.8e-34 150.2 290 36.6
arahy.Tifrunner.gnm1.ann1.GVB1H0 Arachis hypogaea HOM05D000855 ORTHO05D008530 3.9e-31 140.2 269 36.1
SMO356G0123 Selaginella moellendorffii HOM05D000855 ORTHO05D008530 2.0e-30 137.9 406 36.2
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.2e-26 124.4 64 96.9
Mapoly0019s0086 Marchantia polymorpha HOM05D000855 ORTHO05D008530 2.2e-26 124.4 259 36.7
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.4e-25 121.7 113 55.8
SEGI_27816 Sequoiadendron giganteum HOM05D000855 ORTHO05D008530 3.5e-19 100.5 138 42.8
SMO172G0102 Selaginella moellendorffii HOM05D005706 ORTHO05D008530 5.0e-18 96.7 277 27.4
SEGI_38382 Sequoiadendron giganteum HOM05D000855 ORTHO05D008530 4.2e-17 93.6 131 42.7
SEGI_18082 Sequoiadendron giganteum HOM05D005706 ORTHO05D007474 5.2e-15 86.7 409 24.4
SEGI_29165 Sequoiadendron giganteum HOM05D005706 ORTHO05D007474 5.2e-15 86.7 409 24.4
MBI01_g14114_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 3.7e-13 80.5 69 56.5
MBI01_g14113_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 5.9e-11 73.2 140 36.4
Nitab4.5_0000175g0190 Nicotiana tabacum HOM05D003028 ORTHO05D003465 6.5e-10 69.7 308 24.7
A10p01730 Brassica napus HOM05D003028 ORTHO05D003465 9.4e-09 65.9 408 22.3
BcaC05g24558 Brassica carinata HOM05D003028 ORTHO05D003465 1.2e-08 65.5 205 27.3
BraA10t42448Z Brassica rapa HOM05D003028 ORTHO05D003465 2.7e-08 64.3 408 22.3
THA.LOC104825991 Tarenaya hassleriana HOM05D003028 ORTHO05D003465 6.1e-08 63.2 216 26.9
Sp1g02100 Schrenkiella parvula HOM05D003028 ORTHO05D003465 1.8e-07 61.6 205 26.3
Cfa022922 Carpinus fangiana HOM05D000855 ORTHO05D008530 2.3e-07 61.2 100 47.0
Nitab4.5_0001822g0080 Nicotiana tabacum HOM05D003028 ORTHO05D003465 2.3e-07 61.2 308 23.4
Gorai.001G071600 Gossypium raimondii HOM05D003028 ORTHO05D003465 4.0e-07 60.5 185 25.9
ATR0064G080 Amborella trichopoda HOM05D005706 ORTHO05D007474 8.8e-07 59.3 244 27.0
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 8.8e-07 59.3 45 66.7
Gohir.D07G068100 Gossypium hirsutum HOM05D003028 ORTHO05D003465 2.0e-06 58.2 184 25.5
TWI18G1240 Tripterygium wilfordii HOM05D003028 ORTHO05D003465 2.6e-06 57.8 303 23.8
MSTRG.8194 Avicennia marina HOM05D003028 ORTHO05D003465 9.8e-06 55.8 378 20.1


User provided reference genes

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