Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 1.1e-207 726.5 377 100.0
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.0e-186 656.8 377 92.6
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.0e-186 656.8 377 92.6
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.0e-186 655.2 377 92.6
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 8.8e-186 653.7 377 92.6
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 3.1e-175 618.6 378 84.1
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.4e-169 598.2 377 86.2
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 7.5e-169 597.4 377 82.8
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 8.3e-144 514.2 383 72.8
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 3.2e-143 512.3 382 72.5
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 1.6e-142 510.0 370 73.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 1.7e-141 506.5 325 80.9
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.0e-141 505.8 388 72.7
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 6.6e-141 504.6 397 70.3
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 2.6e-137 492.7 390 69.2
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 2.2e-136 489.6 383 70.0
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 2.9e-136 489.2 387 70.3
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 2.9e-136 489.2 385 69.6
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.1e-135 487.3 385 69.9
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 9.2e-135 484.2 380 68.2
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.1e-134 483.0 425 66.4
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 2.7e-134 482.6 381 69.8
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 3.5e-134 482.3 387 68.0
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 7.8e-134 481.1 387 68.5
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.0e-133 480.7 380 67.6
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 6.6e-133 478.0 380 66.8
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.1e-132 477.2 377 67.6
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.5e-132 476.9 382 69.1
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 1.5e-132 476.9 339 75.5
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 3.3e-132 475.7 378 69.3
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 4.3e-132 475.3 380 68.2
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 9.5e-132 474.2 385 67.8
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.8e-131 472.6 381 69.3
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 2.8e-131 472.6 382 68.1
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 1.8e-130 469.9 378 68.5
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 3.1e-130 469.2 378 68.5
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 1.2e-129 467.2 378 68.5
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 2.6e-129 466.1 379 68.6
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 2.6e-129 466.1 379 68.6
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 5.8e-129 464.9 378 66.4
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 7.6e-129 464.5 399 65.9
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 2.2e-128 463.0 377 67.6
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 2.9e-128 462.6 355 71.3
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 4.9e-128 461.8 318 76.7
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 4.9e-128 461.8 402 64.9
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 4.9e-128 461.8 383 66.3
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 4.9e-128 461.8 381 67.5
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 8.4e-128 461.1 378 66.7
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 1.4e-127 460.3 387 66.7
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.9e-127 459.9 379 69.1
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 3.2e-127 459.1 381 67.2
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 4.1e-127 458.8 350 71.4
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 7.1e-127 458.0 385 65.5
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 1.2e-126 457.2 386 66.3
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.6e-126 456.8 381 67.5
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 2.3e-125 453.0 385 66.5
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 5.1e-125 451.8 393 65.9
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 6.6e-125 451.4 380 67.1
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 1.5e-124 450.3 380 67.1
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 1.5e-124 450.3 379 65.4
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.9e-124 449.9 385 66.2
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 2.5e-124 449.5 381 66.1
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 2.5e-124 449.5 324 74.1
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 4.3e-124 448.7 320 74.1
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 7.3e-124 448.0 319 73.7
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 7.3e-124 448.0 375 65.1
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 1.6e-123 446.8 378 65.1
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 2.8e-123 446.0 386 63.5
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 3.6e-123 445.7 322 73.3
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.4e-122 443.7 259 86.9
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 4.0e-122 442.2 378 65.3
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 4.0e-122 442.2 397 63.5
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 4.0e-122 442.2 383 64.2
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 5.2e-122 441.8 366 66.7
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 1.5e-121 440.3 289 79.9
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 2.0e-121 439.9 391 64.2
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 7.6e-121 438.0 386 64.8
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 1.9e-119 433.3 378 65.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 2.3e-117 426.4 369 65.3
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 8.7e-117 424.5 336 69.6
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 5.6e-116 421.8 247 87.0
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 7.3e-116 421.4 387 63.8
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 9.9e-113 411.0 385 60.3
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 1.2e-110 404.1 358 63.7
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.7e-110 402.9 328 67.1
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.3e-109 399.8 268 76.5
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.3e-107 394.0 331 64.4
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.6e-107 393.7 430 55.6
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 3.1e-106 389.4 520 48.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 9.0e-106 387.9 242 84.3
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 1.2e-105 387.5 330 63.9
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 2.0e-105 386.7 525 47.4
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 6.4e-104 381.7 305 69.2
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.1e-103 380.9 332 63.3
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 2.4e-103 379.8 394 57.6
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.6e-102 377.1 328 66.5
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 4.6e-102 375.6 207 96.1
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 2.5e-100 369.8 267 70.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.6e-99 367.1 325 64.0
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.6e-99 367.1 300 63.0
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 3.1e-98 362.8 290 65.5
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 4.5e-97 359.0 295 68.5
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 1.2e-94 350.9 304 59.9
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 1.2e-89 334.3 321 60.1
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 3.4e-89 332.8 392 54.6
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 2.3e-85 320.1 422 51.7
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 2.6e-81 306.6 400 50.8
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 6.1e-78 295.4 186 82.3
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 2.3e-77 293.5 275 56.7
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 3.9e-77 292.7 269 61.3
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 1.3e-75 287.7 263 57.8
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 9.4e-71 271.6 257 59.5
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 9.4e-71 271.6 260 58.1
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.1e-68 264.6 258 54.7
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 1.7e-67 260.8 187 69.0
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.3e-64 251.1 157 81.5
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 4.0e-61 239.6 262 50.8
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 2.2e-59 233.8 131 94.7
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.7e-56 224.2 129 85.3
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 2.7e-54 216.9 136 78.7
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 1.3e-51 208.0 121 88.4
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.7e-43 179.9 108 82.4
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.0e-37 161.8 251 37.8
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 5.8e-28 129.4 176 43.2
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-25 121.7 187 36.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 3.5e-25 120.2 80 81.2
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 7.8e-25 119.0 90 67.8
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 6.6e-16 89.4 153 45.8
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 8.9e-13 79.0 114 46.5
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 2.6e-12 77.4 41 95.1
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 2.3e-08 64.3 36 83.3
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 5.6e-07 59.7 316 21.5
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 7.3e-07 59.3 51 58.8


User provided reference genes

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