Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.2e-132 476.5 240 100.0
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 7.7e-127 457.2 241 94.6
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 1.3e-126 456.4 241 94.6
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.5e-125 451.1 241 93.8
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.4e-125 450.3 241 92.9
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.8e-123 446.0 259 88.0
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.0e-122 442.6 262 86.6
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 3.3e-114 415.2 239 86.2
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 8.3e-97 357.5 217 80.6
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 7.0e-96 354.4 244 75.4
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 9.2e-96 354.0 240 75.4
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 1.2e-95 353.6 240 77.5
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 2.0e-95 352.8 241 76.8
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 3.5e-95 352.1 240 75.0
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.0e-94 350.5 241 75.1
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.9e-93 346.3 240 73.3
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.9e-93 346.3 240 73.3
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.5e-93 345.9 243 73.3
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.5e-93 345.9 240 73.3
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 7.3e-93 344.4 243 72.8
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 1.2e-92 343.6 241 71.8
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.6e-92 343.2 240 73.3
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 3.6e-92 342.0 244 74.2
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 8.0e-92 340.9 237 73.0
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 1.8e-91 339.7 237 72.2
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 6.8e-91 337.8 239 72.8
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 8.9e-91 337.4 240 72.1
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 2.0e-90 336.3 223 74.9
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 3.4e-90 335.5 240 72.5
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 3.4e-90 335.5 224 74.6
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.3e-89 333.6 221 75.1
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 1.3e-89 333.6 237 70.0
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 2.2e-89 332.8 244 70.9
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.9e-89 332.4 240 72.1
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 8.3e-89 330.9 241 69.3
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 2.4e-88 329.3 242 66.9
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.4e-88 329.3 233 73.4
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 3.2e-88 328.9 212 75.9
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 9.2e-88 327.4 243 70.0
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 7.8e-87 324.3 215 72.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.3e-86 323.6 217 74.2
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.3e-86 323.6 240 68.8
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.7e-86 323.2 217 73.7
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.7e-86 323.2 240 70.0
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 2.3e-86 322.8 217 73.7
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.0e-86 322.4 215 73.0
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 3.0e-86 322.4 221 72.4
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 3.9e-86 322.0 221 71.9
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.9e-85 319.7 223 69.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.5e-85 319.3 239 67.8
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 3.3e-85 318.9 241 68.5
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 4.3e-85 318.5 241 68.9
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 4.3e-85 318.5 249 66.3
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 5.6e-85 318.2 237 67.9
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 5.6e-85 318.2 214 72.9
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 7.3e-85 317.8 225 70.7
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.1e-84 316.2 219 73.1
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 2.1e-84 316.2 219 70.3
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.1e-84 316.2 240 68.3
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 2.8e-84 315.8 240 68.8
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 3.6e-84 315.5 231 68.4
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 3.6e-84 315.5 215 73.0
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 3.6e-84 315.5 245 68.2
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 3.6e-84 315.5 220 70.5
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 6.2e-84 314.7 242 68.6
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-83 313.9 241 66.8
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.4e-83 313.5 216 71.3
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.4e-83 313.5 196 75.5
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.8e-83 313.2 239 69.0
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 2.3e-83 312.8 196 75.0
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.3e-83 312.8 241 67.6
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 3.1e-83 312.4 189 78.3
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 6.8e-83 311.2 244 65.6
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 8.9e-83 310.8 192 75.5
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-82 310.5 248 66.5
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.5e-82 310.1 248 66.1
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.5e-82 310.1 248 66.1
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 1.5e-82 310.1 240 69.2
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.5e-82 310.1 217 71.0
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 2.6e-82 309.3 248 66.1
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 4.4e-82 308.5 242 66.9
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 5.8e-82 308.1 189 75.7
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 5.8e-82 308.1 243 65.0
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 7.5e-82 307.8 239 66.9
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 9.8e-82 307.4 189 75.1
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 9.8e-82 307.4 222 69.4
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 1.3e-81 307.0 237 66.7
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 2.9e-81 305.8 189 74.6
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 3.7e-81 305.4 240 65.4
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 4.9e-81 305.1 189 75.1
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 8.3e-81 304.3 232 67.2
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 8.3e-81 304.3 246 65.9
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.1e-80 303.9 219 70.3
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 3.2e-80 302.4 189 74.1
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 2.0e-79 299.7 218 67.4
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.7e-79 299.3 249 62.7
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 2.3e-78 296.2 240 63.3
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.3e-78 296.2 252 60.7
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.0e-78 295.8 197 72.6
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 6.6e-78 294.7 249 61.4
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.5e-77 293.5 252 61.5
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.5e-77 292.7 245 62.4
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 4.3e-77 292.0 240 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.2e-74 283.9 189 70.4
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 4.4e-74 282.0 249 61.8
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 3.7e-73 278.9 221 65.6
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 3.2e-72 275.8 223 64.1
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 9.2e-72 274.2 187 71.1
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 1.6e-71 273.5 194 69.6
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 2.1e-71 273.1 203 69.0
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 4.6e-71 271.9 308 51.3
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 6.0e-71 271.6 240 57.1
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.0e-70 270.8 189 64.0
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 8.1e-68 261.2 184 62.0
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 5.2e-67 258.5 166 74.7
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 6.8e-67 258.1 164 75.0
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 2.9e-65 252.7 363 42.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 6.0e-63 245.0 239 51.0
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 3.9e-62 242.3 178 67.4
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 3.1e-59 232.6 141 78.0
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 1.6e-55 220.3 183 56.3
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 9.0e-51 204.5 183 54.6
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.4e-43 180.6 115 76.5
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 5.3e-43 178.7 128 63.3
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 1.0e-38 164.5 105 73.3
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 6.7e-38 161.8 105 71.4
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 3.8e-25 119.4 78 73.1
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 1.0e-22 111.3 167 37.7
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.5e-21 107.5 242 28.9
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 5.7e-21 105.5 183 31.1
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 1.7e-20 104.0 228 32.0
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.4e-19 100.9 183 26.2
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.8e-19 100.5 232 26.3
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.3e-19 99.0 189 25.9
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 6.9e-19 98.6 228 31.6
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 6.9e-19 98.6 187 31.6
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 6.9e-19 98.6 189 31.7
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.6e-18 96.7 197 26.4
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 3.4e-18 96.3 197 26.4
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 5.9e-18 95.5 245 28.2
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 8.5e-17 91.7 165 29.1
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.4e-16 90.9 186 29.6
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 2.5e-16 90.1 186 29.6
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.2e-16 89.7 181 29.3
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 3.2e-16 89.7 164 31.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 3.2e-16 89.7 228 28.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 4.2e-16 89.4 186 26.9
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.2e-16 89.4 64 70.3
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 4.2e-16 89.4 203 27.1
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 7.2e-16 88.6 185 27.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 9.4e-16 88.2 181 29.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 9.4e-16 88.2 197 26.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.2e-15 87.8 179 26.8
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.2e-15 87.8 205 26.3
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.2e-15 87.8 188 26.1
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 2.1e-15 87.0 223 26.9
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.1e-15 87.0 167 26.3
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.7e-15 86.7 167 26.3
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 4.7e-15 85.9 229 27.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.8e-14 84.0 179 25.7
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.9e-14 82.8 241 27.4
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 3.9e-14 82.8 198 26.8
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 5.1e-14 82.4 227 25.1
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 8.8e-14 81.6 222 26.6
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.1e-13 81.3 222 26.6
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.5e-13 80.9 179 25.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.0e-13 80.5 179 24.6
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 2.6e-13 80.1 196 24.5
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.6e-13 80.1 196 24.5
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 2.6e-13 80.1 168 29.2
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 4.4e-13 79.3 238 24.4
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 5.7e-13 79.0 238 25.2
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 7.4e-13 78.6 236 27.5
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.2e-12 77.0 166 27.7
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.8e-12 76.6 157 31.2
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.8e-12 76.6 245 25.7
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.4e-11 74.3 237 28.3
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 2.6e-10 70.1 149 26.2
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.6e-10 70.1 37 81.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 7.7e-10 68.6 195 25.6
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.3e-09 67.8 40 82.5
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 6.5e-09 65.5 136 25.7
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.1e-08 64.7 190 27.4


User provided reference genes

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