Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 2088.2 976 100.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1976.8 974 93.9
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1976.8 979 93.6
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1964.9 979 93.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1942.2 954 94.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1875.1 925 93.2
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1810.8 974 85.5
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1798.5 975 85.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1774.2 974 83.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1762.7 973 83.4
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1712.2 974 81.0
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1707.6 973 81.2
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1703.3 976 80.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1689.9 974 79.5
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1687.2 975 79.3
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1686.0 978 79.1
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1679.8 975 79.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1674.8 959 80.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1674.1 973 78.3
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1673.7 986 78.3
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1673.7 975 78.3
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1667.1 973 78.6
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1666.4 973 78.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1666.0 975 78.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1657.1 976 78.3
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1649.0 974 77.9
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1647.5 974 77.3
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1642.9 974 77.1
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1640.9 975 78.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1634.0 968 77.3
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1632.8 973 77.1
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1629.0 969 77.8
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1619.8 979 76.8
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1618.6 976 76.3
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 968 77.5
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1610.1 973 75.3
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 971 76.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 959 76.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1594.3 967 76.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 968 75.8
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 966 77.0
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1589.3 968 76.4
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 971 76.0
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 968 75.5
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1586.6 965 76.4
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1585.9 966 76.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1582.4 966 75.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1580.8 986 74.4
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1580.5 978 75.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 974 74.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1575.8 975 75.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 978 75.7
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1570.8 968 74.5
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1570.8 969 74.5
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 977 73.9
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1564.7 975 74.9
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1564.3 975 74.5
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 964 74.9
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 971 73.9
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1560.0 974 74.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1560.0 971 73.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 982 74.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 970 74.8
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1557.0 973 74.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1557.0 973 74.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 963 74.2
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 967 74.0
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1548.9 971 74.7
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 980 73.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 976 73.3
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 974 73.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1539.6 969 73.3
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 984 72.6
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1537.7 969 73.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1534.6 981 73.0
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 979 72.8
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1529.6 974 73.4
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 978 72.7
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 972 72.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 965 73.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 970 73.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 971 73.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1522.7 969 72.8
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 974 72.2
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 973 71.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1510.0 941 74.4
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 968 72.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 992 70.9
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1489.2 978 71.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 872 77.2
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 849 79.7
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1477.6 878 76.8
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1476.8 959 72.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1474.1 962 71.8
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 973 70.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1463.7 984 68.8
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1463.4 976 69.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1456.8 974 69.5
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1456.4 978 69.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1456.4 977 70.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1453.7 979 68.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1453.3 976 69.4
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 971 69.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 971 69.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 971 69.6
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1446.8 846 77.7
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 971 69.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 971 69.7
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 972 69.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1432.2 971 69.4
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1432.2 971 68.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1428.7 971 69.1
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1417.1 973 69.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1416.0 971 68.8
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1412.1 971 68.5
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 971 68.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1379.8 1006 63.9
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1340.9 982 64.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1336.2 971 65.8
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1327.8 771 79.2
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1327.0 763 78.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1313.9 971 65.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1296.6 973 64.7
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1284.6 790 75.9
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1264.2 846 69.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1250.3 785 73.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1171.0 787 69.6
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.0e-310 1070.1 981 54.2
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.2e-308 1063.1 685 72.4
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.3e-294 1016.5 966 52.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-290 1003.4 704 68.9
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.7e-276 955.3 964 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.1e-267 925.6 961 48.9
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.7e-261 904.8 564 74.5
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.4e-256 890.2 977 46.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.8e-236 822.8 845 49.9
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.3e-196 691.0 403 77.2
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 3.6e-130 470.3 289 74.7
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 4.7e-130 469.9 410 57.3
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 4.8e-127 459.9 344 66.0
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 3.8e-116 423.7 369 58.5
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 7.5e-96 356.3 216 75.5
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-94 351.7 276 63.8
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.0e-94 349.7 202 77.7
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.4e-80 304.3 192 73.4
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.1e-67 262.7 159 73.6
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.2e-66 259.2 156 74.4
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.4e-64 250.8 211 56.9
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 4.4e-64 250.8 688 30.2
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 9.3e-62 243.0 143 75.5
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 3.2e-54 218.0 368 40.2
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.9e-51 208.8 147 63.9
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.4e-46 192.6 158 56.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.7e-44 183.3 841 23.3
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.3e-43 181.0 149 59.1
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.2e-38 164.5 93 76.3
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 3.5e-37 161.4 149 57.0
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.9e-35 155.6 119 57.1
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.6e-34 152.5 92 77.2
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.6e-32 145.2 118 57.6
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 8.4e-31 140.2 92 70.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-28 132.9 89 69.7
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-23 116.7 183 37.7
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.3e-20 105.5 121 46.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 3.7e-18 98.2 183 33.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-17 96.3 416 25.5
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 5.3e-17 94.4 71 66.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 4.2e-14 84.7 113 42.5
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.8e-10 71.2 46 63.0
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.6e-08 66.2 75 45.3
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.3e-07 63.2 48 64.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.9e-07 62.0 45 66.7


User provided reference genes

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