Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 2.6e-40 168.3 87 100.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 3.4e-24 114.8 62 98.4
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 7.3e-19 97.1 63 85.7
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 7.3e-19 97.1 63 85.7
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 7.3e-19 97.1 63 85.7
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 3.6e-18 94.7 63 84.1
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 4.2e-14 81.3 62 75.8
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 6.0e-13 77.4 61 68.9
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 4.3e-11 71.2 63 60.3
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 9.6e-11 70.1 51 70.6
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 9.6e-11 70.1 51 70.6
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.1e-10 68.9 69 59.4
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 8.1e-10 67.0 72 54.2
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 8.1e-10 67.0 55 63.6
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.8e-09 65.9 72 55.6
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.8e-09 65.9 72 55.6
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 2.4e-09 65.5 63 60.3
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 3.1e-09 65.1 55 61.8
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 3.1e-09 65.1 80 47.5
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 3.1e-09 65.1 54 66.7
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.0e-09 64.7 66 60.6
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.0e-09 64.7 66 60.6
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 4.0e-09 64.7 66 60.6
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 5.3e-09 64.3 56 60.7
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 5.3e-09 64.3 52 63.5
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 6.9e-09 63.9 79 51.9
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 6.9e-09 63.9 64 56.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 9.0e-09 63.5 57 61.4
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 9.0e-09 63.5 54 61.1
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 9.0e-09 63.5 55 65.5
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 9.0e-09 63.5 53 64.2
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.5e-08 62.8 53 66.0
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.5e-08 62.8 62 54.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.0e-08 62.4 55 61.8
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.0e-08 62.4 56 60.7
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 2.0e-08 62.4 54 57.4
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 2.0e-08 62.4 54 57.4
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.0e-08 62.4 53 60.4
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.6e-08 62.0 66 59.1
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.6e-08 62.0 51 60.8
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 3.4e-08 61.6 65 56.9
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 4.4e-08 61.2 58 55.2
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 7.6e-08 60.5 61 57.4
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 7.6e-08 60.5 62 58.1
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 9.9e-08 60.1 64 57.8
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 9.9e-08 60.1 62 58.1
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 9.9e-08 60.1 51 58.8
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.3e-07 59.7 63 60.3
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.3e-07 59.7 68 54.4
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.7e-07 59.3 58 55.2
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.7e-07 59.3 62 56.5
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.7e-07 59.3 53 62.3
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 4.9e-07 57.8 64 50.0
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 4.9e-07 57.8 59 52.5
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 4.9e-07 57.8 60 63.3
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 4.9e-07 57.8 57 56.1
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 6.4e-07 57.4 53 58.5
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 6.4e-07 57.4 65 53.8
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 6.4e-07 57.4 64 54.7
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.1e-06 56.6 62 54.8
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.1e-06 56.6 59 52.5
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 1.4e-06 56.2 53 60.4
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.4e-06 56.2 71 52.1
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.9e-06 55.8 56 53.6
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.4e-06 55.5 55 60.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 2.4e-06 55.5 70 51.4
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 3.2e-06 55.1 54 57.4
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 3.2e-06 55.1 66 56.1
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 3.2e-06 55.1 54 57.4
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.2e-06 54.7 53 54.7
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 4.2e-06 54.7 53 54.7
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 5.4e-06 54.3 71 52.1
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 7.1e-06 53.9 67 50.7
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 7.1e-06 53.9 66 51.5
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 9.3e-06 53.5 62 53.2


User provided reference genes

Program Settings