Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 1.4e-235 819.3 422 100.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.6e-218 761.9 422 91.9
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.3e-217 759.6 422 91.9
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 2.2e-217 758.8 422 91.7
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.7e-210 734.2 464 83.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 3.7e-201 704.9 422 85.1
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.7e-193 678.3 422 81.0
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 2.4e-192 675.6 422 80.1
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.0e-191 672.5 421 80.0
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.1e-188 662.5 422 78.2
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 6.8e-187 657.5 422 78.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 8.9e-187 657.1 418 78.0
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.7e-185 652.9 422 78.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 4.9e-185 651.4 422 77.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 2.4e-184 649.0 422 77.0
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.4e-184 647.9 422 77.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.2e-183 646.7 422 76.8
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.6e-183 646.4 422 77.0
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 6.0e-183 644.4 422 77.0
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.0e-183 644.4 422 76.8
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 6.0e-183 644.4 422 76.1
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.3e-182 642.5 422 75.8
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.3e-182 642.5 419 76.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-182 642.1 422 76.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.0e-182 641.3 422 76.3
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.1e-181 640.2 422 75.6
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 7.3e-181 637.5 422 75.8
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.2e-180 636.7 422 75.1
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.1e-180 636.0 422 75.6
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.8e-180 635.6 422 75.6
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 8.1e-180 634.0 421 74.6
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 1.8e-179 632.9 422 74.9
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 6.8e-179 630.9 423 75.2
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 6.8e-179 630.9 422 75.4
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 2.0e-178 629.4 422 74.6
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.0e-178 629.4 422 73.2
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 3.4e-178 628.6 422 74.6
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.8e-178 627.9 422 73.0
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-177 626.7 422 74.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.3e-177 626.7 422 74.9
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 2.9e-177 625.5 422 72.3
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.9e-176 622.9 419 72.8
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.4e-176 621.3 422 74.9
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 5.4e-176 621.3 424 75.2
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 7.1e-176 620.9 422 73.9
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.6e-175 619.8 424 74.8
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.6e-175 619.8 422 73.5
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.3e-174 616.7 422 71.3
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.3e-174 616.7 422 72.7
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.7e-174 616.3 422 73.2
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.5e-173 613.2 421 72.4
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.5e-173 613.2 422 73.5
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.5e-173 613.2 423 72.3
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 3.3e-173 612.1 423 72.3
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 7.3e-173 610.9 456 70.6
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.2e-172 610.1 426 73.2
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-172 610.1 429 71.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.8e-172 609.0 422 75.1
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 4.7e-172 608.2 431 72.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 6.8e-171 604.4 423 72.8
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.5e-170 603.2 422 70.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.0e-170 602.8 422 69.4
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.6e-170 602.4 426 71.4
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 4.4e-170 601.7 424 70.3
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 5.8e-170 601.3 422 73.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 4.9e-169 598.2 455 68.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 4.9e-169 598.2 424 70.5
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 2.4e-168 595.9 400 75.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.6e-167 591.7 424 70.5
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 3.0e-166 589.0 423 70.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.1e-165 587.0 422 70.4
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.4e-163 580.1 422 70.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.8e-163 579.7 424 69.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.4e-163 579.3 422 67.8
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 4.4e-162 575.1 420 69.8
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.8e-162 574.7 422 67.3
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.3e-161 573.5 419 67.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.9e-161 572.4 422 67.1
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 2.7e-159 565.8 423 70.0
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.3e-158 563.5 419 67.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.3e-156 557.0 422 67.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 3.6e-156 555.4 430 66.3
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 9.0e-155 550.8 422 67.1
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 9.0e-155 550.8 424 66.5
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 9.0e-155 550.8 423 66.7
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.2e-154 550.4 423 66.9
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.5e-154 550.1 423 66.2
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-154 549.7 423 66.0
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.6e-154 549.3 422 67.3
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.6e-154 549.3 422 66.6
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.2e-153 546.2 422 68.2
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 8.4e-153 544.3 423 66.0
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-152 543.9 423 66.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.1e-152 543.9 422 65.9
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.4e-152 543.5 422 65.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.9e-152 543.1 421 65.3
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.2e-151 540.4 423 66.7
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 3.5e-151 538.9 422 67.3
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.5e-149 533.5 420 62.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.9e-149 533.1 422 65.9
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.3e-148 530.4 421 64.1
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.3e-148 530.4 421 63.9
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.6e-148 530.0 380 71.3
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.1e-148 529.6 421 63.9
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.1e-148 529.6 421 63.9
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 6.2e-148 528.1 421 63.9
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.4e-147 526.2 423 63.6
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 4.0e-147 525.4 423 64.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 5.3e-147 525.0 422 63.5
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 1.5e-146 523.5 423 63.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.4e-146 522.3 324 78.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 4.5e-146 521.9 433 63.7
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.9e-145 519.2 423 63.6
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-144 517.3 313 82.1
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 9.3e-144 514.2 422 63.3
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-143 513.5 423 61.9
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.3e-142 509.6 381 67.7
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.1e-140 503.1 386 66.3
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.1e-139 499.2 423 62.2
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.6e-138 496.1 360 68.1
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.2e-136 488.8 444 59.0
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 5.9e-130 468.4 424 56.1
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 5.1e-126 455.3 424 54.5
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 4.8e-124 448.7 424 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 1.2e-122 444.1 448 52.2
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 6.1e-119 431.8 382 62.0
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.4e-115 419.9 394 58.6
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 1.4e-110 404.1 241 84.2
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 4.4e-109 399.1 427 50.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.9e-105 386.3 239 80.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.9e-105 386.3 281 68.0
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 9.7e-101 371.3 321 61.7
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.8e-100 369.8 355 56.3
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 7.0e-99 365.2 356 56.2
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.9e-98 362.1 424 51.9
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.6e-73 278.5 214 67.3
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 4.0e-70 269.6 430 38.1
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 9.5e-64 248.4 325 44.9
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 9.9e-61 238.4 341 39.6
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.0e-57 228.4 190 63.7
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.7e-55 219.5 194 58.8
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.4e-54 217.2 359 40.7
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.9e-48 197.6 194 53.1
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.6e-47 194.5 305 41.0
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 3.1e-46 190.3 142 64.1
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.2e-45 188.3 247 47.4
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 3.3e-40 170.2 324 33.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.6e-39 166.8 122 73.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 4.3e-32 143.3 169 48.5
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.6e-29 134.0 105 65.7
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.3e-23 115.2 78 69.2
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.3e-23 115.2 78 69.2
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.4e-22 111.7 76 68.4
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 9.0e-22 109.0 124 47.6
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 8.7e-17 92.4 421 22.3
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.8e-15 87.4 57 75.4
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.1e-14 85.5 48 87.5
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.4e-14 85.1 127 45.7
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 9.0e-14 82.4 115 48.7
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 1.7e-12 78.2 48 75.0
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 4.6e-10 70.1 202 27.7
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 28.2
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 28.2
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 28.2
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 28.2
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 28.2
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 28.2
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 7.9e-10 69.3 202 27.7
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.0e-09 68.9 202 27.7
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.0e-09 68.9 202 27.7
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.4e-09 68.6 202 27.7
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.4e-09 68.6 202 27.7
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 1.4e-09 68.6 202 27.7
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.8e-09 68.2 202 27.7
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.3e-09 67.8 202 27.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-09 67.4 49 65.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.0e-09 67.4 49 65.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 5.1e-09 66.6 202 27.2
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.1e-09 66.6 53 56.6
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 5.1e-09 66.6 202 26.7
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 1.1e-08 65.5 202 27.2
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 1.1e-08 65.5 202 27.2
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 1.1e-08 65.5 202 27.2
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 5.7e-08 63.2 59 52.5
Sabra02G0014100 Salix brachista HOM05D002716 ORTHO05D003324 1.3e-07 62.0 208 26.0
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 2.8e-07 60.8 134 27.6
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 3.7e-07 60.5 37 67.6
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.3e-07 59.7 39 69.2


User provided reference genes

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